Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99578 * 2 1 4 4 H 1.48501 * 109.46908 * 269.55008 * 3 2 1 5 5 H 1.48494 * 109.47199 * 29.55725 * 3 2 1 6 6 H 1.48506 * 109.46741 * 149.55557 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00021 * 347.23517 * 7 2 1 9 9 N 1.36938 * 119.99614 * 167.23593 * 7 2 1 10 10 C 1.47427 * 125.64950 * 319.45974 * 9 7 2 11 11 C 1.54907 * 104.92701 * 155.84114 * 10 9 7 12 12 C 1.55446 * 101.45323 * 37.01071 * 11 10 9 13 13 C 1.47018 * 125.65009 * 139.49277 * 9 7 2 14 14 H 1.09004 * 109.88441 * 300.45310 * 13 9 7 15 15 C 1.53002 * 109.88159 * 61.61272 * 13 9 7 16 16 N 1.46498 * 109.47374 * 295.92824 * 15 13 9 17 17 C 1.34778 * 120.00094 * 173.00618 * 16 15 13 18 18 O 1.21523 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.48145 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.40028 * 120.86165 * 359.72307 * 19 17 16 21 21 C 1.38151 * 119.26595 * 179.77146 * 20 19 17 22 22 N 1.31712 * 121.06262 * 0.51434 * 21 20 19 23 23 C 1.32815 * 121.90132 * 359.73485 * 22 21 20 24 24 C 1.47665 * 119.69621 * 179.97438 * 23 22 21 25 25 C 1.36026 * 125.93954 * 359.73690 * 24 23 22 26 26 C 1.40832 * 106.74064 * 179.88595 * 25 24 23 27 27 C 1.34809 * 107.03807 * 0.38146 * 26 25 24 28 28 O 1.34222 * 108.68728 * 359.76041 * 27 26 25 29 29 C 1.39470 * 120.86363 * 179.97438 * 19 17 16 30 30 H 0.97001 * 120.00665 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.36848 * 274.73657 * 10 9 7 32 32 H 1.09007 * 110.36379 * 36.95110 * 10 9 7 33 33 H 1.09004 * 111.00242 * 155.14267 * 11 10 9 34 34 H 1.08998 * 111.00915 * 278.99282 * 11 10 9 35 35 H 1.09000 * 110.70471 * 206.14650 * 12 11 10 36 36 H 1.08995 * 110.71087 * 82.88437 * 12 11 10 37 37 H 1.09005 * 109.47148 * 55.92955 * 15 13 9 38 38 H 1.09002 * 109.47252 * 175.92357 * 15 13 9 39 39 H 0.96997 * 119.99839 * 353.01045 * 16 15 13 40 40 H 1.08001 * 120.36953 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.46955 * 180.25015 * 21 20 19 42 42 H 1.08006 * 126.63302 * 0.02923 * 25 24 23 43 43 H 1.07997 * 126.48256 * 180.14158 * 26 25 24 44 44 H 1.07998 * 125.65646 * 179.75203 * 27 26 25 45 45 H 1.08000 * 120.56233 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5070 2.0410 -1.4001 5 1 1.4428 2.6554 0.6906 6 1 3.5429 1.4430 0.7095 7 6 2.0102 -1.2021 0.0005 8 1 1.4903 -2.1257 0.2076 9 7 3.3542 -1.2168 -0.2615 10 6 4.0387 -0.4076 -1.2862 11 6 5.5035 -0.2969 -0.7945 12 6 5.7300 -1.7064 -0.1794 13 6 4.3535 -2.0426 0.4321 14 1 4.3536 -1.8084 1.4967 15 6 4.0391 -3.5252 0.2226 16 7 2.7520 -3.8443 0.8454 17 6 2.2008 -5.0613 0.6679 18 8 2.7717 -5.8941 -0.0083 19 6 0.8995 -5.3842 1.2981 20 6 0.2294 -4.4406 2.0864 21 6 -0.9847 -4.7751 2.6545 22 7 -1.5138 -5.9677 2.4741 23 6 -0.9143 -6.8977 1.7395 24 6 -1.5512 -8.2192 1.5701 25 6 -2.7363 -8.6096 2.1118 26 6 -2.9577 -9.9351 1.6907 27 6 -1.9040 -10.2884 0.9276 28 8 -1.0568 -9.2497 0.8569 29 6 0.3126 -6.6376 1.1260 30 1 -0.4851 0.8400 -0.0004 31 1 4.0001 -0.9086 -2.2534 32 1 3.5854 0.5814 -1.3537 33 1 6.1830 -0.1183 -1.6279 34 1 5.6037 0.4807 -0.0372 35 1 6.4972 -1.6707 0.5940 36 1 5.9943 -2.4268 -0.9535 37 1 3.9890 -3.7387 -0.8451 38 1 4.8230 -4.1307 0.6777 39 1 2.2965 -3.1796 1.3854 40 1 0.6549 -3.4607 2.2451 41 1 -1.5063 -4.0485 3.2597 42 1 -3.3836 -8.0168 2.7411 43 1 -3.8086 -10.5532 1.9362 44 1 -1.7646 -11.2480 0.4521 45 1 0.7994 -7.3946 0.5291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027957204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 50.837201 kcal Electronic energy + Delta-G solvation = -28996.261073 eV Core-core repulsion = 24981.553195 eV Total energy + Delta-G solvation = -4014.707878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.64974 -40.36957 -38.95179 -37.84225 -34.25548 -33.37055 -32.77409 -32.54824 -32.14330 -30.06239 -29.49608 -28.62225 -25.59304 -24.54132 -23.84505 -23.23701 -21.67202 -21.32322 -20.83449 -19.99319 -19.64207 -18.41724 -17.31460 -16.66182 -16.42201 -16.20357 -16.16043 -15.66432 -15.21025 -15.03206 -14.94243 -14.53586 -14.03561 -13.88084 -13.59782 -13.38269 -13.08682 -13.01039 -12.89753 -12.61609 -12.55403 -12.39012 -12.08875 -11.75678 -11.41286 -11.34627 -11.00148 -10.80297 -10.58083 -10.26744 -10.18195 -10.03068 -9.91304 -9.87109 -9.66539 -9.65822 -9.43138 -8.71637 -8.50894 -8.13955 -6.87505 -6.12192 -3.65135 0.51660 0.92438 1.85031 2.53115 2.59961 3.20430 3.22678 3.36139 3.40975 3.46575 3.99033 4.25463 4.39366 4.63498 4.76157 4.86129 4.88541 4.90484 5.02711 5.04371 5.07623 5.26459 5.30057 5.35724 5.45793 5.66995 5.71771 5.73885 5.77418 5.86515 5.88857 5.92121 6.01152 6.04871 6.13380 6.19615 6.25658 6.32701 6.35465 6.52475 6.56100 6.76031 6.79162 6.88597 6.94233 7.80844 7.81936 7.92454 8.19465 8.52310 8.67070 9.50630 10.12372 11.00686 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.002790 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.411247 B =10032.672671 C =11251.070617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.039 3.961 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.114 3.886 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.049 0.951 15 C 0.115 3.885 16 N -0.695 5.695 17 C 0.553 3.447 18 O -0.547 6.547 19 C -0.077 4.077 20 C -0.123 4.123 21 C 0.110 3.890 22 N -0.457 5.457 23 C 0.185 3.815 24 C 0.025 3.975 25 C -0.157 4.157 26 C -0.220 4.220 27 C -0.028 4.028 28 O -0.167 6.167 29 C -0.098 4.098 30 H 0.266 0.734 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.413 0.587 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.207 0.793 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -12.425 5.130 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.163 4.163 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.328 5.328 10 C -0.010 4.010 11 C -0.175 4.175 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.067 0.933 15 C -0.010 4.010 16 N -0.347 5.347 17 C 0.338 3.662 18 O -0.426 6.426 19 C -0.088 4.088 20 C -0.144 4.144 21 C -0.048 4.048 22 N -0.168 5.168 23 C 0.049 3.951 24 C -0.025 4.025 25 C -0.177 4.177 26 C -0.239 4.239 27 C -0.097 4.097 28 O -0.063 6.063 29 C -0.119 4.119 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.175 0.825 43 H 0.169 0.831 44 H 0.223 0.777 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.822 -13.043 4.903 13.958 hybrid contribution 0.638 1.526 -0.290 1.679 sum 1.459 -11.517 4.613 12.492 Atomic orbital electron populations 1.69763 1.05789 1.27066 1.51461 1.25546 0.95188 0.98223 0.97318 0.86648 0.79775 0.83596 0.77265 1.21392 1.23205 1.19289 1.18604 0.80396 0.93560 1.46473 0.89553 1.44648 1.03409 1.48447 1.36281 1.21944 0.90707 0.95639 0.92760 1.22829 0.97622 0.96879 1.00125 1.22532 0.96188 0.97207 1.00017 1.21305 0.89292 0.89469 0.96425 0.93294 1.22004 0.83462 0.97271 0.98293 1.46092 1.23121 1.13846 1.51689 1.18071 0.84350 0.82766 0.80982 1.90729 1.63255 1.48334 1.40318 1.20382 0.95916 0.94482 0.97978 1.22639 0.96096 1.00234 0.95419 1.22674 0.92611 0.92213 0.97273 1.67285 1.33938 1.01501 1.14077 1.18107 0.91139 0.89860 0.95949 1.19710 0.95240 0.87709 0.99846 1.21884 0.96906 0.95825 1.03097 1.21840 1.01334 0.97057 1.03645 1.24197 0.90378 0.91966 1.03136 1.84049 1.44578 1.20171 1.57454 1.22184 0.94561 0.96996 0.98190 0.92421 0.95136 0.93933 0.91515 0.91581 0.91361 0.91234 0.91360 0.92574 0.74681 0.83086 0.81149 0.82487 0.83059 0.77684 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 13.97 55.49 0.78 -24.62 16 2 C 0.04 1.04 5.48 -17.43 -0.10 0.95 16 3 Si 0.90 21.23 24.88 -169.99 -4.23 17.00 16 4 H -0.29 -6.77 6.70 56.52 0.38 -6.39 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.13 7.07 56.52 0.40 -5.73 16 7 C -0.26 -6.57 9.39 -15.06 -0.14 -6.71 16 8 H 0.09 2.22 5.72 -52.49 -0.30 1.92 16 9 N -0.60 -13.03 2.62 -162.57 -0.43 -13.46 16 10 C 0.11 2.30 6.22 -2.53 -0.02 2.28 16 11 C -0.14 -2.17 7.11 -24.43 -0.17 -2.34 16 12 C -0.12 -1.76 6.49 -24.74 -0.16 -1.92 16 13 C 0.14 2.50 3.31 -66.95 -0.22 2.28 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.12 2.00 5.16 -4.04 -0.02 1.98 16 16 N -0.69 -12.46 4.25 -61.15 -0.26 -12.72 16 17 C 0.55 10.31 7.80 -12.19 -0.10 10.21 16 18 O -0.55 -11.52 16.41 5.35 0.09 -11.43 16 19 C -0.08 -1.28 5.90 -104.70 -0.62 -1.90 16 20 C -0.12 -1.85 9.61 -38.94 -0.37 -2.23 16 21 C 0.11 1.53 11.16 -17.63 -0.20 1.33 16 22 N -0.46 -6.87 10.02 -9.91 -0.10 -6.97 16 23 C 0.19 2.86 6.75 -83.08 -0.56 2.30 16 24 C 0.03 0.36 7.04 -36.53 -0.26 0.10 16 25 C -0.16 -1.94 10.58 -39.40 -0.42 -2.35 16 26 C -0.22 -2.18 10.89 -39.82 -0.43 -2.61 16 27 C -0.03 -0.27 12.08 29.52 0.36 0.09 16 28 O -0.17 -2.21 10.39 4.76 0.05 -2.16 16 29 C -0.10 -1.59 9.32 -38.61 -0.36 -1.95 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.94 3.28 -51.93 -0.17 0.77 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 37 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 7.36 4.57 -40.82 -0.19 7.17 16 40 H 0.15 2.18 6.52 -52.49 -0.34 1.84 16 41 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.15 2.39 7.58 -52.49 -0.40 1.99 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -31.70 370.68 -7.91 -39.61 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.61 Total: 9.64 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.78 Total: -0.49 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.01 Total: -57.77 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.14 Total: -13.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.23 Total: 17.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.70 -7.91 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027957204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.451 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds