Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48507 * 109.46961 * 271.73164 * 3 2 1 5 5 H 1.48501 * 109.47060 * 31.72566 * 3 2 1 6 6 H 1.48502 * 109.47392 * 151.72922 * 3 2 1 7 7 C 1.38816 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99347 * 341.97779 * 7 2 1 9 9 N 1.36933 * 120.00030 * 161.97446 * 7 2 1 10 10 C 1.47419 * 125.64976 * 323.04079 * 9 7 2 11 11 C 1.54907 * 104.83269 * 155.82808 * 10 9 7 12 12 C 1.55159 * 101.58224 * 37.00954 * 11 10 9 13 13 C 1.47022 * 125.64532 * 142.99486 * 9 7 2 14 14 H 1.09001 * 109.88062 * 300.51741 * 13 9 7 15 15 C 1.52995 * 109.88620 * 61.68678 * 13 9 7 16 16 N 1.46502 * 109.46811 * 295.44731 * 15 13 9 17 17 C 1.34780 * 120.00052 * 173.57390 * 16 15 13 18 18 O 1.21555 * 119.99686 * 0.02562 * 17 16 15 19 19 C 1.47866 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.39680 * 120.07284 * 359.71965 * 19 17 16 21 21 C 1.38050 * 120.14545 * 179.71964 * 20 19 17 22 22 C 1.38098 * 120.30215 * 0.56302 * 21 20 19 23 23 C 1.39644 * 120.14602 * 359.71899 * 22 21 20 24 24 C 1.47841 * 120.07683 * 179.97438 * 23 22 21 25 25 C 1.35762 * 126.58364 * 359.73251 * 24 23 22 26 26 N 1.34145 * 107.52162 * 179.89794 * 25 24 23 27 27 C 1.30364 * 108.89692 * 0.37087 * 26 25 24 28 28 O 1.34003 * 109.03215 * 359.76983 * 27 26 25 29 29 C 1.39309 * 120.07521 * 180.02562 * 19 17 16 30 30 H 0.96995 * 120.00294 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.36595 * 36.99247 * 10 9 7 32 32 H 1.08998 * 110.46122 * 274.71384 * 10 9 7 33 33 H 1.08999 * 111.00703 * 278.93890 * 11 10 9 34 34 H 1.08996 * 111.00638 * 155.08419 * 11 10 9 35 35 H 1.09003 * 110.71585 * 82.86053 * 12 11 10 36 36 H 1.08992 * 110.72261 * 206.13112 * 12 11 10 37 37 H 1.09001 * 109.47606 * 55.44876 * 15 13 9 38 38 H 1.09004 * 109.47426 * 175.44877 * 15 13 9 39 39 H 0.96994 * 120.00556 * 353.57649 * 16 15 13 40 40 H 1.08007 * 119.92510 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.85279 * 180.28636 * 21 20 19 42 42 H 1.08000 * 119.92532 * 179.69892 * 22 21 20 43 43 H 1.08004 * 126.24308 * 0.02562 * 25 24 23 44 44 H 1.07997 * 125.48260 * 179.76198 * 27 26 25 45 45 H 1.07994 * 120.14948 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4611 2.0675 -1.3995 5 1 1.4664 2.6418 0.7362 6 1 3.5656 1.4299 0.6631 7 6 2.0103 -1.2021 0.0005 8 1 1.5100 -2.1144 0.2903 9 7 3.3293 -1.2314 -0.3664 10 6 3.9434 -0.4160 -1.4300 11 6 5.4432 -0.3344 -1.0510 12 6 5.6970 -1.7531 -0.4763 13 6 4.3675 -2.0804 0.2358 14 1 4.4536 -1.8620 1.3002 15 6 4.0170 -3.5555 0.0309 16 7 2.7839 -3.8697 0.7569 17 6 2.2098 -5.0811 0.6173 18 8 2.7154 -5.9130 -0.1106 19 6 0.9649 -5.3981 1.3495 20 6 0.3857 -4.4454 2.1908 21 6 -0.7797 -4.7377 2.8707 22 6 -1.3745 -5.9764 2.7333 23 6 -0.8029 -6.9403 1.9000 24 6 -1.4407 -8.2661 1.7546 25 6 -2.5749 -8.6901 2.3685 26 7 -2.8075 -9.9476 1.9633 27 6 -1.8634 -10.3072 1.1394 28 8 -1.0034 -9.2905 0.9897 29 6 0.3704 -6.6499 1.2067 30 1 -0.4850 0.8400 -0.0004 31 1 3.5017 0.5803 -1.4471 32 1 3.8229 -0.9004 -2.3990 33 1 5.6137 0.4303 -0.2932 34 1 6.0595 -0.1537 -1.9317 35 1 5.8902 -2.4652 -1.2786 36 1 6.5224 -1.7389 0.2353 37 1 3.8728 -3.7506 -1.0317 38 1 4.8290 -4.1777 0.4076 39 1 2.3806 -3.2060 1.3379 40 1 0.8480 -3.4760 2.3059 41 1 -1.2259 -3.9958 3.5164 42 1 -2.2835 -6.2003 3.2718 43 1 -3.1808 -8.1186 3.0560 44 1 -1.7866 -11.2696 0.6555 45 1 0.8170 -7.3920 0.5617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028237539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 24.209241 kcal Electronic energy + Delta-G solvation = -28977.753724 eV Core-core repulsion = 24961.891171 eV Total energy + Delta-G solvation = -4015.862553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.29271 -41.29567 -39.82008 -39.07864 -35.81374 -35.67426 -34.62852 -33.75405 -32.31678 -31.76273 -30.89040 -29.56598 -26.76206 -25.91911 -24.91719 -24.35392 -23.27316 -22.44361 -22.24498 -21.45231 -20.91177 -19.64580 -18.73441 -18.00073 -17.86035 -17.61512 -17.33165 -16.96638 -16.52549 -16.27716 -15.96327 -15.80904 -15.29586 -15.01375 -14.85733 -14.83439 -14.69408 -14.31003 -14.17039 -13.97352 -13.68035 -13.60986 -13.05000 -12.95574 -12.78862 -12.63892 -12.45580 -12.42569 -12.27556 -12.06667 -11.73204 -11.68430 -11.53337 -11.38993 -11.02275 -11.01595 -10.63703 -10.20219 -9.90444 -9.17611 -8.72348 -8.14778 -5.56515 -0.49551 -0.10594 0.85697 1.32614 1.42033 1.52853 1.64976 1.69529 1.89894 2.22780 2.45869 2.81293 3.06307 3.33910 3.36657 3.50868 3.67278 3.82851 3.91260 3.97066 3.99477 4.08550 4.10986 4.14527 4.28900 4.31343 4.46952 4.50797 4.66210 4.73099 4.74741 4.83741 4.86115 4.87094 5.00051 5.00668 5.14056 5.23525 5.27189 5.30200 5.31604 5.34424 5.47260 5.50458 5.72501 5.91356 6.22883 6.53504 6.64455 6.83953 7.16144 7.57090 8.24512 9.02040 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.002768 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.134912 B =10114.478920 C =11320.881402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.017 4.017 3 Si 0.943 3.057 4 H -0.289 1.289 5 H -0.314 1.314 6 H -0.254 1.254 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.111 4.111 13 C 0.139 3.861 14 H 0.054 0.946 15 C 0.119 3.881 16 N -0.700 5.700 17 C 0.547 3.453 18 O -0.589 6.589 19 C -0.145 4.145 20 C -0.074 4.074 21 C -0.112 4.112 22 C -0.059 4.059 23 C -0.034 4.034 24 C -0.021 4.021 25 C -0.018 4.018 26 N -0.516 5.516 27 C 0.186 3.814 28 O -0.216 6.216 29 C -0.059 4.059 30 H 0.261 0.739 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.412 0.588 40 H 0.131 0.869 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.214 0.786 44 H 0.295 0.705 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -12.168 6.873 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.214 4.214 3 Si 0.774 3.226 4 H -0.217 1.217 5 H -0.243 1.243 6 H -0.179 1.179 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.344 5.344 10 C -0.022 4.022 11 C -0.164 4.164 12 C -0.149 4.149 13 C 0.033 3.967 14 H 0.072 0.928 15 C -0.006 4.006 16 N -0.351 5.351 17 C 0.336 3.664 18 O -0.472 6.472 19 C -0.148 4.148 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.077 4.077 23 C -0.035 4.035 24 C -0.073 4.073 25 C -0.156 4.156 26 N -0.244 5.244 27 C -0.039 4.039 28 O -0.103 6.103 29 C -0.078 4.078 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.149 0.851 41 H 0.185 0.815 42 H 0.191 0.809 43 H 0.230 0.770 44 H 0.310 0.690 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.946 -13.009 6.545 14.692 hybrid contribution 0.288 1.691 -0.547 1.800 sum 2.235 -11.318 5.998 13.003 Atomic orbital electron populations 1.69925 1.07159 1.27167 1.54484 1.25992 0.95628 1.00736 0.99003 0.85858 0.79300 0.80656 0.76776 1.21691 1.24298 1.17857 1.18722 0.84242 0.93259 1.40948 0.90893 1.44848 1.04969 1.47521 1.37035 1.22079 0.94029 0.94116 0.91935 1.22749 0.94320 0.97607 1.01692 1.22523 0.95303 0.96445 1.00620 1.21512 0.89597 0.88317 0.97284 0.92813 1.21962 0.85397 0.97620 0.95643 1.46161 1.27279 1.14337 1.47359 1.18613 0.84400 0.82157 0.81259 1.90675 1.65943 1.49180 1.41411 1.19834 0.97002 0.96252 1.01711 1.21698 0.96090 0.97965 0.93535 1.21387 0.94401 0.97358 0.99787 1.21605 0.99822 0.91227 0.95071 1.17641 0.95226 0.89928 1.00693 1.21462 0.98060 0.89266 0.98536 1.23733 0.96437 0.92300 1.03164 1.70407 1.26612 1.13429 1.13983 1.29240 0.83562 0.94360 0.96701 1.84522 1.48650 1.22137 1.54988 1.21224 0.94145 0.95379 0.97047 0.92981 0.95798 0.95617 0.91520 0.88404 0.90030 0.87973 0.93820 0.90538 0.74865 0.85127 0.81483 0.80935 0.76982 0.69028 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 13.97 21.65 0.30 -54.97 16 2 C -0.02 -0.90 5.45 84.86 0.46 -0.44 16 3 Si 0.94 44.42 24.97 68.60 1.71 46.14 16 4 H -0.29 -13.54 6.68 99.48 0.66 -12.87 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 6 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.24 -12.47 9.47 84.03 0.80 -11.67 16 8 H 0.07 3.91 5.60 -2.91 -0.02 3.90 16 9 N -0.62 -26.77 2.65 -668.28 -1.77 -28.54 16 10 C 0.10 4.06 6.27 86.86 0.54 4.61 16 11 C -0.13 -3.60 7.09 31.99 0.23 -3.38 16 12 C -0.11 -2.86 6.48 31.78 0.21 -2.66 16 13 C 0.14 4.75 3.30 45.34 0.15 4.90 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C 0.12 4.19 5.15 86.38 0.44 4.64 16 16 N -0.70 -26.30 4.29 -465.94 -2.00 -28.29 16 17 C 0.55 21.68 7.77 86.79 0.67 22.36 16 18 O -0.59 -26.47 16.32 -3.89 -0.06 -26.54 16 19 C -0.14 -4.98 5.87 -20.12 -0.12 -5.10 16 20 C -0.07 -2.21 9.54 22.57 0.22 -2.00 16 21 C -0.11 -2.55 10.02 22.19 0.22 -2.33 16 22 C -0.06 -1.22 9.57 22.58 0.22 -1.00 16 23 C -0.03 -0.89 5.87 -20.13 -0.12 -1.01 16 24 C -0.02 -0.50 7.07 24.24 0.17 -0.33 16 25 C -0.02 -0.36 11.29 83.77 0.95 0.59 16 26 N -0.52 -11.01 11.27 -315.07 -3.55 -14.56 16 27 C 0.19 3.21 13.22 130.46 1.72 4.94 16 28 O -0.22 -5.19 10.58 -7.77 -0.08 -5.27 16 29 C -0.06 -1.89 9.27 22.80 0.21 -1.67 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.02 1.05 3.28 -2.39 -0.01 1.04 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 1.95 7.85 -2.39 -0.02 1.94 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.74 8.12 -2.39 -0.02 1.72 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.41 15.40 4.41 -92.71 -0.41 14.99 16 40 H 0.13 4.03 6.39 -2.91 -0.02 4.01 16 41 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 42 H 0.17 2.07 7.02 -2.91 -0.02 2.05 16 43 H 0.21 2.84 7.29 -2.91 -0.02 2.82 16 44 H 0.29 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.12 4.20 7.53 -2.91 -0.02 4.18 16 Total: -1.00 -75.16 368.40 2.12 -73.04 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.59 Total: 28.55 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.97 Total: 10.45 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.02 Total: -126.37 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.15 Total: -31.80 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.71 Total: 46.14 kcal Total: -75.16 2.12 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028237539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.253 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds