Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47015 * 299.99941 * 3 2 1 6 6 H 1.48503 * 109.47097 * 60.00198 * 3 2 1 7 7 C 1.38812 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64779 * 359.97149 * 9 7 2 11 11 C 1.54901 * 104.83094 * 155.90940 * 10 9 7 12 12 C 1.55156 * 101.58691 * 37.00621 * 11 10 9 13 13 H 1.09000 * 110.71721 * 83.03833 * 12 11 10 14 14 C 1.52997 * 110.72546 * 206.13627 * 12 11 10 15 15 N 1.46505 * 109.47212 * 182.55775 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21693 * 120.00486 * 0.02562 * 16 15 14 18 18 C 1.46677 * 119.99666 * 180.02562 * 16 15 14 19 19 C 1.36718 * 125.85943 * 180.02562 * 18 16 15 20 20 C 1.39908 * 106.91512 * 179.97438 * 19 18 16 21 21 C 1.36511 * 107.02228 * 359.97438 * 20 19 18 22 22 C 1.47739 * 125.76946 * 179.97438 * 21 20 19 23 23 C 1.40037 * 120.92883 * 359.72976 * 22 21 20 24 24 C 1.37948 * 118.98325 * 179.72658 * 23 22 21 25 25 N 1.31932 * 120.91029 * 0.55252 * 24 23 22 26 26 C 1.31928 * 122.07268 * 359.71734 * 25 24 23 27 27 C 1.37944 * 120.91033 * 0.02562 * 26 25 24 28 28 O 1.34389 * 108.46494 * 359.73981 * 21 20 19 29 29 C 1.47318 * 125.61431 * 180.19651 * 9 7 2 30 30 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36908 * 37.06646 * 10 9 7 32 32 H 1.08998 * 110.45389 * 274.79335 * 10 9 7 33 33 H 1.09007 * 111.00614 * 278.93244 * 11 10 9 34 34 H 1.09004 * 111.04006 * 155.09631 * 11 10 9 35 35 H 1.09002 * 109.47153 * 62.55768 * 14 12 11 36 36 H 1.09001 * 109.46832 * 302.55958 * 14 12 11 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.07996 * 126.54000 * 359.97438 * 19 18 16 39 39 H 1.07999 * 126.48857 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.50821 * 359.97438 * 23 22 21 41 41 H 1.08005 * 119.54542 * 180.29233 * 24 23 22 42 42 H 1.07998 * 119.54748 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.50698 * 180.02562 * 27 26 25 44 44 H 1.08997 * 110.06555 * 61.67733 * 29 9 7 45 45 H 1.09000 * 109.84738 * 300.41661 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9325 -0.6106 12 6 0.7785 -4.7525 -0.0253 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1978 -6.7208 -0.3296 16 6 2.6679 -7.8160 -0.9589 17 8 2.2002 -8.1491 -2.0318 18 6 3.7433 -8.6063 -0.3505 19 6 4.3082 -9.7326 -0.8812 20 6 5.2880 -10.1605 0.0212 21 6 5.2826 -9.2800 1.0643 22 6 6.1582 -9.3434 2.2526 23 6 7.0997 -10.3697 2.3989 24 6 7.9006 -10.3869 3.5219 25 7 7.7808 -9.4609 4.4541 26 6 6.9036 -8.4802 4.3586 27 6 6.0657 -8.3826 3.2671 28 8 4.3497 -8.3426 0.8252 29 6 1.9339 -3.7298 0.0052 30 1 -0.4851 0.8400 0.0004 31 1 -0.5994 -1.7591 -0.6153 32 1 -0.5289 -2.4858 1.0183 33 1 -0.3520 -3.8989 -1.6991 34 1 -1.3590 -4.3333 -0.2775 35 1 1.4510 -5.5574 -1.9069 36 1 0.2416 -6.5590 -1.0688 37 1 2.5703 -6.4555 0.5258 38 1 4.0478 -10.2022 -1.8181 39 1 5.9275 -11.0240 -0.0870 40 1 7.2000 -11.1337 1.6422 41 1 8.6331 -11.1715 3.6417 42 1 6.8405 -7.7436 5.1458 43 1 5.3503 -7.5767 3.1954 44 1 2.5277 -3.8681 0.9087 45 1 2.5624 -3.8542 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028593114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 41.981175 kcal Electronic energy + Delta-G solvation = -27979.485690 eV Core-core repulsion = 23964.393786 eV Total energy + Delta-G solvation = -4015.091904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10472 -40.41097 -39.62284 -37.68694 -34.91154 -34.18358 -33.28920 -32.57797 -31.70094 -30.26643 -29.41378 -28.20324 -25.86369 -24.85399 -24.15995 -23.52536 -22.11872 -21.76406 -20.71649 -20.08088 -19.80936 -18.73859 -17.63243 -16.85047 -16.81751 -16.58133 -16.24662 -16.05415 -15.50112 -15.03884 -14.77551 -14.54289 -14.31851 -14.24985 -14.14013 -13.65757 -13.43262 -13.41164 -13.11551 -12.91674 -12.55332 -12.09028 -11.83530 -11.76397 -11.55539 -11.05156 -10.97877 -10.84603 -10.66502 -10.36600 -10.34282 -10.11085 -10.03984 -10.01257 -9.83476 -9.68135 -9.56256 -9.20751 -8.68203 -8.62269 -6.86791 -5.68369 -3.10104 -0.02391 0.64457 1.12709 2.08362 2.09798 2.96264 3.01297 3.37862 3.38415 3.43439 3.45899 3.87029 3.99218 4.27792 4.41970 4.45869 4.46603 4.60866 4.64223 5.01882 5.04866 5.10165 5.18272 5.23030 5.28781 5.32561 5.34748 5.48776 5.56924 5.60079 5.64440 5.81383 5.92218 5.97449 6.02913 6.13758 6.21719 6.29988 6.43224 6.50730 6.53826 6.66290 6.85030 7.32448 7.47950 7.48222 7.59857 7.82464 7.91489 8.33270 9.19238 9.79854 10.44429 11.35725 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.002341 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.507592 B =11958.578974 C =13870.767852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.130 3.870 15 N -0.710 5.710 16 C 0.598 3.402 17 O -0.520 6.520 18 C -0.053 4.053 19 C -0.124 4.124 20 C -0.184 4.184 21 C 0.043 3.957 22 C 0.026 3.974 23 C -0.151 4.151 24 C 0.104 3.896 25 N -0.482 5.482 26 C 0.107 3.893 27 C -0.153 4.153 28 O -0.153 6.153 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.407 0.593 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.145 0.855 44 H 0.019 0.981 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -23.488 4.316 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.383 3.617 17 O -0.398 6.398 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.204 4.204 21 C -0.009 4.009 22 C 0.017 3.983 23 C -0.171 4.171 24 C -0.052 4.052 25 N -0.192 5.192 26 C -0.050 4.050 27 C -0.173 4.173 28 O -0.048 6.048 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.242 0.758 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.180 0.820 42 H 0.181 0.819 43 H 0.162 0.838 44 H 0.037 0.963 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.829 -23.234 4.475 26.021 hybrid contribution 0.137 0.887 -0.348 0.963 sum 10.965 -22.347 4.127 25.232 Atomic orbital electron populations 1.69801 1.04890 1.24699 1.57702 1.24794 0.95747 0.97752 1.02438 0.85997 0.78653 0.83575 0.77275 1.20534 1.21694 1.21739 1.19122 0.90522 0.82463 1.42954 0.90494 1.44583 1.01953 0.99671 1.86863 1.21934 0.84643 0.92491 0.98248 1.23009 0.95426 0.98566 1.00374 1.22460 0.98481 0.93892 0.98636 0.90467 1.21602 0.88841 0.91685 0.97121 1.46031 1.38640 1.26585 1.24742 1.16528 0.80488 0.80351 0.84322 1.90896 1.58500 1.69900 1.20466 1.22373 1.00659 1.00500 0.87091 1.21889 0.96016 0.95230 1.01308 1.21790 1.02350 1.02186 0.94070 1.20487 0.93178 0.90639 0.96609 1.18080 0.93687 0.95727 0.90764 1.22107 0.96138 0.98594 1.00284 1.22727 0.97053 0.96469 0.88971 1.67668 1.19619 1.02692 1.29183 1.22794 0.90319 0.95301 0.96538 1.22399 1.01022 0.99560 0.94334 1.84072 1.40934 1.44750 1.35053 1.21395 0.93419 0.86016 0.97778 0.93748 0.87460 0.96980 0.91738 0.92018 0.90658 0.91064 0.75831 0.81602 0.82102 0.84000 0.81999 0.81935 0.83759 0.96333 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.27 3.40 -169.83 -0.58 -15.84 16 10 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 11 C -0.13 -2.42 6.54 -24.59 -0.16 -2.58 16 12 C -0.12 -1.86 2.98 -88.78 -0.26 -2.12 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.85 5.00 -4.04 -0.02 1.83 16 15 N -0.71 -9.23 5.43 -61.62 -0.33 -9.56 16 16 C 0.60 8.26 7.79 -12.86 -0.10 8.16 16 17 O -0.52 -8.58 16.86 5.20 0.09 -8.49 16 18 C -0.05 -0.63 7.12 -36.73 -0.26 -0.89 16 19 C -0.12 -1.25 10.59 -39.51 -0.42 -1.67 16 20 C -0.18 -1.53 10.26 -39.58 -0.41 -1.94 16 21 C 0.04 0.41 7.05 -36.32 -0.26 0.15 16 22 C 0.03 0.22 5.91 -104.67 -0.62 -0.40 16 23 C -0.15 -0.98 9.64 -39.01 -0.38 -1.35 16 24 C 0.10 0.70 11.17 -17.61 -0.20 0.51 16 25 N -0.48 -4.28 10.34 -13.35 -0.14 -4.41 16 26 C 0.11 0.85 11.17 -17.62 -0.20 0.65 16 27 C -0.15 -1.27 9.82 -39.02 -0.38 -1.65 16 28 O -0.15 -1.70 10.23 3.86 0.04 -1.66 16 29 C 0.14 2.80 6.67 -2.90 -0.02 2.78 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 4.72 8.15 -40.82 -0.33 4.39 16 38 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.16 0.82 7.33 -52.49 -0.38 0.43 16 40 H 0.14 0.53 7.11 -52.49 -0.37 0.16 16 41 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.14 1.08 7.99 -52.48 -0.42 0.66 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -33.34 381.84 -9.55 -42.89 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.98 Total: 2.20 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.94 Total: -1.70 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.49 Total: -55.97 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.13 Total: -10.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.34 -9.55 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028593114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.875 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds