Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86801 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47128 * 269.99962 * 3 2 1 5 5 H 1.48503 * 109.47389 * 29.99834 * 3 2 1 6 6 H 1.48501 * 109.47117 * 149.99758 * 3 2 1 7 7 C 1.38652 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99913 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.35754 * 116.99699 * 185.05383 * 9 7 2 11 11 C 1.38874 * 120.06849 * 354.46508 * 10 9 7 12 12 C 1.38105 * 119.92801 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.06858 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.93374 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.46830 * 90.00041 * 14 13 12 16 16 C 1.47483 * 111.00201 * 265.97412 * 15 14 13 17 17 C 1.53515 * 87.92983 * 221.29808 * 16 15 14 18 18 N 1.46500 * 114.34435 * 272.36165 * 17 16 15 19 19 C 1.34783 * 120.00141 * 248.93122 * 18 17 16 20 20 O 1.21687 * 119.99870 * 359.97438 * 19 18 17 21 21 C 1.46673 * 119.99555 * 180.02562 * 19 18 17 22 22 C 1.37875 * 126.22761 * 179.68932 * 21 19 18 23 23 C 1.39835 * 107.08595 * 179.84471 * 22 21 19 24 24 C 1.35455 * 107.86073 * 0.41497 * 23 22 21 25 25 N 1.35532 * 108.87484 * 359.74246 * 24 23 22 26 26 H 0.96994 * 125.68085 * 180.02562 * 25 24 23 27 27 C 1.47487 * 110.99782 * 170.00295 * 15 14 13 28 28 C 1.38302 * 120.14069 * 0.29805 * 13 12 11 29 29 C 1.38110 * 120.06569 * 359.44805 * 28 13 12 30 30 H 0.96992 * 120.00291 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.03886 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96365 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.47062 * 330.00680 * 14 13 12 34 34 H 1.09002 * 109.47722 * 210.00332 * 14 13 12 35 35 H 1.08994 * 113.47361 * 336.06213 * 16 15 14 36 36 H 1.08998 * 113.47406 * 106.53404 * 16 15 14 37 37 H 1.09002 * 114.16706 * 139.67615 * 17 16 15 38 38 H 0.97003 * 120.00133 * 68.92493 * 18 17 16 39 39 H 1.07996 * 126.45878 * 359.97438 * 22 21 19 40 40 H 1.07996 * 126.07370 * 180.16241 * 23 22 21 41 41 H 1.08006 * 125.56057 * 179.72242 * 24 23 22 42 42 H 1.08997 * 113.47567 * 253.47123 * 27 15 14 43 43 H 1.08994 * 113.47757 * 23.93854 * 27 15 14 44 44 H 1.08006 * 119.97148 * 179.70095 * 28 13 12 45 45 H 1.07998 * 120.03040 * 180.27322 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9736 -2.4056 -0.1050 11 6 3.2236 -3.5743 -0.0920 12 6 3.8537 -4.7985 -0.1995 13 6 5.2299 -4.8613 -0.3206 14 6 5.9142 -6.1987 -0.4383 15 7 6.0181 -6.5725 -1.8552 16 6 4.8815 -7.4193 -2.2631 17 6 5.8768 -8.2749 -3.0595 18 7 6.1177 -7.8060 -4.4263 19 6 5.6757 -8.5289 -5.4745 20 8 5.0770 -9.5713 -5.2855 21 6 5.9174 -8.0596 -6.8430 22 6 5.5300 -8.6961 -8.0030 23 6 5.9597 -7.9017 -9.0706 24 6 6.5962 -6.8226 -8.5557 25 7 6.5774 -6.9066 -7.2031 26 1 6.9642 -6.2614 -6.5908 27 6 6.8866 -7.7519 -2.0283 28 6 5.9800 -3.6994 -0.3282 29 6 5.3554 -2.4718 -0.2263 30 1 -0.4850 0.8400 -0.0004 31 1 2.1489 -3.5259 0.0021 32 1 3.2710 -5.7078 -0.1899 33 1 5.3338 -6.9520 0.0945 34 1 6.9125 -6.1356 -0.0051 35 1 4.4175 -7.9524 -1.4334 36 1 4.1564 -6.9003 -2.8899 37 1 5.6917 -9.3474 -2.9988 38 1 6.5952 -6.9752 -4.5770 39 1 4.9938 -9.6308 -8.0738 40 1 5.8139 -8.1132 -10.1196 41 1 7.0456 -6.0255 -9.1294 42 1 7.8607 -7.5147 -2.4562 43 1 6.9576 -8.3737 -1.1360 44 1 7.0551 -3.7518 -0.4180 45 1 5.9414 -1.5647 -0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030098754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 55.367275 kcal Electronic energy + Delta-G solvation = -27837.176955 eV Core-core repulsion = 23822.665516 eV Total energy + Delta-G solvation = -4014.511439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60355 -40.69228 -39.21224 -38.67771 -36.75994 -34.31151 -32.48631 -31.57714 -31.12582 -30.28887 -29.58248 -27.69136 -26.21447 -25.42937 -23.94596 -22.96988 -22.09779 -21.04799 -20.54461 -20.35024 -19.96843 -19.18670 -17.91490 -17.31650 -16.64260 -16.22377 -15.79364 -15.40685 -15.23295 -15.11437 -14.60716 -14.35992 -14.02083 -13.97804 -13.88864 -13.77979 -13.75553 -13.21606 -12.99841 -12.87425 -12.67945 -12.58975 -12.44852 -12.22280 -11.92744 -11.65464 -11.30616 -11.02200 -10.81649 -10.68848 -10.65644 -10.39379 -10.18437 -9.43993 -9.40506 -9.33123 -9.04323 -8.88544 -8.55530 -8.29172 -7.35402 -6.44566 -4.11420 1.16479 2.09940 2.14217 2.44322 2.69448 2.80761 3.11254 3.19203 3.22884 3.37270 3.85803 4.16749 4.20667 4.44592 4.54084 4.67103 4.73915 4.82761 4.91137 5.01743 5.04041 5.07922 5.12416 5.18015 5.29830 5.34245 5.44100 5.60758 5.61340 5.66884 5.72106 5.75735 5.85884 6.05141 6.11381 6.17632 6.32778 6.37592 6.53147 6.59004 6.74007 6.83837 6.99528 7.02339 7.21192 7.22111 7.27417 7.57940 7.76820 7.87603 8.00758 8.90576 9.52759 10.63111 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.002229 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.368979 B =12560.594017 C =13888.290818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.221 4.221 12 C -0.064 4.064 13 C -0.167 4.167 14 C 0.076 3.924 15 N -0.463 5.463 16 C -0.012 4.012 17 C 0.118 3.882 18 N -0.704 5.704 19 C 0.593 3.407 20 O -0.530 6.530 21 C -0.058 4.058 22 C -0.105 4.105 23 C -0.214 4.214 24 C 0.025 3.975 25 N -0.539 5.539 26 H 0.417 0.583 27 C -0.013 4.013 28 C -0.059 4.059 29 C -0.194 4.194 30 H 0.280 0.720 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.401 0.599 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.559 -15.656 -11.217 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.122 6.122 10 C 0.108 3.892 11 C -0.240 4.240 12 C -0.083 4.083 13 C -0.168 4.168 14 C -0.052 4.052 15 N -0.185 5.185 16 C -0.143 4.143 17 C 0.011 3.989 18 N -0.354 5.354 19 C 0.381 3.619 20 O -0.406 6.406 21 C -0.171 4.171 22 C -0.132 4.132 23 C -0.238 4.238 24 C -0.111 4.111 25 N -0.135 5.135 26 H 0.255 0.745 27 C -0.143 4.143 28 C -0.077 4.077 29 C -0.213 4.213 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.236 0.764 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.189 0.811 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.198 -15.312 -11.204 24.947 hybrid contribution 0.252 0.907 0.741 1.198 sum 16.450 -14.405 -10.463 24.240 Atomic orbital electron populations 1.69644 1.05573 1.28525 1.47968 1.24472 0.95029 0.98841 0.95668 0.86178 0.80314 0.81428 0.78960 1.19882 1.20751 1.18382 1.20764 0.76885 0.96628 1.52270 0.87659 1.83573 1.22621 1.25781 1.80275 1.19132 0.91723 0.85478 0.92831 1.21242 1.01069 0.91848 1.09823 1.20614 0.93478 0.96585 0.97617 1.19025 0.93350 0.93470 1.10945 1.21407 0.99993 0.95041 0.88741 1.69072 1.05244 1.24265 1.19933 1.24405 0.95832 0.94626 0.99390 1.21972 0.96658 0.99394 0.80849 1.45375 1.58938 1.26131 1.04931 1.17075 0.78490 0.83634 0.82723 1.90842 1.41306 1.23366 1.85106 1.20386 1.10271 0.92237 0.94213 1.21349 1.01505 1.00326 0.90019 1.20931 1.06673 0.96754 0.99453 1.22090 1.04768 1.01693 0.82560 1.42064 1.44260 1.19505 1.07685 0.74519 1.24243 0.98648 0.93069 0.98294 1.20429 0.98240 0.91189 0.97883 1.20196 0.91934 0.97844 1.11340 0.91019 0.85040 0.87751 0.93396 0.90770 0.90167 0.89261 0.86987 0.76434 0.83468 0.83840 0.81103 0.89423 0.89991 0.87116 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 13.96 55.48 0.77 -24.62 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.59 28.62 -169.99 -4.86 16.73 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.97 9.95 30.89 0.31 -10.67 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.75 16 9 O -0.22 -5.72 8.59 0.03 0.00 -5.72 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.22 -4.72 9.17 -39.39 -0.36 -5.08 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 13 C -0.17 -2.62 5.47 -104.58 -0.57 -3.20 16 14 C 0.08 0.89 4.94 -4.98 -0.02 0.87 16 15 N -0.46 -5.00 6.32 -246.07 -1.55 -6.55 16 16 C -0.01 -0.13 7.53 -7.53 -0.06 -0.19 16 17 C 0.12 1.08 4.59 -67.72 -0.31 0.77 16 18 N -0.70 -6.46 5.39 -54.85 -0.30 -6.75 16 19 C 0.59 6.79 7.79 -12.85 -0.10 6.69 16 20 O -0.53 -7.85 16.47 5.20 0.09 -7.77 16 21 C -0.06 -0.59 7.06 -81.98 -0.58 -1.16 16 22 C -0.11 -1.06 10.65 -39.12 -0.42 -1.47 16 23 C -0.21 -1.70 10.81 -39.98 -0.43 -2.13 16 24 C 0.03 0.16 11.89 -16.91 -0.20 -0.04 16 25 N -0.54 -3.80 5.99 -9.39 -0.06 -3.85 16 26 H 0.42 1.89 8.19 -40.82 -0.33 1.55 16 27 C -0.01 -0.10 7.45 -7.53 -0.06 -0.16 16 28 C -0.06 -0.96 9.69 -39.60 -0.38 -1.35 16 29 C -0.19 -3.77 9.99 -39.39 -0.39 -4.17 16 30 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 32 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.05 0.52 7.24 -51.93 -0.38 0.15 16 34 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 35 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.08 7.45 -51.93 -0.39 0.70 16 38 H 0.40 2.98 7.89 -40.82 -0.32 2.66 16 39 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.17 0.56 8.06 -52.48 -0.42 0.13 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 44 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -33.20 383.60 -10.18 -43.38 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.73 Total: 7.07 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -4.32 Total: -17.69 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -1.13 Total: -41.78 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.20 -10.18 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030098754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.747 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds