Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 300.00451 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00340 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21509 * 120.00353 * 0.02562 * 16 15 14 18 18 C 1.48152 * 119.99712 * 180.02562 * 16 15 14 19 19 C 1.40038 * 120.86262 * 359.72440 * 18 16 15 20 20 C 1.38144 * 119.26639 * 179.75268 * 19 18 16 21 21 N 1.31719 * 121.06373 * 0.53701 * 20 19 18 22 22 C 1.32824 * 121.90120 * 359.73618 * 21 20 19 23 23 C 1.47663 * 119.69644 * 180.02562 * 22 21 20 24 24 C 1.36030 * 125.93714 * 359.69112 * 23 22 21 25 25 C 1.40833 * 106.73412 * 179.91023 * 24 23 22 26 26 C 1.34809 * 107.04006 * 0.35623 * 25 24 23 27 27 O 1.34229 * 108.68580 * 359.77740 * 26 25 24 28 28 C 1.39468 * 120.86421 * 180.02562 * 18 16 15 29 29 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 30 30 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 31 31 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 32 32 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 33 33 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 34 34 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 35 35 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 36 36 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 37 37 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.36298 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.46953 * 180.25116 * 20 19 18 40 40 H 1.08002 * 126.62971 * 0.02562 * 24 23 22 41 41 H 1.07996 * 126.47384 * 180.12871 * 25 24 23 42 42 H 1.08004 * 125.65022 * 179.75989 * 26 25 24 43 43 H 1.07993 * 120.55661 * 359.95202 * 28 18 16 44 44 H 1.08998 * 109.88206 * 59.48273 * 29 9 7 45 45 H 1.09007 * 109.88177 * 298.32145 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1757 -8.1698 2.0140 18 6 3.6616 -8.6886 0.2836 19 6 4.1781 -8.3489 -0.9729 20 6 5.1556 -9.1443 -1.5388 21 7 5.5994 -10.2193 -0.9203 22 6 5.1370 -10.5857 0.2697 23 6 5.6697 -11.7999 0.9194 24 6 6.6217 -12.6265 0.4085 25 6 6.8238 -13.6475 1.3572 26 6 5.9886 -13.4014 2.3864 27 8 5.2933 -12.2849 2.1185 28 6 4.1521 -9.8329 0.9121 29 6 1.9319 -3.7274 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5290 -2.4860 -1.0162 32 1 -0.5991 -1.7588 0.6182 33 1 -1.3585 -4.3328 0.2810 34 1 -0.3505 -3.8984 1.7017 35 1 1.4902 -5.5610 1.8930 36 1 0.2283 -6.5362 1.1025 37 1 2.5066 -6.5062 -0.5666 38 1 3.8188 -7.4728 -1.4922 39 1 5.5592 -8.8831 -2.5059 40 1 7.1263 -12.5193 -0.5404 41 1 7.5145 -14.4736 1.2741 42 1 5.8944 -14.0031 3.2784 43 1 3.7770 -10.1313 1.8799 44 1 2.5596 -3.8509 0.8809 45 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028618716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = 46.203377 kcal Electronic energy + Delta-G solvation = -27785.327231 eV Core-core repulsion = 23770.418415 eV Total energy + Delta-G solvation = -4014.908816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91866 -40.83035 -39.32298 -37.69368 -34.89255 -33.74967 -33.08885 -32.56115 -32.38906 -29.88621 -29.01155 -28.35015 -25.99835 -24.91835 -24.17100 -23.31223 -21.95243 -21.63179 -20.67151 -20.04786 -19.78909 -18.66109 -17.48044 -16.91098 -16.81713 -16.47361 -16.11710 -15.82191 -15.67037 -15.37266 -14.88753 -14.64294 -14.42660 -14.11322 -13.92404 -13.66049 -13.27367 -13.18044 -12.91499 -12.85093 -12.56623 -12.26150 -11.82990 -11.78642 -11.56836 -10.99285 -10.85431 -10.62401 -10.53074 -10.38655 -10.27867 -10.15173 -10.05859 -10.04124 -9.93996 -9.80632 -9.56321 -9.13376 -8.69226 -8.47231 -6.87842 -5.69531 -3.11363 0.08184 0.48364 1.52883 2.23997 2.30680 2.75232 2.90171 3.37041 3.42654 3.45089 3.52999 3.90611 4.19395 4.25788 4.45230 4.49777 4.55851 4.64981 4.67540 4.84557 5.03822 5.17075 5.26172 5.30104 5.33668 5.42716 5.48089 5.52643 5.60479 5.63762 5.70584 5.80771 5.98127 6.02560 6.06019 6.12570 6.26682 6.29455 6.48724 6.52905 6.64571 6.66666 6.83722 7.31563 7.39460 7.46735 7.59072 7.81528 7.98275 8.32169 9.18018 9.78937 10.43218 11.34527 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.001845 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.701731 B =15176.025067 C =15708.538780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.714 5.714 16 C 0.554 3.446 17 O -0.529 6.529 18 C -0.078 4.078 19 C -0.139 4.139 20 C 0.110 3.890 21 N -0.456 5.456 22 C 0.197 3.803 23 C 0.015 3.985 24 C -0.150 4.150 25 C -0.221 4.221 26 C -0.021 4.021 27 O -0.167 6.167 28 C -0.098 4.098 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.013 0.987 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.209 0.791 43 H 0.153 0.847 44 H 0.024 0.976 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -25.670 -1.012 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.365 5.365 16 C 0.340 3.660 17 O -0.406 6.406 18 C -0.089 4.089 19 C -0.160 4.160 20 C -0.048 4.048 21 N -0.167 5.167 22 C 0.061 3.939 23 C -0.035 4.035 24 C -0.170 4.170 25 C -0.240 4.240 26 C -0.090 4.090 27 O -0.062 6.062 28 C -0.118 4.118 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.164 0.836 39 H 0.189 0.811 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.225 0.775 43 H 0.170 0.830 44 H 0.042 0.958 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.560 -25.982 -0.430 27.688 hybrid contribution 0.186 1.340 -0.231 1.373 sum 9.745 -24.641 -0.661 26.507 Atomic orbital electron populations 1.69805 1.04885 1.24709 1.57633 1.24798 0.95751 0.97768 1.02397 0.85997 0.78645 0.83569 0.77273 1.20536 1.21741 1.21701 1.19118 0.90525 0.82460 1.43042 0.90472 1.44516 1.01981 0.99696 1.86851 1.21949 0.84660 0.92472 0.98242 1.23013 0.95465 0.98581 1.00381 1.22458 0.98483 0.93901 0.98616 0.90481 1.21565 0.89913 0.91008 0.96683 1.45997 1.41488 1.25817 1.23174 1.18083 0.81803 0.80977 0.85164 1.90794 1.58765 1.70866 1.20198 1.20375 0.97376 0.95992 0.95119 1.22511 0.97446 1.01120 0.94881 1.22693 0.93319 0.89208 0.99539 1.67320 1.25930 1.16016 1.07452 1.18157 0.93445 0.91573 0.90729 1.19640 1.00835 0.96860 0.86210 1.21914 0.99017 0.94596 1.01481 1.21873 1.04194 1.02563 0.95336 1.24272 0.94981 0.88239 1.01482 1.84052 1.53960 1.35535 1.32649 1.22254 0.95083 0.93223 1.01273 1.21335 0.93408 0.86036 0.97729 0.93744 0.96939 0.87491 0.92045 0.91768 0.90805 0.91203 0.76267 0.83603 0.81111 0.82428 0.82877 0.77470 0.82953 0.95789 0.96407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -15.05 3.40 -170.04 -0.58 -15.63 16 10 C 0.15 3.56 5.89 -2.50 -0.01 3.55 16 11 C -0.14 -2.41 6.53 -24.58 -0.16 -2.57 16 12 C -0.12 -1.81 2.95 -88.79 -0.26 -2.07 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 14 C 0.13 1.83 5.02 -4.04 -0.02 1.81 16 15 N -0.71 -8.60 5.43 -61.15 -0.33 -8.93 16 16 C 0.55 7.42 7.80 -12.19 -0.10 7.32 16 17 O -0.53 -8.92 16.44 5.36 0.09 -8.84 16 18 C -0.08 -0.87 5.90 -104.69 -0.62 -1.49 16 19 C -0.14 -1.17 9.61 -38.94 -0.37 -1.54 16 20 C 0.11 0.90 11.16 -17.63 -0.20 0.70 16 21 N -0.46 -4.75 10.02 -9.91 -0.10 -4.85 16 22 C 0.20 2.21 6.75 -83.07 -0.56 1.65 16 23 C 0.01 0.16 7.03 -36.53 -0.26 -0.10 16 24 C -0.15 -1.39 10.58 -39.39 -0.42 -1.81 16 25 C -0.22 -1.61 10.89 -39.82 -0.43 -2.04 16 26 C -0.02 -0.15 12.08 29.52 0.36 0.21 16 27 O -0.17 -1.71 10.39 4.78 0.05 -1.66 16 28 C -0.10 -1.14 9.32 -38.61 -0.36 -1.50 16 29 C 0.14 2.75 6.76 -3.07 -0.02 2.73 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 3.88 6.60 -40.82 -0.27 3.61 16 38 H 0.15 0.85 6.52 -52.49 -0.34 0.50 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.21 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.15 1.83 7.58 -52.49 -0.40 1.43 16 44 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -33.93 380.02 -9.19 -43.12 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.90 Total: 2.03 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.68 Total: -1.85 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.45 Total: -55.36 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.14 Total: -10.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.93 -9.19 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028618716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.321 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds