Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99577 * 2 1 4 4 H 1.48500 * 109.46648 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47325 * 300.00178 * 3 2 1 6 6 H 1.48503 * 109.46872 * 60.00422 * 3 2 1 7 7 C 1.38811 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99611 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.65014 * 346.48560 * 9 7 2 11 11 C 1.54916 * 104.83027 * 204.09010 * 10 9 7 12 12 C 1.55162 * 101.58135 * 322.99132 * 11 10 9 13 13 C 1.47022 * 125.64500 * 166.44328 * 9 7 2 14 14 H 1.08994 * 109.88381 * 59.56268 * 13 9 7 15 15 C 1.52999 * 109.88301 * 298.39453 * 13 9 7 16 16 N 1.46496 * 109.47316 * 177.54229 * 15 13 9 17 17 C 1.34775 * 120.00246 * 184.63030 * 16 15 13 18 18 O 1.21514 * 120.00309 * 0.02562 * 17 16 15 19 19 C 1.48156 * 119.99941 * 180.02562 * 17 16 15 20 20 C 1.40027 * 120.86371 * 359.71682 * 19 17 16 21 21 C 1.38152 * 119.26193 * 179.77334 * 20 19 17 22 22 N 1.31715 * 121.06604 * 0.51745 * 21 20 19 23 23 C 1.32818 * 121.90063 * 359.73703 * 22 21 20 24 24 C 1.47661 * 119.69447 * 180.02562 * 23 22 21 25 25 C 1.36026 * 125.93858 * 359.69186 * 24 23 22 26 26 C 1.40831 * 106.73660 * 179.90744 * 25 24 23 27 27 C 1.34808 * 107.03855 * 0.35554 * 26 25 24 28 28 O 1.34223 * 108.68796 * 359.77918 * 27 26 25 29 29 C 1.39474 * 120.85955 * 180.02562 * 19 17 16 30 30 H 0.96991 * 120.00301 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.36300 * 85.25431 * 10 9 7 32 32 H 1.08997 * 110.45946 * 322.97557 * 10 9 7 33 33 H 1.09003 * 111.00058 * 204.91458 * 11 10 9 34 34 H 1.08996 * 111.00056 * 81.06682 * 11 10 9 35 35 H 1.09004 * 110.71341 * 153.86560 * 12 11 10 36 36 H 1.08993 * 110.72131 * 277.13759 * 12 11 10 37 37 H 1.09007 * 109.47040 * 297.54260 * 15 13 9 38 38 H 1.08995 * 109.47148 * 57.54307 * 15 13 9 39 39 H 0.97006 * 119.99657 * 4.63277 * 16 15 13 40 40 H 1.07997 * 120.37024 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.46168 * 180.25664 * 21 20 19 42 42 H 1.07999 * 126.63133 * 0.02562 * 25 24 23 43 43 H 1.07997 * 126.47777 * 180.13363 * 26 25 24 44 44 H 1.08006 * 125.65187 * 179.75788 * 27 26 25 45 45 H 1.08002 * 120.55964 * 359.95244 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1126 -2.5498 0.2799 11 6 -0.2601 -4.0143 0.7631 12 6 0.7668 -4.7456 -0.1414 13 6 1.9030 -3.7107 -0.2811 14 1 2.6941 -3.9296 0.4361 15 6 2.4636 -3.7425 -1.7044 16 7 3.0884 -5.0438 -1.9542 17 6 3.7347 -5.2692 -3.1152 18 8 3.7997 -4.3930 -3.9546 19 6 4.3661 -6.5855 -3.3680 20 6 4.3074 -7.6060 -2.4111 21 6 4.9035 -8.8222 -2.6834 22 7 5.5325 -9.0311 -3.8216 23 6 5.6196 -8.0931 -4.7578 24 6 6.3362 -8.3802 -6.0166 25 6 6.9503 -9.5511 -6.3364 26 6 7.4986 -9.3833 -7.6227 27 6 7.2024 -8.1289 -8.0178 28 8 6.5004 -7.5262 -7.0454 29 6 5.0398 -6.8381 -4.5628 30 1 -0.4850 0.8399 -0.0004 31 1 -0.6963 -2.3888 -0.6265 32 1 -0.4284 -1.8589 1.0615 33 1 -1.2700 -4.3842 0.5860 34 1 0.0096 -4.1076 1.8150 35 1 1.1289 -5.6530 0.3420 36 1 0.3307 -4.9732 -1.1140 37 1 1.6542 -3.5852 -2.4173 38 1 3.2075 -2.9542 -1.8195 39 1 3.0369 -5.7432 -1.2840 40 1 3.7982 -7.4456 -1.4723 41 1 4.8566 -9.6130 -1.9492 42 1 7.0051 -10.4385 -5.7233 43 1 8.0546 -10.1191 -8.1847 44 1 7.4837 -7.6828 -8.9604 45 1 5.1112 -6.0759 -5.3247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027957203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 45.293401 kcal Electronic energy + Delta-G solvation = -28181.822096 eV Core-core repulsion = 24166.873821 eV Total energy + Delta-G solvation = -4014.948275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.86317 -40.70839 -39.13915 -37.66464 -34.53785 -33.62378 -32.90207 -32.49429 -32.46912 -29.75629 -29.01680 -28.68034 -25.58989 -24.69268 -24.15958 -23.42420 -21.86992 -21.55494 -20.51291 -20.09501 -19.64998 -18.61950 -17.42702 -16.75085 -16.72408 -16.41443 -16.02431 -15.60955 -15.55363 -15.16049 -14.82460 -14.44975 -14.23388 -14.12475 -13.85862 -13.56817 -13.19823 -13.11515 -13.05478 -12.78551 -12.20779 -12.13656 -11.93627 -11.87522 -11.41552 -10.98690 -10.84247 -10.46259 -10.37340 -10.29239 -10.19264 -10.11597 -9.97601 -9.96981 -9.90346 -9.78438 -9.68614 -8.84438 -8.63034 -8.41302 -6.90187 -5.80806 -3.17837 0.15765 0.57933 1.59057 2.29897 2.36851 2.92079 3.11426 3.37495 3.44180 3.45843 3.63322 3.96844 4.25952 4.38152 4.47897 4.57686 4.63474 4.70070 4.74419 4.93373 5.26716 5.31491 5.34167 5.36237 5.43576 5.49426 5.56432 5.59207 5.66764 5.73922 5.78239 5.95587 6.06157 6.12444 6.16104 6.19344 6.39310 6.45744 6.49734 6.61024 6.71768 6.72480 6.96565 7.45194 7.47374 7.54693 7.58680 7.75511 8.19679 8.24453 9.12919 9.73302 10.39470 11.30784 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.002181 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.581433 B =12834.338083 C =14021.430597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.129 4.129 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.711 5.711 17 C 0.548 3.452 18 O -0.527 6.527 19 C -0.074 4.074 20 C -0.141 4.141 21 C 0.108 3.892 22 N -0.458 5.458 23 C 0.196 3.804 24 C 0.016 3.984 25 C -0.151 4.151 26 C -0.221 4.221 27 C -0.021 4.021 28 O -0.166 6.166 29 C -0.098 4.098 30 H 0.254 0.746 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.396 0.604 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.208 0.792 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -21.727 -8.102 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.167 4.167 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.362 5.362 17 C 0.333 3.667 18 O -0.403 6.403 19 C -0.085 4.085 20 C -0.161 4.161 21 C -0.049 4.049 22 N -0.169 5.169 23 C 0.060 3.940 24 C -0.034 4.034 25 C -0.171 4.171 26 C -0.240 4.240 27 C -0.090 4.090 28 O -0.061 6.061 29 C -0.119 4.119 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.225 0.775 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.355 -21.276 -8.810 25.249 hybrid contribution 0.123 1.198 0.277 1.236 sum 10.478 -20.078 -8.532 24.201 Atomic orbital electron populations 1.69943 1.05015 1.25263 1.55906 1.24911 0.95704 0.97919 1.01351 0.86062 0.78943 0.83592 0.77282 1.20344 1.21561 1.21675 1.19038 0.90456 0.82140 1.44638 0.90527 1.44501 1.05782 1.00729 1.80215 1.21489 0.84598 0.90332 0.98963 1.23007 0.97454 0.99560 0.98670 1.22639 0.97162 0.96991 0.99886 1.21140 0.94452 0.88200 0.91920 0.94343 1.22368 0.97493 0.82267 0.99609 1.46067 1.54870 1.17518 1.17778 1.18123 0.79241 0.86535 0.82810 1.90812 1.59415 1.45137 1.44965 1.20482 0.98233 0.94943 0.94839 1.22484 0.99832 0.93888 0.99930 1.22661 0.92891 0.96150 0.93246 1.67301 1.15533 1.32754 1.01311 1.18150 0.95635 0.89826 0.90361 1.19654 1.05220 0.89809 0.88733 1.21896 0.99980 0.98535 0.96730 1.21863 1.06797 0.98003 0.97369 1.24271 0.97624 0.93601 0.93486 1.84062 1.58368 1.40317 1.23375 1.22283 0.94857 0.97253 0.97517 0.93603 0.95664 0.90665 0.92279 0.92233 0.92346 0.91748 0.91555 0.90805 0.76949 0.83720 0.81250 0.82462 0.82909 0.77495 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.53 55.49 0.58 -25.73 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.32 9.76 -15.06 -0.15 -6.47 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.21 3.13 -162.57 -0.51 -14.71 16 10 C 0.17 3.96 5.43 -2.52 -0.01 3.95 16 11 C -0.15 -2.59 7.09 -24.58 -0.17 -2.77 16 12 C -0.13 -2.00 5.97 -24.89 -0.15 -2.15 16 13 C 0.15 2.85 3.25 -66.95 -0.22 2.64 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 1.99 5.07 -4.04 -0.02 1.97 16 16 N -0.71 -10.16 5.34 -61.15 -0.33 -10.49 16 17 C 0.55 8.54 7.80 -12.19 -0.10 8.45 16 18 O -0.53 -10.46 16.44 5.35 0.09 -10.37 16 19 C -0.07 -0.92 5.90 -104.69 -0.62 -1.54 16 20 C -0.14 -1.26 9.61 -38.94 -0.37 -1.63 16 21 C 0.11 0.92 11.16 -17.63 -0.20 0.72 16 22 N -0.46 -4.99 10.02 -9.91 -0.10 -5.09 16 23 C 0.20 2.36 6.74 -83.08 -0.56 1.80 16 24 C 0.02 0.19 7.03 -36.53 -0.26 -0.07 16 25 C -0.15 -1.49 10.58 -39.40 -0.42 -1.90 16 26 C -0.22 -1.74 10.89 -39.82 -0.43 -2.18 16 27 C -0.02 -0.16 12.08 29.52 0.36 0.19 16 28 O -0.17 -1.85 10.39 4.78 0.05 -1.80 16 29 C -0.10 -1.26 9.32 -38.61 -0.36 -1.62 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.08 1.95 6.85 -51.93 -0.36 1.60 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.99 7.81 -51.93 -0.41 0.58 16 37 H 0.07 1.37 8.08 -51.92 -0.42 0.95 16 38 H 0.07 1.58 7.91 -51.93 -0.41 1.17 16 39 H 0.40 4.25 6.30 -40.82 -0.26 3.99 16 40 H 0.15 0.87 6.52 -52.49 -0.34 0.53 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.21 0.78 8.06 -52.48 -0.42 0.35 16 45 H 0.15 2.06 7.58 -52.49 -0.40 1.66 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -33.66 379.96 -9.22 -42.88 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.94 Total: 3.39 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -3.77 Total: -0.75 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.35 Total: -56.02 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.14 Total: -12.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.66 -9.22 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027957203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.173 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds