Wall clock time and date at job start Sat Apr 11 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47044 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.46937 * 29.99888 * 3 2 1 6 6 H 1.48498 * 109.47150 * 149.99689 * 3 2 1 7 7 C 1.38815 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00302 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99478 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.65234 * 359.97362 * 9 7 2 11 11 C 1.54906 * 104.83327 * 155.90380 * 10 9 7 12 12 C 1.55153 * 101.58325 * 37.01098 * 11 10 9 13 13 H 1.09002 * 110.71895 * 83.03925 * 12 11 10 14 14 C 1.52999 * 110.72488 * 206.13524 * 12 11 10 15 15 N 1.46500 * 109.47566 * 182.55997 * 14 12 11 16 16 C 1.34773 * 119.99947 * 179.97438 * 15 14 12 17 17 O 1.21508 * 120.00343 * 359.97438 * 16 15 14 18 18 C 1.48153 * 119.99816 * 180.02562 * 16 15 14 19 19 C 1.40035 * 120.86408 * 0.02562 * 18 16 15 20 20 C 1.38141 * 119.26948 * 179.97438 * 19 18 16 21 21 N 1.31724 * 121.06067 * 0.02562 * 20 19 18 22 22 C 1.32812 * 121.90139 * 0.02562 * 21 20 19 23 23 C 1.47658 * 119.69452 * 179.97438 * 22 21 20 24 24 C 1.36032 * 125.94000 * 359.72383 * 23 22 21 25 25 C 1.40830 * 106.73783 * 179.84736 * 24 23 22 26 26 C 1.34807 * 107.04451 * 0.40800 * 25 24 23 27 27 O 1.34237 * 108.68341 * 359.74631 * 26 25 24 28 28 C 1.39470 * 120.86509 * 179.97438 * 18 16 15 29 29 C 1.47323 * 125.61671 * 180.19358 * 9 7 2 30 30 H 0.97001 * 120.00038 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.36409 * 37.06483 * 10 9 7 32 32 H 1.09000 * 110.45934 * 274.79542 * 10 9 7 33 33 H 1.09001 * 111.00608 * 278.93839 * 11 10 9 34 34 H 1.08997 * 111.03427 * 155.09995 * 11 10 9 35 35 H 1.08994 * 109.47091 * 62.55275 * 14 12 11 36 36 H 1.09008 * 109.46969 * 302.55957 * 14 12 11 37 37 H 0.97006 * 119.99737 * 359.97438 * 15 14 12 38 38 H 1.08007 * 120.36594 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.47220 * 180.30843 * 20 19 18 40 40 H 1.07999 * 126.62966 * 359.95135 * 24 23 22 41 41 H 1.07995 * 126.47830 * 180.11048 * 25 24 23 42 42 H 1.07995 * 125.66274 * 179.72526 * 26 25 24 43 43 H 1.08000 * 120.55405 * 0.04870 * 28 18 16 44 44 H 1.09001 * 110.06133 * 61.68126 * 29 9 7 45 45 H 1.09001 * 109.84785 * 300.42519 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4015 -3.9326 -0.6108 12 6 0.7785 -4.7524 -0.0254 13 1 0.5446 -5.1003 0.9808 14 6 1.1234 -5.9317 -0.9372 15 7 2.1978 -6.7208 -0.3297 16 6 2.6680 -7.8160 -0.9590 17 8 2.2005 -8.1491 -2.0299 18 6 3.7542 -8.6144 -0.3444 19 6 4.3050 -8.2479 0.8899 20 6 5.3163 -9.0164 1.4330 21 7 5.7683 -10.0846 0.8086 22 6 5.2789 -10.4719 -0.3637 23 6 5.8224 -11.6772 -1.0211 24 6 6.8182 -12.4689 -0.5394 25 6 7.0101 -13.4977 -1.4818 26 6 6.1378 -13.2810 -2.4865 27 8 5.4222 -12.1808 -2.2048 28 6 4.2540 -9.7511 -0.9794 29 6 1.9338 -3.7299 0.0051 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5993 -1.7591 -0.6154 32 1 -0.5290 -2.4858 1.0182 33 1 -0.3518 -3.8988 -1.6992 34 1 -1.3589 -4.3332 -0.2777 35 1 1.4511 -5.5574 -1.9069 36 1 0.2417 -6.5590 -1.0690 37 1 2.5708 -6.4551 0.5254 38 1 3.9426 -7.3745 1.4118 39 1 5.7400 -8.7397 2.3871 40 1 7.3563 -12.3354 0.3874 41 1 7.7247 -14.3047 -1.4148 42 1 6.0324 -13.8911 -3.3713 43 1 3.8561 -10.0672 -1.9324 44 1 2.5276 -3.8682 0.9087 45 1 2.5624 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028618717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:30 Heat of formation + Delta-G solvation = 46.312495 kcal Electronic energy + Delta-G solvation = -27802.667970 eV Core-core repulsion = 23787.763886 eV Total energy + Delta-G solvation = -4014.904084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91440 -40.82839 -39.32242 -37.68128 -34.88401 -33.74713 -33.08637 -32.55800 -32.38521 -29.87844 -29.00874 -28.34592 -25.99530 -24.91897 -24.16811 -23.31178 -21.95255 -21.62964 -20.66713 -20.03558 -19.78260 -18.66628 -17.48002 -16.90578 -16.81017 -16.47050 -16.11443 -15.82036 -15.66464 -15.37101 -14.88552 -14.64100 -14.42732 -14.10659 -13.92804 -13.66245 -13.27161 -13.17806 -12.91539 -12.84940 -12.56876 -12.25757 -11.82438 -11.77143 -11.55922 -10.99542 -10.83324 -10.63152 -10.52887 -10.38929 -10.27641 -10.16369 -10.07324 -10.03856 -9.93491 -9.80141 -9.56322 -9.13144 -8.68763 -8.46994 -6.87949 -5.69181 -3.11036 0.08524 0.48644 1.53097 2.24218 2.30918 2.75541 2.90438 3.37575 3.42551 3.44407 3.53326 3.90895 4.19731 4.26065 4.45386 4.50138 4.56135 4.65196 4.67818 4.84796 5.03965 5.17698 5.26390 5.30424 5.33871 5.42957 5.48132 5.52901 5.60531 5.63318 5.70807 5.80736 5.98180 6.02714 6.06291 6.12848 6.26770 6.29596 6.48156 6.52920 6.64499 6.66827 6.83494 7.31872 7.39784 7.46825 7.58446 7.81619 7.98548 8.32370 9.18189 9.78900 10.43389 11.34758 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.001860 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.324971 B =15047.923239 C =15619.908200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.713 5.713 16 C 0.554 3.446 17 O -0.529 6.529 18 C -0.078 4.078 19 C -0.139 4.139 20 C 0.110 3.890 21 N -0.456 5.456 22 C 0.197 3.803 23 C 0.015 3.985 24 C -0.150 4.150 25 C -0.221 4.221 26 C -0.021 4.021 27 O -0.167 6.167 28 C -0.098 4.098 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.209 0.791 43 H 0.153 0.847 44 H 0.018 0.982 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -25.357 0.804 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.365 5.365 16 C 0.340 3.660 17 O -0.406 6.406 18 C -0.089 4.089 19 C -0.160 4.160 20 C -0.048 4.048 21 N -0.167 5.167 22 C 0.061 3.939 23 C -0.035 4.035 24 C -0.170 4.170 25 C -0.240 4.240 26 C -0.090 4.090 27 O -0.062 6.062 28 C -0.118 4.118 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.164 0.836 39 H 0.189 0.811 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.225 0.775 43 H 0.170 0.830 44 H 0.036 0.964 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.887 -25.667 0.231 27.506 hybrid contribution 0.191 1.331 0.230 1.364 sum 10.078 -24.336 0.461 26.344 Atomic orbital electron populations 1.69790 1.04888 1.24818 1.57538 1.24795 0.95748 0.97759 1.02387 0.86070 0.78503 0.83291 0.77609 1.21565 1.21625 1.20752 1.19070 0.90494 0.82472 1.43181 0.90532 1.44568 1.01937 0.99651 1.86875 1.21933 0.84645 0.92489 0.98239 1.23008 0.95448 0.98577 1.00377 1.22461 0.98476 0.93920 0.98615 0.90484 1.21562 0.88915 0.91629 0.97071 1.45991 1.38856 1.26919 1.24700 1.18081 0.82211 0.80865 0.84863 1.90793 1.59123 1.69581 1.21140 1.20375 0.97109 0.96077 0.95305 1.22512 0.97235 1.01081 0.95123 1.22694 0.93280 0.89428 0.99357 1.67317 1.27054 1.15203 1.07143 1.18151 0.93075 0.91715 0.90965 1.19643 0.99866 0.97052 0.86978 1.21912 0.98575 0.94909 1.01611 1.21870 1.03795 1.02488 0.95810 1.24272 0.94456 0.88743 1.01505 1.84057 1.52713 1.36044 1.33392 1.22254 0.95039 0.93444 1.01096 1.21395 0.93424 0.86053 0.97726 0.93694 0.87485 0.96973 0.91770 0.92039 0.90818 0.91228 0.76255 0.83599 0.81109 0.82429 0.82879 0.77475 0.82953 0.96371 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.04 3.40 -169.83 -0.58 -15.61 16 10 C 0.15 3.56 5.89 -2.53 -0.01 3.55 16 11 C -0.13 -2.40 6.54 -24.59 -0.16 -2.56 16 12 C -0.12 -1.81 2.98 -88.79 -0.26 -2.07 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.83 5.00 -4.04 -0.02 1.81 16 15 N -0.71 -8.63 5.39 -61.15 -0.33 -8.96 16 16 C 0.55 7.44 7.80 -12.19 -0.10 7.34 16 17 O -0.53 -8.94 16.44 5.36 0.09 -8.85 16 18 C -0.08 -0.87 5.90 -104.69 -0.62 -1.49 16 19 C -0.14 -1.18 9.61 -38.94 -0.37 -1.55 16 20 C 0.11 0.90 11.16 -17.63 -0.20 0.70 16 21 N -0.46 -4.77 10.02 -9.92 -0.10 -4.87 16 22 C 0.20 2.22 6.74 -83.08 -0.56 1.66 16 23 C 0.01 0.16 7.03 -36.53 -0.26 -0.10 16 24 C -0.15 -1.39 10.58 -39.39 -0.42 -1.81 16 25 C -0.22 -1.61 10.89 -39.82 -0.43 -2.05 16 26 C -0.02 -0.15 12.08 29.52 0.36 0.21 16 27 O -0.17 -1.71 10.39 4.72 0.05 -1.66 16 28 C -0.10 -1.14 9.32 -38.61 -0.36 -1.50 16 29 C 0.14 2.72 6.66 -2.90 -0.02 2.70 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 36 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.40 3.92 6.54 -40.82 -0.27 3.65 16 38 H 0.15 0.86 6.53 -52.48 -0.34 0.52 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.15 1.83 7.58 -52.49 -0.40 1.43 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -33.88 379.91 -9.19 -43.07 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.90 Total: 2.16 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.69 Total: -1.86 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.45 Total: -55.39 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.14 Total: -10.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.88 -9.19 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028618717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.384 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds