Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47323 * 270.00419 * 3 2 1 5 5 H 1.48504 * 109.46991 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.47269 * 149.99683 * 3 2 1 7 7 C 1.38810 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65102 * 14.73815 * 9 7 2 11 11 C 1.54905 * 104.83385 * 155.88712 * 10 9 7 12 12 C 1.55158 * 101.58009 * 37.01394 * 11 10 9 13 13 C 1.47025 * 125.64674 * 194.75712 * 9 7 2 14 14 H 1.08998 * 110.01287 * 300.52690 * 13 9 7 15 15 C 1.52997 * 109.88389 * 61.62665 * 13 9 7 16 16 N 1.46492 * 109.47352 * 182.39563 * 15 13 9 17 17 C 1.34772 * 120.00217 * 185.12897 * 16 15 13 18 18 O 1.21693 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.46673 * 120.00289 * 179.97438 * 17 16 15 20 20 C 1.36719 * 125.86160 * 180.02562 * 19 17 16 21 21 C 1.39914 * 106.91552 * 179.97438 * 20 19 17 22 22 C 1.36508 * 107.01967 * 0.23912 * 21 20 19 23 23 C 1.47745 * 125.76678 * 179.75647 * 22 21 20 24 24 C 1.40030 * 120.93176 * 359.72538 * 23 22 21 25 25 C 1.37943 * 118.98988 * 179.75003 * 24 23 22 26 26 N 1.31936 * 120.90438 * 0.52996 * 25 24 23 27 27 C 1.31927 * 122.07287 * 359.71823 * 26 25 24 28 28 C 1.37942 * 120.91539 * 0.02562 * 27 26 25 29 29 O 1.34392 * 108.47077 * 359.60787 * 22 21 20 30 30 H 0.97000 * 120.00018 * 359.97438 * 1 2 3 31 31 H 1.09006 * 110.36241 * 37.04611 * 10 9 7 32 32 H 1.09002 * 110.45491 * 274.77937 * 10 9 7 33 33 H 1.08994 * 111.00439 * 278.93545 * 11 10 9 34 34 H 1.09004 * 111.00070 * 155.08345 * 11 10 9 35 35 H 1.09006 * 110.71624 * 206.13561 * 12 11 10 36 36 H 1.08994 * 110.72299 * 82.85951 * 12 11 10 37 37 H 1.08998 * 109.46984 * 62.39447 * 15 13 9 38 38 H 1.09003 * 109.46536 * 302.39753 * 15 13 9 39 39 H 0.97009 * 120.00078 * 5.13591 * 16 15 13 40 40 H 1.07996 * 126.54195 * 359.95740 * 20 19 17 41 41 H 1.08003 * 126.48785 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.50897 * 359.97322 * 24 23 22 43 43 H 1.07992 * 119.54943 * 180.25261 * 25 24 23 44 44 H 1.08006 * 119.54202 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.51458 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1075 -2.5528 -0.3048 11 6 -0.2464 -4.0219 -0.7760 12 6 0.7642 -4.7442 0.1537 13 6 1.8979 -3.7078 0.3033 14 1 2.7027 -3.9353 -0.3958 15 6 2.4332 -3.7255 1.7364 16 7 3.0521 -5.0246 2.0106 17 6 3.5028 -5.3085 3.2486 18 8 3.3953 -4.4858 4.1388 19 6 4.1220 -6.6095 3.5233 20 6 4.6175 -7.0221 4.7288 21 6 5.1110 -8.3182 4.5440 22 6 4.9024 -8.6422 3.2345 23 6 5.2734 -9.9196 2.5913 24 6 5.9027 -10.9363 3.3200 25 6 6.2266 -12.1149 2.6805 26 7 5.9608 -12.2861 1.3996 27 6 5.3740 -11.3527 0.6751 28 6 5.0107 -10.1452 1.2344 29 8 4.2997 -7.6043 2.6298 30 1 -0.4850 0.8400 0.0004 31 1 -0.4076 -1.8695 -1.0993 32 1 -0.7086 -2.3823 0.5884 33 1 0.0418 -4.1256 -1.8220 34 1 -1.2593 -4.3903 -0.6131 35 1 1.1348 -5.6563 -0.3142 36 1 0.3109 -4.9622 1.1207 37 1 1.6115 -3.5602 2.4332 38 1 3.1758 -2.9366 1.8566 39 1 3.1376 -5.6806 1.3011 40 1 4.6265 -6.4556 5.6483 41 1 5.5737 -8.9423 5.2943 42 1 6.1277 -10.8013 4.3677 43 1 6.7084 -12.9066 3.2349 44 1 5.1760 -11.5363 -0.3707 45 1 4.5302 -9.3859 0.6354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027931105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 40.766395 kcal Electronic energy + Delta-G solvation = -28266.623645 eV Core-core repulsion = 24251.479064 eV Total energy + Delta-G solvation = -4015.144581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.02114 -40.39738 -39.39820 -37.66286 -34.59449 -34.07601 -33.21058 -32.52539 -31.69620 -30.18779 -29.45069 -28.47453 -25.44110 -24.66560 -24.16209 -23.68920 -22.02862 -21.69074 -20.53044 -20.16453 -19.69269 -18.68545 -17.60826 -16.73800 -16.65116 -16.56434 -16.22722 -15.91727 -15.12330 -14.90552 -14.79400 -14.44987 -14.28639 -14.21486 -13.95958 -13.73771 -13.35663 -13.24886 -13.10694 -13.01759 -12.14204 -12.08056 -11.93515 -11.82101 -11.38475 -11.01913 -10.98879 -10.81503 -10.35381 -10.30020 -10.27913 -10.11571 -10.01440 -9.94099 -9.85987 -9.74306 -9.68145 -8.91788 -8.63154 -8.51614 -6.89023 -5.80772 -3.17940 0.02379 0.64519 1.21824 2.16099 2.16847 3.15625 3.20908 3.37857 3.38975 3.43739 3.45270 3.93079 3.98918 4.31372 4.45080 4.46310 4.50961 4.63984 4.74555 5.05776 5.14154 5.26884 5.29014 5.31634 5.34856 5.38571 5.45179 5.57044 5.61114 5.66078 5.76025 5.98009 6.00142 6.06107 6.13900 6.19411 6.40268 6.42842 6.45385 6.54342 6.63045 6.72725 6.97910 7.47228 7.48048 7.55136 7.58738 7.75413 8.15114 8.21990 9.13128 9.73534 10.40545 11.31115 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.002229 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.944259 B =12557.673526 C =13403.305148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.707 5.707 17 C 0.592 3.408 18 O -0.516 6.516 19 C -0.046 4.046 20 C -0.129 4.129 21 C -0.181 4.181 22 C 0.035 3.965 23 C 0.029 3.971 24 C -0.152 4.152 25 C 0.105 3.895 26 N -0.484 5.484 27 C 0.106 3.894 28 C -0.155 4.155 29 O -0.154 6.154 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -23.695 5.007 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.357 5.357 17 C 0.376 3.624 18 O -0.394 6.394 19 C -0.100 4.100 20 C -0.149 4.149 21 C -0.201 4.201 22 C -0.016 4.016 23 C 0.021 3.979 24 C -0.172 4.172 25 C -0.052 4.052 26 N -0.193 5.193 27 C -0.050 4.050 28 C -0.175 4.175 29 O -0.049 6.049 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.455 -23.564 4.883 25.856 hybrid contribution 0.292 1.444 0.390 1.524 sum 9.747 -22.120 5.273 24.741 Atomic orbital electron populations 1.69935 1.05037 1.25403 1.55641 1.24929 0.95693 0.97924 1.01240 0.86140 0.78822 0.83333 0.77596 1.21489 1.21555 1.20490 1.18983 0.90409 0.82134 1.44930 0.90606 1.44488 1.06445 1.00964 1.79275 1.21464 0.84728 0.90181 0.98911 1.23006 0.97566 0.99580 0.98548 1.22618 0.97128 0.96970 0.99796 1.21136 0.94627 0.88260 0.91667 0.94368 1.22415 0.97733 0.81953 0.99744 1.46107 1.59684 1.19630 1.10267 1.16596 0.78773 0.83226 0.83803 1.90915 1.57046 1.46294 1.45148 1.22563 1.07940 0.90196 0.89256 1.21897 0.99234 0.95397 0.98404 1.21785 1.05570 0.97221 0.95529 1.20450 1.01313 0.88241 0.91643 1.18084 0.96872 0.89464 0.93485 1.22110 0.99802 0.93710 1.01596 1.22717 0.96029 0.95826 0.90609 1.67662 1.11593 1.32653 1.07409 1.22770 0.93320 0.88657 1.00290 1.22375 1.00974 0.99606 0.94533 1.84063 1.60718 1.21592 1.38542 0.93538 0.90924 0.95513 0.92256 0.92289 0.92367 0.91799 0.91045 0.90973 0.76517 0.81636 0.82194 0.84005 0.82027 0.82035 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.31 10.58 55.49 0.59 -25.73 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.37 9.76 -15.06 -0.15 -6.52 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.31 3.13 -162.57 -0.51 -14.82 16 10 C 0.17 4.03 5.41 -2.53 -0.01 4.01 16 11 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 12 C -0.13 -2.07 6.10 -24.89 -0.15 -2.23 16 13 C 0.15 2.92 3.22 -66.95 -0.22 2.71 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.00 5.07 -4.05 -0.02 1.98 16 16 N -0.71 -10.71 5.32 -61.63 -0.33 -11.04 16 17 C 0.59 9.44 7.79 -12.86 -0.10 9.34 16 18 O -0.52 -10.05 16.85 5.19 0.09 -9.96 16 19 C -0.05 -0.60 7.12 -36.73 -0.26 -0.87 16 20 C -0.13 -1.45 10.59 -39.50 -0.42 -1.86 16 21 C -0.18 -1.63 10.26 -39.58 -0.41 -2.04 16 22 C 0.04 0.35 7.05 -36.32 -0.26 0.09 16 23 C 0.03 0.25 5.91 -104.67 -0.62 -0.37 16 24 C -0.15 -0.99 9.64 -39.02 -0.38 -1.37 16 25 C 0.10 0.70 11.17 -17.61 -0.20 0.50 16 26 N -0.48 -4.16 10.34 -13.36 -0.14 -4.30 16 27 C 0.11 0.80 11.17 -17.62 -0.20 0.60 16 28 C -0.16 -1.23 9.82 -39.02 -0.38 -1.61 16 29 O -0.15 -1.78 10.23 3.83 0.04 -1.74 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 32 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 37 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 38 H 0.07 1.52 7.92 -51.93 -0.41 1.11 16 39 H 0.40 5.03 8.08 -40.82 -0.33 4.70 16 40 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.16 0.91 7.33 -52.48 -0.38 0.53 16 42 H 0.14 0.57 7.12 -52.48 -0.37 0.19 16 43 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.14 1.00 7.99 -52.49 -0.42 0.58 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -32.65 382.17 -9.58 -42.23 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.03 Total: 3.32 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -4.03 Total: -0.58 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.39 Total: -55.89 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.13 Total: -11.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.65 -9.58 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027931105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.999 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds