Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48507 * 109.46961 * 271.73164 * 3 2 1 5 5 H 1.48501 * 109.47060 * 31.72566 * 3 2 1 6 6 H 1.48502 * 109.47392 * 151.72922 * 3 2 1 7 7 C 1.38816 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99347 * 341.97779 * 7 2 1 9 9 N 1.36933 * 120.00030 * 161.97446 * 7 2 1 10 10 C 1.47419 * 125.64976 * 323.04079 * 9 7 2 11 11 C 1.54907 * 104.83269 * 155.82808 * 10 9 7 12 12 C 1.55159 * 101.58224 * 37.00954 * 11 10 9 13 13 C 1.47022 * 125.64532 * 142.99486 * 9 7 2 14 14 H 1.09001 * 109.88062 * 300.51741 * 13 9 7 15 15 C 1.52995 * 109.88620 * 61.68678 * 13 9 7 16 16 N 1.46502 * 109.46811 * 295.44731 * 15 13 9 17 17 C 1.34780 * 120.00052 * 173.57390 * 16 15 13 18 18 O 1.21555 * 119.99686 * 0.02562 * 17 16 15 19 19 C 1.47866 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.39680 * 120.07284 * 359.71965 * 19 17 16 21 21 C 1.38050 * 120.14545 * 179.71964 * 20 19 17 22 22 C 1.38098 * 120.30215 * 0.56302 * 21 20 19 23 23 C 1.39644 * 120.14602 * 359.71899 * 22 21 20 24 24 C 1.47841 * 120.07683 * 179.97438 * 23 22 21 25 25 C 1.35762 * 126.58364 * 359.73251 * 24 23 22 26 26 N 1.34145 * 107.52162 * 179.89794 * 25 24 23 27 27 C 1.30364 * 108.89692 * 0.37087 * 26 25 24 28 28 O 1.34003 * 109.03215 * 359.76983 * 27 26 25 29 29 C 1.39309 * 120.07521 * 180.02562 * 19 17 16 30 30 H 0.96995 * 120.00294 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.36595 * 36.99247 * 10 9 7 32 32 H 1.08998 * 110.46122 * 274.71384 * 10 9 7 33 33 H 1.08999 * 111.00703 * 278.93890 * 11 10 9 34 34 H 1.08996 * 111.00638 * 155.08419 * 11 10 9 35 35 H 1.09003 * 110.71585 * 82.86053 * 12 11 10 36 36 H 1.08992 * 110.72261 * 206.13112 * 12 11 10 37 37 H 1.09001 * 109.47606 * 55.44876 * 15 13 9 38 38 H 1.09004 * 109.47426 * 175.44877 * 15 13 9 39 39 H 0.96994 * 120.00556 * 353.57649 * 16 15 13 40 40 H 1.08007 * 119.92510 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.85279 * 180.28636 * 21 20 19 42 42 H 1.08000 * 119.92532 * 179.69892 * 22 21 20 43 43 H 1.08004 * 126.24308 * 0.02562 * 25 24 23 44 44 H 1.07997 * 125.48260 * 179.76198 * 27 26 25 45 45 H 1.07994 * 120.14948 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4611 2.0675 -1.3995 5 1 1.4664 2.6418 0.7362 6 1 3.5656 1.4299 0.6631 7 6 2.0103 -1.2021 0.0005 8 1 1.5100 -2.1144 0.2903 9 7 3.3293 -1.2314 -0.3664 10 6 3.9434 -0.4160 -1.4300 11 6 5.4432 -0.3344 -1.0510 12 6 5.6970 -1.7531 -0.4763 13 6 4.3675 -2.0804 0.2358 14 1 4.4536 -1.8620 1.3002 15 6 4.0170 -3.5555 0.0309 16 7 2.7839 -3.8697 0.7569 17 6 2.2098 -5.0811 0.6173 18 8 2.7154 -5.9130 -0.1106 19 6 0.9649 -5.3981 1.3495 20 6 0.3857 -4.4454 2.1908 21 6 -0.7797 -4.7377 2.8707 22 6 -1.3745 -5.9764 2.7333 23 6 -0.8029 -6.9403 1.9000 24 6 -1.4407 -8.2661 1.7546 25 6 -2.5749 -8.6901 2.3685 26 7 -2.8075 -9.9476 1.9633 27 6 -1.8634 -10.3072 1.1394 28 8 -1.0034 -9.2905 0.9897 29 6 0.3704 -6.6499 1.2067 30 1 -0.4850 0.8400 -0.0004 31 1 3.5017 0.5803 -1.4471 32 1 3.8229 -0.9004 -2.3990 33 1 5.6137 0.4303 -0.2932 34 1 6.0595 -0.1537 -1.9317 35 1 5.8902 -2.4652 -1.2786 36 1 6.5224 -1.7389 0.2353 37 1 3.8728 -3.7506 -1.0317 38 1 4.8290 -4.1777 0.4076 39 1 2.3806 -3.2060 1.3379 40 1 0.8480 -3.4760 2.3059 41 1 -1.2259 -3.9958 3.5164 42 1 -2.2835 -6.2003 3.2718 43 1 -3.1808 -8.1186 3.0560 44 1 -1.7866 -11.2696 0.6555 45 1 0.8170 -7.3920 0.5617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028237539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = 47.268734 kcal Electronic energy + Delta-G solvation = -28976.753790 eV Core-core repulsion = 24961.891171 eV Total energy + Delta-G solvation = -4014.862618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.43935 -39.96867 -38.50012 -37.67101 -34.94669 -34.19095 -32.80328 -32.65010 -31.20658 -30.04901 -29.55281 -28.55704 -25.31172 -24.34952 -23.82151 -23.24969 -22.16155 -21.45697 -20.89281 -19.95168 -19.59204 -18.40135 -17.44717 -16.73552 -16.61758 -16.27476 -16.08887 -15.71650 -15.20721 -14.86331 -14.69303 -14.50293 -14.15350 -13.84188 -13.67513 -13.36886 -13.23364 -13.15846 -12.78228 -12.53214 -12.30136 -12.04887 -11.78272 -11.58427 -11.41713 -11.36067 -11.30326 -10.98073 -10.80842 -10.76776 -10.54143 -10.25388 -10.02098 -9.91685 -9.66149 -9.54315 -9.03805 -8.66590 -8.44924 -8.22196 -6.91089 -6.11372 -3.57233 0.48539 1.02233 1.79366 2.49154 2.53437 3.15689 3.23817 3.37755 3.42734 3.58637 3.99581 4.01951 4.41396 4.48368 4.77399 4.82225 4.85271 4.86716 5.06273 5.11270 5.17653 5.27248 5.28585 5.38208 5.45106 5.48072 5.59947 5.76540 5.81768 5.88834 5.91289 6.03470 6.06887 6.08089 6.21291 6.24462 6.29312 6.33104 6.34610 6.38181 6.54974 6.73939 6.79188 6.80535 6.96226 7.47246 7.78867 8.00849 8.20392 8.62182 8.70010 9.53221 10.13612 11.02389 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.002768 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.134912 B =10114.478920 C =11320.881402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.115 3.885 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.700 5.700 17 C 0.553 3.447 18 O -0.554 6.554 19 C -0.123 4.123 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.074 4.074 23 C -0.038 4.038 24 C 0.013 3.987 25 C -0.031 4.031 26 N -0.487 5.487 27 C 0.167 3.833 28 O -0.196 6.196 29 C -0.041 4.041 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.187 0.813 44 H 0.251 0.749 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -11.561 5.716 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.164 4.164 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.106 0.894 9 N -0.327 5.327 10 C -0.009 4.009 11 C -0.175 4.175 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.352 5.352 17 C 0.340 3.660 18 O -0.435 6.435 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.092 4.092 23 C -0.039 4.039 24 C -0.040 4.040 25 C -0.171 4.171 26 N -0.215 5.215 27 C -0.058 4.058 28 O -0.082 6.082 29 C -0.060 4.060 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.204 0.796 44 H 0.266 0.734 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.201 -12.408 5.379 13.577 hybrid contribution 0.569 1.719 -0.157 1.817 sum 1.770 -10.690 5.222 12.028 Atomic orbital electron populations 1.69809 1.05791 1.26957 1.51343 1.25458 0.95147 0.97981 0.97817 0.86739 0.80050 0.84033 0.77154 1.21424 1.23162 1.19379 1.18624 0.82615 0.93929 1.43605 0.89396 1.44670 1.05176 1.46819 1.36033 1.21919 0.90925 0.95622 0.92417 1.22780 0.97553 0.96828 1.00303 1.22485 0.96464 0.97163 0.99836 1.21298 0.88969 0.89498 0.96756 0.93378 1.21968 0.84931 0.97092 0.96974 1.46106 1.27068 1.14489 1.47543 1.18155 0.83777 0.82489 0.81614 1.90718 1.64739 1.48256 1.39746 1.19965 0.97271 0.95093 1.00296 1.21681 0.94797 0.98629 0.92855 1.21035 0.95661 0.96364 1.00477 1.21170 0.99190 0.92460 0.96371 1.17467 0.96211 0.88908 1.01285 1.21462 0.96859 0.89095 0.96608 1.23271 0.97288 0.92401 1.04108 1.70339 1.25524 1.13025 1.12580 1.28113 0.85273 0.93920 0.98461 1.84514 1.47688 1.21468 1.54567 1.21306 0.92772 0.95961 0.96003 0.92508 0.93891 0.95091 0.91626 0.91524 0.91224 0.91375 0.91463 0.92705 0.74859 0.84289 0.84323 0.85034 0.79644 0.73375 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.97 55.49 0.78 -24.72 16 2 C 0.04 1.00 5.45 -17.43 -0.09 0.91 16 3 Si 0.89 21.24 24.97 -169.99 -4.25 16.99 16 4 H -0.29 -6.82 6.68 56.52 0.38 -6.44 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.26 -6.55 9.47 -15.06 -0.14 -6.69 16 8 H 0.09 2.27 5.60 -52.48 -0.29 1.97 16 9 N -0.60 -13.14 2.65 -162.58 -0.43 -13.57 16 10 C 0.12 2.35 6.27 -2.53 -0.02 2.34 16 11 C -0.14 -2.18 7.09 -24.58 -0.17 -2.36 16 12 C -0.12 -1.78 6.48 -24.89 -0.16 -1.94 16 13 C 0.14 2.53 3.30 -66.95 -0.22 2.30 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 15 C 0.12 2.04 5.15 -4.04 -0.02 2.02 16 16 N -0.70 -12.69 4.29 -61.24 -0.26 -12.96 16 17 C 0.55 10.38 7.77 -12.32 -0.10 10.28 16 18 O -0.55 -11.80 16.32 5.32 0.09 -11.71 16 19 C -0.12 -2.01 5.87 -105.02 -0.62 -2.62 16 20 C -0.06 -0.89 9.54 -39.11 -0.37 -1.26 16 21 C -0.12 -1.42 10.02 -39.70 -0.40 -1.82 16 22 C -0.07 -0.83 9.57 -39.11 -0.37 -1.20 16 23 C -0.04 -0.50 5.87 -105.03 -0.62 -1.12 16 24 C 0.01 0.16 7.07 -36.54 -0.26 -0.09 16 25 C -0.03 -0.35 11.29 -17.43 -0.20 -0.55 16 26 N -0.49 -5.72 11.27 -14.68 -0.17 -5.88 16 27 C 0.17 1.61 13.22 52.14 0.69 2.30 16 28 O -0.20 -2.41 10.58 4.23 0.04 -2.37 16 29 C -0.04 -0.63 9.27 -38.77 -0.36 -0.99 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 0.96 3.28 -51.93 -0.17 0.79 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 7.40 4.41 -40.82 -0.18 7.22 16 40 H 0.14 2.03 6.39 -52.48 -0.34 1.70 16 41 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.13 1.06 7.02 -52.49 -0.37 0.69 16 43 H 0.19 1.57 7.29 -52.48 -0.38 1.19 16 44 H 0.25 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.14 2.20 7.53 -52.49 -0.40 1.80 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -32.94 368.40 -7.57 -40.51 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.50 Total: 8.64 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.43 Total: -0.49 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.08 Total: -57.13 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.13 Total: -14.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.25 Total: 16.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.94 -7.57 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028237539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.779 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds