Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48494 * 109.46924 * 264.66596 * 3 2 1 5 5 H 1.48495 * 109.47244 * 24.67225 * 3 2 1 6 6 H 1.48498 * 109.46763 * 144.67060 * 3 2 1 7 7 C 1.38815 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99955 * 336.24522 * 7 2 1 9 9 N 1.36937 * 120.00276 * 156.24265 * 7 2 1 10 10 C 1.47414 * 125.65168 * 162.05254 * 9 7 2 11 11 C 1.54904 * 104.83475 * 155.90466 * 10 9 7 12 12 C 1.55160 * 101.58241 * 37.01229 * 11 10 9 13 13 H 1.08996 * 110.71851 * 83.03462 * 12 11 10 14 14 C 1.52994 * 110.72096 * 206.13458 * 12 11 10 15 15 N 1.46506 * 109.46863 * 182.55979 * 14 12 11 16 16 C 1.34781 * 119.99821 * 180.02562 * 15 14 12 17 17 O 1.21548 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.47861 * 119.99915 * 179.97438 * 16 15 14 19 19 C 1.39686 * 120.07438 * 359.72258 * 18 16 15 20 20 C 1.38056 * 120.14439 * 179.78694 * 19 18 16 21 21 C 1.38089 * 120.30323 * 0.46884 * 20 19 18 22 22 C 1.39648 * 120.14848 * 359.78548 * 21 20 19 23 23 C 1.47844 * 120.07910 * 180.02562 * 22 21 20 24 24 C 1.35763 * 126.58104 * 359.97438 * 23 22 21 25 25 N 1.34144 * 107.51768 * 179.97438 * 24 23 22 26 26 C 1.30359 * 108.89866 * 0.02562 * 25 24 23 27 27 O 1.33994 * 109.03419 * 359.72705 * 26 25 24 28 28 C 1.39306 * 120.07685 * 179.97438 * 18 16 15 29 29 C 1.47320 * 125.61359 * 342.27873 * 9 7 2 30 30 H 0.97001 * 119.99655 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.36539 * 37.06990 * 10 9 7 32 32 H 1.08998 * 110.46592 * 274.79372 * 10 9 7 33 33 H 1.08999 * 111.00997 * 278.93700 * 11 10 9 34 34 H 1.09000 * 111.03854 * 155.09728 * 11 10 9 35 35 H 1.08997 * 109.47186 * 62.56259 * 14 12 11 36 36 H 1.08993 * 109.47384 * 302.55236 * 14 12 11 37 37 H 0.96993 * 119.99807 * 359.97438 * 15 14 12 38 38 H 1.08005 * 119.92878 * 0.02562 * 19 18 16 39 39 H 1.08002 * 119.84503 * 180.25328 * 20 19 18 40 40 H 1.08009 * 119.92918 * 179.76425 * 21 20 19 41 41 H 1.08005 * 126.24144 * 0.02562 * 24 23 22 42 42 H 1.08001 * 125.47691 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.14976 * 0.02562 * 28 18 16 44 44 H 1.08995 * 110.06787 * 61.67862 * 29 9 7 45 45 H 1.09011 * 109.84795 * 300.42123 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6826 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0103 -1.2022 0.0005 8 1 1.5389 -2.0976 0.3777 9 7 3.2926 -1.2527 -0.4772 10 6 4.2678 -2.3252 -0.2091 11 6 5.2608 -2.2642 -1.3964 12 6 5.3571 -0.7354 -1.6437 13 1 6.0753 -0.2791 -0.9626 14 6 5.7332 -0.4450 -3.0980 15 7 5.8763 1.0009 -3.2860 16 6 6.2056 1.4937 -4.4964 17 8 6.3844 0.7385 -5.4319 18 6 6.3494 2.9530 -4.6863 19 6 6.1386 3.8226 -3.6137 20 6 6.2768 5.1851 -3.7882 21 6 6.6144 5.6984 -5.0249 22 6 6.8229 4.8408 -6.1071 23 6 7.1849 5.3920 -7.4304 24 6 7.3490 6.7028 -7.7434 25 7 7.6737 6.7699 -9.0433 26 6 7.7131 5.5618 -9.5315 27 8 7.4213 4.6876 -8.5588 28 6 6.6903 3.4641 -5.9366 29 6 3.9270 -0.2413 -1.3404 30 1 -0.4850 0.8401 0.0004 31 1 3.7684 -3.2937 -0.1816 32 1 4.7883 -2.1408 0.7307 33 1 4.8577 -2.7766 -2.2698 34 1 6.2304 -2.6765 -1.1171 35 1 4.9515 -0.8216 -3.7576 36 1 6.6765 -0.9371 -3.3346 37 1 5.7332 1.6034 -2.5395 38 1 5.8707 3.4280 -2.6446 39 1 6.1167 5.8528 -2.9545 40 1 6.7172 6.7656 -5.1556 41 1 7.2392 7.5390 -7.0688 42 1 7.9475 5.3065 -10.5544 43 1 6.8500 2.7965 -6.7704 44 1 3.9678 0.7180 -0.8247 45 1 3.3644 -0.1418 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028904024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 48.254119 kcal Electronic energy + Delta-G solvation = -28324.448292 eV Core-core repulsion = 24309.628404 eV Total energy + Delta-G solvation = -4014.819889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68360 -40.43163 -38.82211 -37.91689 -35.18627 -34.88745 -33.23508 -32.51947 -31.61677 -30.46881 -29.16070 -28.61394 -26.02840 -24.56986 -24.07667 -23.43830 -22.48208 -21.80424 -20.74568 -20.35714 -19.99960 -18.68572 -17.56529 -16.97956 -16.97385 -16.59713 -16.35002 -16.06006 -15.67843 -15.15738 -15.09340 -14.52083 -14.42514 -14.21359 -13.81684 -13.61742 -13.53234 -13.49923 -13.11186 -12.77201 -12.53283 -12.22633 -12.00228 -11.81358 -11.76177 -11.62281 -11.35942 -11.03645 -11.01613 -10.77028 -10.63176 -10.38003 -10.28657 -10.03098 -9.92342 -9.46879 -9.39947 -9.07908 -8.67751 -8.56185 -7.11612 -5.99322 -3.27682 0.11858 0.61227 1.46195 2.23723 2.27332 2.71720 3.01217 3.24955 3.37379 3.43336 3.53581 3.79132 4.13279 4.35138 4.44435 4.48990 4.55445 4.66313 4.68603 4.77939 4.91360 4.96818 5.01222 5.11549 5.19922 5.26938 5.39933 5.42299 5.51757 5.57318 5.74913 5.79892 5.84313 5.87809 5.89646 5.92798 5.98429 6.03053 6.22027 6.26241 6.33133 6.41258 6.54511 6.67964 6.74173 7.24197 7.37768 7.66385 8.07051 8.27088 8.79016 9.64477 10.13265 11.17323 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.002443 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.704686 B =11456.447370 C =12486.071587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.720 5.720 16 C 0.557 3.443 17 O -0.536 6.536 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.072 4.072 22 C -0.029 4.029 23 C 0.003 3.997 24 C -0.024 4.024 25 N -0.487 5.487 26 C 0.175 3.825 27 O -0.196 6.196 28 C -0.039 4.039 29 C 0.124 3.876 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.187 0.813 42 H 0.253 0.747 43 H 0.143 0.857 44 H 0.023 0.977 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.402 11.321 -12.176 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.371 5.371 16 C 0.344 3.656 17 O -0.414 6.414 18 C -0.129 4.129 19 C -0.093 4.093 20 C -0.136 4.136 21 C -0.090 4.090 22 C -0.029 4.029 23 C -0.050 4.050 24 C -0.164 4.164 25 N -0.215 5.215 26 C -0.050 4.050 27 O -0.082 6.082 28 C -0.058 4.058 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.161 0.839 44 H 0.040 0.960 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.388 11.307 -13.157 25.280 hybrid contribution 0.150 0.831 0.776 1.147 sum 18.538 12.138 -12.381 25.383 Atomic orbital electron populations 1.69860 1.05531 1.26571 1.52984 1.24973 0.95159 0.97395 1.00361 0.86887 0.78950 0.84941 0.77428 1.21334 1.23209 1.20692 1.18678 0.85223 0.95675 1.37364 0.88920 1.44852 1.10887 1.22207 1.55721 1.21613 0.90140 0.93109 0.94449 1.22730 0.99540 0.93694 1.00020 1.22472 0.98280 0.98204 0.94689 0.90118 1.21478 1.01845 0.79302 0.96517 1.45985 1.70362 1.09300 1.11486 1.18147 0.77048 0.87533 0.82906 1.90777 1.50584 1.59557 1.40516 1.19919 1.04898 0.93451 0.94667 1.21565 0.95709 0.93676 0.98386 1.21038 1.00116 0.95116 0.97350 1.21223 0.96645 0.99697 0.91421 1.17504 1.03999 0.93112 0.88306 1.21378 1.06419 0.90630 0.86575 1.23309 1.04521 0.95756 0.92765 1.70369 1.17773 1.24027 1.09302 1.28191 0.99471 0.81908 0.95461 1.84515 1.66149 1.39490 1.18026 1.21360 0.93664 0.93855 0.96949 1.21768 0.90738 0.92796 0.94787 0.92704 0.93104 0.95747 0.90829 0.91170 0.90660 0.91038 0.76384 0.84944 0.84208 0.84698 0.79584 0.73176 0.83929 0.95965 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 2 C 0.02 0.57 5.43 -17.43 -0.09 0.47 16 3 Si 0.89 21.95 24.39 -169.99 -4.15 17.81 16 4 H -0.29 -6.71 6.84 56.52 0.39 -6.32 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 7 C -0.24 -6.81 10.56 -15.06 -0.16 -6.96 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.61 -14.36 3.22 -169.84 -0.55 -14.91 16 10 C 0.13 2.47 7.23 -2.54 -0.02 2.45 16 11 C -0.12 -1.77 6.54 -24.58 -0.16 -1.93 16 12 C -0.12 -1.78 2.98 -88.79 -0.26 -2.04 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.85 5.00 -4.04 -0.02 1.83 16 15 N -0.72 -9.69 5.38 -61.25 -0.33 -10.02 16 16 C 0.56 8.04 7.77 -12.32 -0.10 7.95 16 17 O -0.54 -9.37 16.34 5.32 0.09 -9.28 16 18 C -0.13 -1.52 5.87 -105.02 -0.62 -2.14 16 19 C -0.07 -0.73 9.54 -39.11 -0.37 -1.10 16 20 C -0.12 -0.93 10.02 -39.70 -0.40 -1.32 16 21 C -0.07 -0.55 9.57 -39.11 -0.37 -0.93 16 22 C -0.03 -0.28 5.87 -105.03 -0.62 -0.90 16 23 C 0.00 0.03 7.07 -36.54 -0.26 -0.23 16 24 C -0.02 -0.21 11.29 -17.43 -0.20 -0.41 16 25 N -0.49 -4.73 11.27 -14.68 -0.17 -4.89 16 26 C 0.17 1.33 13.22 52.14 0.69 2.01 16 27 O -0.20 -1.94 10.58 4.26 0.05 -1.89 16 28 C -0.04 -0.46 9.27 -38.77 -0.36 -0.82 16 29 C 0.12 2.55 4.55 -2.90 -0.01 2.54 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 4.77 6.43 -40.82 -0.26 4.51 16 38 H 0.13 1.12 6.39 -52.48 -0.34 0.78 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.65 7.02 -52.48 -0.37 0.28 16 41 H 0.19 1.12 7.29 -52.48 -0.38 0.73 16 42 H 0.25 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.14 1.77 7.53 -52.48 -0.40 1.38 16 44 H 0.02 0.49 3.55 -51.93 -0.18 0.31 16 45 H 0.04 0.95 7.73 -51.92 -0.40 0.55 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -36.10 372.91 -7.70 -43.80 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.71 Total: 2.31 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.33 Total: -1.52 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.27 Total: -56.84 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.13 Total: -11.17 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.15 Total: 17.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.10 -7.70 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028904024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.051 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds