Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21692 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.46668 * 119.99976 * 179.97438 * 16 15 14 19 19 C 1.36723 * 125.86065 * 180.02562 * 18 16 15 20 20 C 1.39912 * 106.91650 * 179.97438 * 19 18 16 21 21 C 1.36512 * 107.02383 * 359.97438 * 20 19 18 22 22 C 1.47730 * 125.76985 * 179.97438 * 21 20 19 23 23 C 1.40037 * 120.93344 * 359.71788 * 22 21 20 24 24 C 1.37948 * 118.98534 * 179.75211 * 23 22 21 25 25 N 1.31929 * 120.91174 * 0.54076 * 24 23 22 26 26 C 1.31929 * 122.07049 * 359.73126 * 25 24 23 27 27 C 1.37942 * 120.91553 * 359.97438 * 26 25 24 28 28 O 1.34395 * 108.46160 * 359.77231 * 21 20 19 29 29 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 32 32 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 33 33 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 34 34 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 35 35 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 36 36 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 37 37 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 38 38 H 1.07996 * 126.54076 * 359.97438 * 19 18 16 39 39 H 1.08007 * 126.48991 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.50738 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.54123 * 180.26729 * 24 23 22 42 42 H 1.08007 * 119.54462 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.51122 * 180.02562 * 27 26 25 44 44 H 1.09002 * 110.36518 * 322.70049 * 29 9 7 45 45 H 1.08995 * 110.36673 * 84.91158 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9592 -8.5964 0.3062 18 6 3.9084 -8.4340 -0.9550 19 6 4.4005 -9.6928 -0.7485 20 6 5.6060 -9.7794 -1.4534 21 6 5.8011 -8.5728 -2.0612 22 6 6.9524 -8.2114 -2.9134 23 6 7.9791 -9.1302 -3.1639 24 6 9.0328 -8.7518 -3.9698 25 7 9.0861 -7.5415 -4.4921 26 6 8.1434 -6.6438 -4.2774 27 6 7.0506 -6.9384 -3.4889 28 8 4.7665 -7.7707 -1.7570 29 6 1.9333 -3.7312 -0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5503 -2.0832 0.9095 32 1 -0.5617 -2.0533 -0.8759 33 1 -1.3017 -4.2523 -0.6628 34 1 -0.6290 -4.4190 0.9906 35 1 1.0780 -6.1265 0.9518 36 1 0.1986 -6.7069 -0.4828 37 1 2.8421 -6.0795 -1.2533 38 1 3.9454 -10.4717 -0.1546 39 1 6.2583 -10.6386 -1.5071 40 1 7.9443 -10.1213 -2.7362 41 1 9.8273 -9.4547 -4.1725 42 1 8.2281 -5.6649 -4.7258 43 1 6.2825 -6.1987 -3.3178 44 1 2.8303 -3.7416 -0.6198 45 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028593113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = 40.538288 kcal Electronic energy + Delta-G solvation = -28025.627863 eV Core-core repulsion = 24010.473390 eV Total energy + Delta-G solvation = -4015.154472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.09593 -40.39510 -39.62094 -37.69935 -34.91341 -34.17201 -33.27916 -32.56658 -31.68397 -30.27346 -29.41325 -28.22403 -25.85958 -24.84373 -24.14568 -23.53365 -22.11946 -21.75427 -20.67565 -19.99862 -19.93500 -18.75044 -17.63428 -16.82621 -16.79804 -16.56647 -16.23464 -16.06380 -15.44119 -15.04850 -14.72776 -14.54321 -14.30497 -14.23570 -14.12230 -13.63683 -13.41775 -13.39767 -13.13453 -13.10661 -12.39585 -12.07380 -12.05961 -11.79960 -11.45913 -11.03809 -10.93049 -10.83962 -10.69090 -10.35878 -10.30561 -10.10180 -10.00002 -9.96564 -9.89328 -9.69511 -9.66422 -9.20751 -8.63380 -8.61393 -6.86552 -5.74335 -3.08003 -0.01275 0.66178 1.13381 2.09176 2.10683 2.96448 3.01138 3.37637 3.40043 3.43147 3.45650 3.88118 4.00955 4.29086 4.42816 4.46437 4.47944 4.61702 4.65666 5.01387 5.06405 5.11431 5.16848 5.23469 5.30350 5.33414 5.36054 5.49836 5.57968 5.60379 5.64747 5.82497 5.92859 5.95094 5.98773 6.15515 6.22338 6.29131 6.43409 6.45490 6.48469 6.62512 6.85486 7.32710 7.49928 7.53195 7.59891 7.79856 7.91308 8.22908 9.19144 9.79419 10.45123 11.37509 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009961 B = 0.002528 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.249053 B =11073.384427 C =13604.609391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.081 0.919 14 C 0.131 3.869 15 N -0.710 5.710 16 C 0.598 3.402 17 O -0.521 6.521 18 C -0.054 4.054 19 C -0.124 4.124 20 C -0.185 4.185 21 C 0.044 3.956 22 C 0.025 3.975 23 C -0.151 4.151 24 C 0.104 3.896 25 N -0.482 5.482 26 C 0.107 3.893 27 C -0.153 4.153 28 O -0.152 6.152 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.407 0.593 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.035 0.965 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.677 -21.304 -6.745 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.359 5.359 16 C 0.383 3.617 17 O -0.399 6.399 18 C -0.107 4.107 19 C -0.144 4.144 20 C -0.205 4.205 21 C -0.008 4.008 22 C 0.017 3.983 23 C -0.171 4.171 24 C -0.052 4.052 25 N -0.191 5.191 26 C -0.049 4.049 27 C -0.173 4.173 28 O -0.048 6.048 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.163 0.837 44 H 0.053 0.947 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.764 -20.986 -6.857 25.502 hybrid contribution -0.051 0.826 0.370 0.907 sum 12.712 -20.160 -6.487 24.700 Atomic orbital electron populations 1.69973 1.04890 1.24947 1.57097 1.24811 0.95737 0.97709 1.02234 0.86047 0.78711 0.83751 0.77267 1.20503 1.21734 1.21728 1.19096 0.90436 0.82405 1.43766 0.90439 1.44487 1.01739 0.99831 1.87186 1.21156 0.84314 0.88122 1.01181 1.22864 0.95326 0.99408 0.99716 1.22632 0.98830 0.91735 1.00657 0.90070 1.21534 0.84545 0.94109 0.99035 1.46020 1.25368 1.12999 1.51563 1.16523 0.82301 0.82233 0.80598 1.90892 1.52362 1.58815 1.37802 1.22363 0.94244 0.93533 1.00527 1.21886 0.95339 0.96337 1.00876 1.21790 0.99161 0.98090 1.01409 1.20490 0.89175 0.89959 1.01201 1.18081 0.90875 0.94630 0.94723 1.22103 0.94232 1.00418 1.00377 1.22724 0.96643 0.93218 0.92664 1.67669 1.27773 1.02452 1.21250 1.22802 0.88887 0.98882 0.94369 1.22410 1.00415 0.96454 0.97987 1.84077 1.27605 1.40436 1.52656 1.21574 0.93911 0.86232 0.96787 0.93777 0.93851 0.93474 0.91887 0.92113 0.90797 0.91101 0.75737 0.81617 0.82108 0.84014 0.82013 0.81911 0.83718 0.94678 0.96274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -15.19 3.39 -170.05 -0.58 -15.77 16 10 C 0.18 4.20 5.37 -3.06 -0.02 4.19 16 11 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16 12 C -0.12 -1.91 3.11 -88.46 -0.27 -2.18 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.81 5.12 -4.05 -0.02 1.79 16 15 N -0.71 -9.14 5.40 -61.63 -0.33 -9.47 16 16 C 0.60 8.18 7.79 -12.86 -0.10 8.08 16 17 O -0.52 -8.46 16.86 5.20 0.09 -8.37 16 18 C -0.05 -0.64 7.12 -36.73 -0.26 -0.90 16 19 C -0.12 -1.24 10.59 -39.50 -0.42 -1.66 16 20 C -0.18 -1.54 10.26 -39.58 -0.41 -1.95 16 21 C 0.04 0.42 7.05 -36.33 -0.26 0.17 16 22 C 0.03 0.22 5.91 -104.67 -0.62 -0.40 16 23 C -0.15 -1.00 9.64 -39.01 -0.38 -1.37 16 24 C 0.10 0.72 11.17 -17.62 -0.20 0.52 16 25 N -0.48 -4.37 10.34 -13.35 -0.14 -4.50 16 26 C 0.11 0.88 11.17 -17.62 -0.20 0.68 16 27 C -0.15 -1.30 9.82 -39.01 -0.38 -1.68 16 28 O -0.15 -1.71 10.23 3.83 0.04 -1.67 16 29 C 0.14 2.78 6.41 -2.52 -0.02 2.76 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 32 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.41 4.78 8.09 -40.82 -0.33 4.45 16 38 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.16 0.82 7.33 -52.48 -0.38 0.43 16 40 H 0.14 0.54 7.11 -52.49 -0.37 0.17 16 41 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.14 1.13 7.99 -52.49 -0.42 0.71 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -33.50 382.58 -9.60 -43.10 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.04 Total: 1.63 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.95 Total: -1.30 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.48 Total: -56.07 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.13 Total: -10.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.50 -9.60 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028593113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.635 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds