Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21692 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.46668 * 119.99976 * 179.97438 * 16 15 14 19 19 C 1.36723 * 125.86065 * 180.02562 * 18 16 15 20 20 C 1.39912 * 106.91650 * 179.97438 * 19 18 16 21 21 C 1.36512 * 107.02383 * 359.97438 * 20 19 18 22 22 C 1.47730 * 125.76985 * 179.97438 * 21 20 19 23 23 C 1.40037 * 120.93344 * 359.71788 * 22 21 20 24 24 C 1.37948 * 118.98534 * 179.75211 * 23 22 21 25 25 N 1.31929 * 120.91174 * 0.54076 * 24 23 22 26 26 C 1.31929 * 122.07049 * 359.73126 * 25 24 23 27 27 C 1.37942 * 120.91553 * 359.97438 * 26 25 24 28 28 O 1.34395 * 108.46160 * 359.77231 * 21 20 19 29 29 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 32 32 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 33 33 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 34 34 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 35 35 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 36 36 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 37 37 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 38 38 H 1.07996 * 126.54076 * 359.97438 * 19 18 16 39 39 H 1.08007 * 126.48991 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.50738 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.54123 * 180.26729 * 24 23 22 42 42 H 1.08007 * 119.54462 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.51122 * 180.02562 * 27 26 25 44 44 H 1.09002 * 110.36518 * 322.70049 * 29 9 7 45 45 H 1.08995 * 110.36673 * 84.91158 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9592 -8.5964 0.3062 18 6 3.9084 -8.4340 -0.9550 19 6 4.4005 -9.6928 -0.7485 20 6 5.6060 -9.7794 -1.4534 21 6 5.8011 -8.5728 -2.0612 22 6 6.9524 -8.2114 -2.9134 23 6 7.9791 -9.1302 -3.1639 24 6 9.0328 -8.7518 -3.9698 25 7 9.0861 -7.5415 -4.4921 26 6 8.1434 -6.6438 -4.2774 27 6 7.0506 -6.9384 -3.4889 28 8 4.7665 -7.7707 -1.7570 29 6 1.9333 -3.7312 -0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5503 -2.0832 0.9095 32 1 -0.5617 -2.0533 -0.8759 33 1 -1.3017 -4.2523 -0.6628 34 1 -0.6290 -4.4190 0.9906 35 1 1.0780 -6.1265 0.9518 36 1 0.1986 -6.7069 -0.4828 37 1 2.8421 -6.0795 -1.2533 38 1 3.9454 -10.4717 -0.1546 39 1 6.2583 -10.6386 -1.5071 40 1 7.9443 -10.1213 -2.7362 41 1 9.8273 -9.4547 -4.1725 42 1 8.2281 -5.6649 -4.7258 43 1 6.2825 -6.1987 -3.3178 44 1 2.8303 -3.7416 -0.6198 45 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028593113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 19.194917 kcal Electronic energy + Delta-G solvation = -28026.553381 eV Core-core repulsion = 24010.473390 eV Total energy + Delta-G solvation = -4016.079990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.85016 -41.00514 -40.67975 -39.26311 -36.21988 -34.89781 -34.32398 -33.99078 -32.22777 -31.82236 -30.61749 -29.62364 -27.41207 -26.03567 -24.92742 -24.60025 -23.01512 -22.47132 -22.00414 -21.50010 -21.14815 -19.67490 -18.83592 -18.30240 -17.65084 -17.37759 -17.09371 -16.79940 -16.70517 -16.52557 -15.97486 -15.77683 -15.45278 -15.04602 -14.89050 -14.68519 -14.63166 -14.21935 -14.08250 -13.99334 -13.84951 -13.77005 -13.44603 -13.06885 -12.78350 -12.68140 -12.60501 -12.04601 -11.98518 -11.88303 -11.68952 -11.58352 -11.49347 -11.40509 -11.08720 -10.72688 -10.57428 -10.28945 -10.19830 -9.35097 -8.91150 -7.86568 -5.22050 -0.70508 0.12632 0.37023 1.32184 1.42947 1.45005 1.45737 1.56070 2.00379 2.04047 2.48110 2.83501 3.17027 3.31840 3.53776 3.55840 3.61831 3.76540 3.80072 3.93464 3.97705 3.99534 4.02269 4.11132 4.40949 4.42634 4.47258 4.58197 4.60606 4.66914 4.74332 4.76750 4.82962 4.88277 4.94926 5.01543 5.04397 5.06974 5.20171 5.28126 5.39648 5.44469 5.63344 5.67216 5.68698 5.77289 6.19120 6.32281 6.89267 6.94855 7.09446 7.76765 8.40830 9.24112 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009961 B = 0.002528 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.249053 B =11073.384427 C =13604.609391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.089 0.911 14 C 0.142 3.858 15 N -0.707 5.707 16 C 0.601 3.399 17 O -0.552 6.552 18 C -0.084 4.084 19 C -0.116 4.116 20 C -0.176 4.176 21 C 0.040 3.960 22 C 0.007 3.993 23 C -0.140 4.140 24 C 0.100 3.900 25 N -0.507 5.507 26 C 0.096 3.904 27 C -0.166 4.166 28 O -0.165 6.165 29 C 0.137 3.863 30 H 0.246 0.754 31 H 0.004 0.996 32 H 0.013 0.987 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.175 0.825 41 H 0.193 0.807 42 H 0.176 0.824 43 H 0.143 0.857 44 H 0.044 0.956 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.651 -23.760 -7.349 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.357 5.357 16 C 0.388 3.612 17 O -0.433 6.433 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.195 4.195 21 C -0.012 4.012 22 C -0.001 4.001 23 C -0.160 4.160 24 C -0.057 4.057 25 N -0.216 5.216 26 C -0.059 4.059 27 C -0.185 4.185 28 O -0.061 6.061 29 C 0.012 3.988 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.195 0.805 39 H 0.215 0.785 40 H 0.192 0.808 41 H 0.210 0.790 42 H 0.193 0.807 43 H 0.161 0.839 44 H 0.063 0.937 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.766 -23.462 -7.472 28.711 hybrid contribution -0.546 1.532 0.529 1.710 sum 14.219 -21.930 -6.943 27.043 Atomic orbital electron populations 1.70195 1.06301 1.25184 1.58392 1.25661 0.96637 1.01063 1.02709 0.85019 0.78225 0.79455 0.76698 1.18920 1.21806 1.22060 1.19493 0.90990 0.83770 1.42772 0.90005 1.44816 1.02569 1.01159 1.86993 1.20934 0.83722 0.91925 0.97716 1.22723 0.97001 0.94830 1.01435 1.22429 0.96194 0.92252 1.00757 0.89271 1.21331 0.85575 0.92522 0.98685 1.45936 1.25124 1.13084 1.51510 1.16673 0.82642 0.81905 0.80011 1.90866 1.53596 1.59518 1.39303 1.22091 0.94531 0.94481 1.02567 1.22197 0.95628 0.95704 1.00161 1.22180 0.98729 0.98601 0.99998 1.20906 0.88886 0.90325 1.01069 1.18286 0.91347 0.95243 0.95231 1.22448 0.92918 1.01258 0.99338 1.23291 0.97447 0.92961 0.91978 1.67697 1.28266 1.03542 1.22121 1.23024 0.88802 0.99561 0.94562 1.22491 1.00665 0.96867 0.98515 1.84044 1.28108 1.41051 1.52897 1.21753 0.95284 0.84599 0.97186 0.94421 0.97725 0.96863 0.89394 0.90758 0.91345 0.89667 0.75099 0.80544 0.78477 0.80782 0.79043 0.80701 0.83947 0.93727 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.31 21.65 0.22 -57.35 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.52 10.28 84.03 0.86 -12.65 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.06 3.39 -691.93 -2.35 -34.40 16 10 C 0.18 8.91 5.37 86.73 0.47 9.37 16 11 C -0.12 -4.17 6.42 31.78 0.20 -3.97 16 12 C -0.10 -2.97 3.11 -9.40 -0.03 -3.00 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.14 3.69 5.12 86.38 0.44 4.13 16 15 N -0.71 -17.40 5.40 -467.10 -2.52 -19.93 16 16 C 0.60 15.91 7.79 86.44 0.67 16.59 16 17 O -0.55 -17.53 16.86 -4.32 -0.07 -17.60 16 18 C -0.08 -1.91 7.12 24.12 0.17 -1.74 16 19 C -0.12 -2.10 10.59 22.32 0.24 -1.86 16 20 C -0.18 -2.39 10.26 22.27 0.23 -2.16 16 21 C 0.04 0.69 7.05 24.38 0.17 0.86 16 22 C 0.01 0.11 5.91 -19.89 -0.12 -0.01 16 23 C -0.14 -1.40 9.64 22.64 0.22 -1.19 16 24 C 0.10 1.11 11.17 84.61 0.95 2.05 16 25 N -0.51 -8.43 10.34 -196.17 -2.03 -10.46 16 26 C 0.10 1.51 11.17 84.61 0.94 2.46 16 27 C -0.17 -2.71 9.82 22.64 0.22 -2.49 16 28 O -0.16 -3.54 10.23 -9.19 -0.09 -3.63 16 29 C 0.14 5.32 6.41 86.86 0.56 5.88 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.00 0.25 7.51 -2.39 -0.02 0.23 16 32 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 33 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 35 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 9.28 8.09 -92.71 -0.75 8.53 16 38 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.20 1.05 7.33 -2.91 -0.02 1.03 16 40 H 0.17 0.50 7.11 -2.91 -0.02 0.48 16 41 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.14 2.26 7.99 -2.91 -0.02 2.23 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.02 0.75 8.01 -2.39 -0.02 0.73 16 Total: -1.00 -75.05 382.58 2.12 -72.94 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.27 Total: 13.68 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.66 Total: 8.87 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.68 Total: -122.15 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.17 Total: -21.24 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.05 2.12 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028593113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.131 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds