Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47267 * 299.99832 * 3 2 1 6 6 H 1.48494 * 109.47391 * 60.00011 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21694 * 120.00409 * 359.97438 * 17 16 15 19 19 C 1.46666 * 119.99818 * 179.97438 * 17 16 15 20 20 C 1.36722 * 125.86025 * 179.97438 * 19 17 16 21 21 C 1.39916 * 106.91800 * 180.02562 * 20 19 17 22 22 C 1.36522 * 107.01797 * 0.02562 * 21 20 19 23 23 C 1.47742 * 125.76523 * 180.02562 * 22 21 20 24 24 C 1.40037 * 120.93060 * 359.71635 * 23 22 21 25 25 C 1.37948 * 118.98206 * 179.72598 * 24 23 22 26 26 N 1.31933 * 120.90812 * 0.56630 * 25 24 23 27 27 C 1.31929 * 122.07332 * 359.70577 * 26 25 24 28 28 C 1.37941 * 120.91175 * 0.02562 * 27 26 25 29 29 O 1.34390 * 108.46817 * 359.72981 * 22 21 20 30 30 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 40 40 H 1.07998 * 126.54545 * 359.97438 * 20 19 17 41 41 H 1.07998 * 126.49256 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.50826 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.54492 * 180.29378 * 25 24 23 44 44 H 1.08004 * 119.54526 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.50820 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8075 -4.3758 -3.9540 19 6 4.4432 -6.5281 -3.3373 20 6 5.1331 -6.8771 -4.4650 21 6 5.6022 -8.1805 -4.2683 22 6 5.1803 -8.5746 -3.0312 23 6 5.4476 -9.8857 -2.4048 24 6 6.1869 -10.8670 -3.0766 25 6 6.4175 -12.0750 -2.4516 26 7 5.9430 -12.3147 -1.2442 27 6 5.2374 -11.4206 -0.5785 28 6 4.9636 -10.1841 -1.1252 29 8 4.4863 -7.5661 -2.4768 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4234 -1.8591 1.0698 32 1 -0.6984 -2.3872 -0.6175 33 1 0.0113 -4.1089 1.8206 34 1 -1.2709 -4.3832 0.5936 35 1 0.3276 -4.9734 -1.1088 36 1 1.1305 -5.6530 0.3446 37 1 1.6416 -3.6213 -2.4174 38 1 3.1752 -2.9312 -1.8342 39 1 3.0992 -5.7173 -1.2622 40 1 5.2860 -6.2640 -5.3408 41 1 6.1872 -8.7643 -4.9635 42 1 6.5741 -10.6795 -4.0673 43 1 6.9906 -12.8366 -2.9595 44 1 4.8690 -11.6600 0.4082 45 1 4.3856 -9.4568 -0.5742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027931104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 40.851748 kcal Electronic energy + Delta-G solvation = -28256.972966 eV Core-core repulsion = 24241.832087 eV Total energy + Delta-G solvation = -4015.140880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -43.02072 -40.39781 -39.39716 -37.66592 -34.59597 -34.07669 -33.21125 -32.52654 -31.69651 -30.18909 -29.45032 -28.47805 -25.44248 -24.66779 -24.16321 -23.69146 -22.03197 -21.69165 -20.54671 -20.15289 -19.68050 -18.69638 -17.60890 -16.75517 -16.65959 -16.56524 -16.22811 -15.92326 -15.13815 -14.89508 -14.77230 -14.45793 -14.28451 -14.21623 -13.94463 -13.74943 -13.36074 -13.25154 -13.07548 -13.00877 -12.15595 -12.08120 -11.93295 -11.85633 -11.42128 -11.01962 -10.98516 -10.83909 -10.34022 -10.29410 -10.27134 -10.08883 -10.01310 -9.92299 -9.85499 -9.73749 -9.68187 -8.94225 -8.63925 -8.51817 -6.89501 -5.80460 -3.17483 0.02290 0.64459 1.21743 2.15991 2.16765 3.15433 3.20852 3.37815 3.38921 3.44322 3.46024 3.93000 3.98854 4.31308 4.45112 4.46282 4.50914 4.63910 4.74500 5.05716 5.14087 5.26625 5.28942 5.31590 5.34002 5.38502 5.44453 5.57081 5.61058 5.65902 5.75682 5.95955 6.00051 6.06203 6.13838 6.18485 6.40124 6.42763 6.45160 6.54001 6.62494 6.72297 6.97469 7.47987 7.48098 7.54745 7.58512 7.75996 8.15058 8.21943 9.13351 9.73717 10.40163 11.31186 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.002242 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.090959 B =12483.480104 C =13457.900291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.707 5.707 17 C 0.592 3.408 18 O -0.516 6.516 19 C -0.046 4.046 20 C -0.129 4.129 21 C -0.181 4.181 22 C 0.035 3.965 23 C 0.029 3.971 24 C -0.152 4.152 25 C 0.105 3.895 26 N -0.484 5.484 27 C 0.106 3.894 28 C -0.155 4.155 29 O -0.154 6.154 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 -23.697 -4.639 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.019 4.019 16 N -0.357 5.357 17 C 0.376 3.624 18 O -0.394 6.394 19 C -0.100 4.100 20 C -0.149 4.149 21 C -0.201 4.201 22 C -0.016 4.016 23 C 0.021 3.979 24 C -0.172 4.172 25 C -0.052 4.052 26 N -0.193 5.193 27 C -0.050 4.050 28 C -0.175 4.175 29 O -0.049 6.049 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.717 -23.577 -4.512 25.897 hybrid contribution 0.322 1.454 -0.392 1.540 sum 10.039 -22.123 -4.904 24.784 Atomic orbital electron populations 1.69943 1.05025 1.25261 1.55867 1.24911 0.95699 0.97916 1.01335 0.86062 0.78943 0.83589 0.77281 1.20342 1.21557 1.21681 1.19041 0.90459 0.82128 1.44670 0.90523 1.44506 1.05900 1.00730 1.80095 1.21483 0.84608 0.90331 0.98958 1.23025 0.97449 0.99540 0.98660 1.22655 0.97091 0.96998 0.99889 1.21138 0.94526 0.88190 0.91855 0.94312 1.22417 0.96868 0.82735 0.99831 1.46110 1.53178 1.19166 1.17266 1.16598 0.78983 0.83530 0.83283 1.90916 1.61091 1.42713 1.44652 1.22562 1.06810 0.89301 0.91295 1.21899 0.98155 0.95919 0.98945 1.21788 1.05029 0.96579 0.96711 1.20454 0.99236 0.88525 0.93428 1.18083 0.96783 0.89118 0.93923 1.22113 0.99570 0.93914 1.01617 1.22719 0.96314 0.95240 0.90909 1.67661 1.09104 1.34137 1.08413 1.22769 0.93687 0.88917 0.99662 1.22374 1.00825 0.99165 0.95127 1.84063 1.58221 1.20974 1.41662 0.93601 0.90713 0.95610 0.92261 0.92256 0.91781 0.92335 0.91435 0.90561 0.76517 0.81631 0.82192 0.84002 0.82026 0.82034 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 10.54 55.49 0.58 -25.74 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.34 9.73 -15.06 -0.15 -6.49 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.32 3.13 -162.57 -0.51 -14.83 16 10 C 0.17 4.00 5.42 -2.53 -0.01 3.98 16 11 C -0.15 -2.64 7.10 -24.52 -0.17 -2.82 16 12 C -0.13 -2.07 6.07 -24.83 -0.15 -2.22 16 13 C 0.15 2.92 3.22 -66.95 -0.22 2.70 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C 0.11 1.99 5.09 -4.04 -0.02 1.97 16 16 N -0.71 -10.73 5.40 -61.62 -0.33 -11.06 16 17 C 0.59 9.45 7.79 -12.86 -0.10 9.35 16 18 O -0.52 -10.05 16.86 5.19 0.09 -9.96 16 19 C -0.05 -0.61 7.12 -36.73 -0.26 -0.87 16 20 C -0.13 -1.45 10.59 -39.50 -0.42 -1.86 16 21 C -0.18 -1.63 10.26 -39.57 -0.41 -2.04 16 22 C 0.04 0.35 7.05 -36.32 -0.26 0.10 16 23 C 0.03 0.25 5.91 -104.67 -0.62 -0.37 16 24 C -0.15 -0.99 9.64 -39.01 -0.38 -1.37 16 25 C 0.10 0.70 11.17 -17.61 -0.20 0.50 16 26 N -0.48 -4.16 10.34 -13.36 -0.14 -4.30 16 27 C 0.11 0.80 11.17 -17.62 -0.20 0.60 16 28 C -0.16 -1.23 9.82 -39.02 -0.38 -1.61 16 29 O -0.15 -1.79 10.23 3.82 0.04 -1.75 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.07 1.95 6.86 -51.93 -0.36 1.60 16 32 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.08 1.63 7.86 -51.93 -0.41 1.23 16 39 H 0.40 5.04 7.99 -40.82 -0.33 4.71 16 40 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.16 0.91 7.33 -52.49 -0.38 0.53 16 42 H 0.14 0.57 7.11 -52.49 -0.37 0.19 16 43 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.14 1.00 7.99 -52.48 -0.42 0.58 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -32.70 381.93 -9.58 -42.28 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.01 Total: 3.27 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.03 Total: -0.59 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.39 Total: -55.93 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.13 Total: -11.71 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.70 -9.58 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027931104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.131 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds