Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21551 * 120.00532 * 0.02562 * 16 15 14 18 18 C 1.47874 * 119.99389 * 179.97438 * 16 15 14 19 19 C 1.39681 * 120.07837 * 359.73243 * 18 16 15 20 20 C 1.38048 * 120.14776 * 179.71345 * 19 18 16 21 21 C 1.38100 * 120.29830 * 0.56401 * 20 19 18 22 22 C 1.39645 * 120.14695 * 359.71181 * 21 20 19 23 23 C 1.47847 * 120.07170 * 179.97438 * 22 21 20 24 24 C 1.35767 * 126.58475 * 359.73411 * 23 22 21 25 25 N 1.34148 * 107.51432 * 179.89679 * 24 23 22 26 26 C 1.30352 * 108.90175 * 0.37523 * 25 24 23 27 27 O 1.34001 * 109.03631 * 359.76612 * 26 25 24 28 28 C 1.39314 * 120.06862 * 180.02562 * 18 16 15 29 29 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 30 30 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 31 31 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 32 32 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 33 33 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 34 34 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 35 35 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 36 36 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 37 37 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 38 38 H 1.08006 * 119.92309 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.85317 * 180.27627 * 20 19 18 40 40 H 1.07999 * 119.92341 * 179.69506 * 21 20 19 41 41 H 1.07993 * 126.24051 * 0.02562 * 24 23 22 42 42 H 1.07999 * 125.48302 * 179.77078 * 26 25 24 43 43 H 1.08000 * 120.15421 * 0.03316 * 28 18 16 44 44 H 1.08998 * 109.88206 * 59.48273 * 29 9 7 45 45 H 1.09007 * 109.88177 * 298.32145 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1756 -8.1699 2.0144 18 6 3.6588 -8.6876 0.2842 19 6 4.1618 -8.3340 -0.9700 20 6 5.1391 -9.1045 -1.5674 21 6 5.6178 -10.2354 -0.9357 22 6 5.1197 -10.6036 0.3158 23 6 5.6330 -11.8150 0.9903 24 6 6.5788 -12.6658 0.5163 25 7 6.7533 -13.6278 1.4348 26 6 5.9521 -13.4038 2.4383 27 8 5.2465 -12.2911 2.1943 28 6 4.1369 -9.8274 0.9269 29 6 1.9319 -3.7274 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5290 -2.4860 -1.0162 32 1 -0.5991 -1.7588 0.6182 33 1 -1.3585 -4.3328 0.2810 34 1 -0.3505 -3.8984 1.7017 35 1 1.4902 -5.5610 1.8930 36 1 0.2283 -6.5362 1.1025 37 1 2.5066 -6.5062 -0.5666 38 1 3.7882 -7.4535 -1.4716 39 1 5.5278 -8.8242 -2.5353 40 1 6.3790 -10.8365 -1.4108 41 1 7.0977 -12.5820 -0.4271 42 1 5.8703 -14.0164 3.3240 43 1 3.7477 -10.1083 1.8944 44 1 2.5596 -3.8509 0.8809 45 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028904023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = 41.724850 kcal Electronic energy + Delta-G solvation = -27781.514440 eV Core-core repulsion = 23766.411420 eV Total energy + Delta-G solvation = -4015.103019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70238 -40.41786 -38.74919 -37.60853 -35.20598 -34.81982 -33.25809 -32.43607 -31.59648 -29.90089 -29.09541 -28.19992 -25.77161 -24.61204 -24.09884 -23.35615 -22.43090 -21.82260 -20.68875 -20.00716 -19.74666 -18.65201 -17.55462 -16.99623 -16.90191 -16.52962 -16.25576 -15.78101 -15.48812 -15.08522 -14.80535 -14.55081 -14.46677 -14.24377 -13.85079 -13.66338 -13.52736 -13.32792 -12.73985 -12.54541 -12.24213 -11.84283 -11.83430 -11.75877 -11.73751 -11.53457 -11.05511 -10.98715 -10.81215 -10.48839 -10.40032 -10.20842 -10.09686 -10.00697 -9.80386 -9.54660 -9.48220 -9.03702 -8.67333 -8.58399 -6.86498 -5.67957 -3.09836 0.09734 0.59435 1.44031 2.21909 2.25444 2.71760 3.04720 3.38603 3.42876 3.44203 3.52500 3.77319 4.11638 4.34651 4.41836 4.46455 4.53215 4.65452 4.68308 4.89377 5.00784 5.13934 5.20430 5.25865 5.35415 5.40169 5.49380 5.49897 5.66119 5.81973 5.83373 5.85806 5.86967 5.90245 6.02786 6.06864 6.27339 6.31145 6.36808 6.50950 6.55077 6.67502 6.86320 7.22245 7.42388 7.48125 7.59486 7.82929 8.10337 8.33685 9.19369 9.80342 10.44924 11.35934 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.001837 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.973627 B =15235.714881 C =15754.674901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.554 3.446 17 O -0.537 6.537 18 C -0.125 4.125 19 C -0.074 4.074 20 C -0.119 4.119 21 C -0.073 4.073 22 C -0.028 4.028 23 C 0.003 3.997 24 C -0.024 4.024 25 N -0.487 5.487 26 C 0.175 3.825 27 O -0.196 6.196 28 C -0.040 4.040 29 C 0.141 3.859 30 H 0.253 0.747 31 H 0.012 0.988 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.187 0.813 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.024 0.976 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -24.887 -1.916 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.369 5.369 16 C 0.341 3.659 17 O -0.416 6.416 18 C -0.128 4.128 19 C -0.093 4.093 20 C -0.137 4.137 21 C -0.091 4.091 22 C -0.029 4.029 23 C -0.051 4.051 24 C -0.164 4.164 25 N -0.215 5.215 26 C -0.050 4.050 27 O -0.082 6.082 28 C -0.059 4.059 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.160 0.840 44 H 0.042 0.958 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.451 -25.334 -1.116 27.062 hybrid contribution 0.270 1.415 -0.422 1.501 sum 9.721 -23.919 -1.538 25.865 Atomic orbital electron populations 1.69785 1.04878 1.24924 1.57486 1.24795 0.95749 0.97749 1.02386 0.86146 0.78403 0.83011 0.77886 1.21229 1.21540 1.21151 1.19024 0.90458 0.82495 1.43269 0.90598 1.44501 1.01975 0.99686 1.86870 1.21947 0.84654 0.92483 0.98215 1.23011 0.95487 0.98587 1.00369 1.22452 0.98421 0.93948 0.98609 0.90546 1.21526 0.89997 0.90992 0.96618 1.46010 1.41616 1.26055 1.23179 1.18172 0.81801 0.80842 0.85101 1.90785 1.59199 1.71106 1.20469 1.19953 0.99594 0.97286 0.96010 1.21553 0.95161 0.99005 0.93582 1.21033 0.97232 0.94687 1.00718 1.21222 0.98610 0.96604 0.92683 1.17507 0.98698 0.92055 0.94638 1.21394 1.00142 0.97955 0.85573 1.23308 0.99792 0.92143 1.01121 1.70368 1.22884 1.26123 1.02129 1.28195 0.89641 0.86593 1.00563 1.84521 1.54245 1.36454 1.32956 1.21374 0.93069 0.91873 0.99619 1.21331 0.93428 0.86018 0.97702 0.93653 0.96972 0.87510 0.92078 0.91788 0.90950 0.91354 0.76382 0.84771 0.84251 0.84769 0.79591 0.73175 0.83983 0.95789 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -15.15 3.40 -170.04 -0.58 -15.73 16 10 C 0.15 3.59 5.89 -2.50 -0.01 3.58 16 11 C -0.14 -2.44 6.53 -24.58 -0.16 -2.60 16 12 C -0.11 -1.83 2.95 -88.79 -0.26 -2.10 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.13 1.88 5.02 -4.04 -0.02 1.86 16 15 N -0.72 -8.89 5.42 -61.24 -0.33 -9.22 16 16 C 0.55 7.54 7.77 -12.32 -0.10 7.45 16 17 O -0.54 -9.24 16.34 5.32 0.09 -9.15 16 18 C -0.13 -1.36 5.87 -105.01 -0.62 -1.98 16 19 C -0.07 -0.60 9.54 -39.11 -0.37 -0.97 16 20 C -0.12 -0.76 10.02 -39.70 -0.40 -1.16 16 21 C -0.07 -0.49 9.57 -39.11 -0.37 -0.86 16 22 C -0.03 -0.26 5.87 -105.03 -0.62 -0.87 16 23 C 0.00 0.02 7.07 -36.54 -0.26 -0.23 16 24 C -0.02 -0.20 11.29 -17.42 -0.20 -0.40 16 25 N -0.49 -4.50 11.27 -14.68 -0.17 -4.67 16 26 C 0.18 1.25 13.22 52.13 0.69 1.94 16 27 O -0.20 -1.84 10.58 4.23 0.04 -1.80 16 28 C -0.04 -0.44 9.27 -38.77 -0.36 -0.80 16 29 C 0.14 2.79 6.76 -3.07 -0.02 2.77 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.03 6.49 -40.82 -0.27 3.76 16 38 H 0.13 0.84 6.39 -52.48 -0.34 0.50 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.53 7.02 -52.49 -0.37 0.16 16 41 H 0.19 1.00 7.29 -52.49 -0.38 0.62 16 42 H 0.25 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 1.69 7.53 -52.49 -0.40 1.29 16 44 H 0.02 0.49 7.70 -51.93 -0.40 0.09 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -34.98 377.63 -8.83 -43.81 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.79 Total: 1.38 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.33 Total: -1.13 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.52 Total: -55.65 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.13 Total: -10.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -8.83 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028904023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.534 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds