Wall clock time and date at job start Sat Apr 11 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48497 * 109.47134 * 269.99645 * 3 2 1 5 5 H 1.48498 * 109.47261 * 30.00214 * 3 2 1 6 6 H 1.48500 * 109.46862 * 149.99908 * 3 2 1 7 7 C 1.38654 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99787 * 0.02562 * 7 2 1 9 9 O 1.34821 * 119.99952 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00064 * 185.05779 * 9 7 2 11 11 C 1.38873 * 120.06895 * 354.46312 * 10 9 7 12 12 C 1.38095 * 119.93163 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07229 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.93702 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.46848 * 89.99606 * 14 13 12 16 16 C 1.47961 * 110.99355 * 170.00197 * 15 14 13 17 17 C 1.53936 * 86.18103 * 222.41598 * 16 15 14 18 18 N 1.46495 * 113.73054 * 138.07924 * 17 16 15 19 19 C 1.34776 * 119.99842 * 155.00758 * 18 17 16 20 20 O 1.21624 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.47270 * 120.00098 * 180.02562 * 19 18 17 22 22 C 1.46684 * 126.94082 * 0.32763 * 21 19 18 23 23 C 1.34487 * 106.33009 * 180.11753 * 22 21 19 24 24 N 1.36447 * 108.85944 * 359.60322 * 23 22 21 25 25 H 0.96996 * 124.85184 * 180.26229 * 24 23 22 26 26 C 1.34666 * 110.29380 * 0.26445 * 24 23 22 27 27 C 1.47960 * 110.99817 * 70.64851 * 15 14 13 28 28 C 1.38303 * 120.13807 * 0.29495 * 13 12 11 29 29 C 1.38103 * 120.06511 * 359.45421 * 28 13 12 30 30 H 0.97010 * 120.00016 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03478 * 0.02562 * 11 10 9 32 32 H 1.08006 * 119.96222 * 180.02562 * 12 11 10 33 33 H 1.08999 * 109.46596 * 330.00058 * 14 13 12 34 34 H 1.08998 * 109.47385 * 210.00269 * 14 13 12 35 35 H 1.09006 * 113.75958 * 108.10130 * 16 15 14 36 36 H 1.09002 * 113.76176 * 336.73877 * 16 15 14 37 37 H 1.08995 * 113.73733 * 269.26056 * 17 16 15 38 38 H 0.97004 * 120.00699 * 334.99965 * 18 17 16 39 39 H 1.07993 * 126.83500 * 359.97438 * 22 21 19 40 40 H 1.08006 * 125.57082 * 179.86487 * 23 22 21 41 41 H 1.07999 * 125.79356 * 180.02562 * 26 24 23 42 42 H 1.08995 * 113.76166 * 23.25878 * 27 15 14 43 43 H 1.08999 * 113.75608 * 251.89597 * 27 15 14 44 44 H 1.08000 * 119.96951 * 179.70662 * 28 13 12 45 45 H 1.07997 * 120.03853 * 180.26964 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3570 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0921 12 6 3.8534 -4.7986 -0.1997 13 6 5.2296 -4.8615 -0.3208 14 6 5.9138 -6.1991 -0.4387 15 7 6.0175 -6.5729 -1.8555 16 6 6.8888 -7.7560 -2.0292 17 6 7.4806 -7.0141 -3.2412 18 7 8.9380 -7.1217 -3.3443 19 6 9.5405 -6.9874 -4.5423 20 8 8.8743 -6.7773 -5.5380 21 6 11.0055 -7.0961 -4.6461 22 6 11.9501 -7.3527 -3.5536 23 6 13.1752 -7.3658 -4.1081 24 7 13.0545 -7.1471 -5.4495 25 1 13.7955 -7.1136 -6.0745 26 6 11.7596 -6.9845 -5.7816 27 6 7.0018 -5.7203 -2.5581 28 6 5.9798 -3.6997 -0.3285 29 6 5.3553 -2.4722 -0.2264 30 1 -0.4851 0.8401 -0.0004 31 1 2.1486 -3.5260 0.0020 32 1 3.2705 -5.7079 -0.1901 33 1 5.3334 -6.9522 0.0943 34 1 6.9120 -6.1360 -0.0055 35 1 6.3478 -8.6651 -2.2922 36 1 7.5982 -7.9025 -1.2147 37 1 6.9712 -7.2310 -4.1800 38 1 9.4694 -7.2895 -2.5503 39 1 11.7097 -7.4994 -2.5110 40 1 14.1027 -7.5275 -3.5789 41 1 11.3811 -6.7981 -6.7758 42 1 7.7441 -5.2714 -1.8983 43 1 6.5509 -5.0028 -3.2436 44 1 7.0548 -3.7522 -0.4184 45 1 5.9412 -1.5650 -0.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030348436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:41 Heat of formation + Delta-G solvation = 51.901710 kcal Electronic energy + Delta-G solvation = -27622.994036 eV Core-core repulsion = 23608.332319 eV Total energy + Delta-G solvation = -4014.661717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50535 -40.46362 -39.15203 -38.53941 -36.65661 -34.13499 -32.43287 -31.67117 -30.82863 -30.21984 -29.54249 -27.64913 -26.17675 -25.38146 -24.07796 -22.51609 -22.05554 -21.15162 -20.33904 -20.30725 -19.65858 -19.08956 -17.86950 -17.26970 -16.65526 -16.42711 -15.67764 -15.36090 -15.02598 -14.82655 -14.55044 -14.26920 -14.16693 -13.98995 -13.81387 -13.74003 -13.47750 -13.44026 -12.93400 -12.83753 -12.65468 -12.52588 -12.46101 -12.18858 -11.81679 -11.58365 -11.33098 -10.93705 -10.68207 -10.66034 -10.48241 -10.12969 -10.12084 -9.36137 -9.35321 -9.15308 -8.89608 -8.80545 -8.76008 -8.22778 -7.29909 -6.39558 -4.06013 1.45158 2.00459 2.15440 2.19660 2.69168 3.16247 3.23542 3.27542 3.33063 3.41668 3.93331 4.25478 4.39111 4.48348 4.54059 4.71807 4.76137 4.81697 4.87099 4.99731 5.07750 5.09078 5.14279 5.28701 5.33030 5.40943 5.51290 5.60248 5.66317 5.66707 5.80282 5.84942 5.98551 6.14328 6.25420 6.27603 6.34049 6.38903 6.47895 6.59015 6.82193 6.95676 6.97012 7.06951 7.27390 7.35309 7.39894 7.63419 7.82740 8.05924 8.15771 8.95705 9.58169 10.68042 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.001888 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.794547 B =14828.417547 C =15595.273516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.221 4.221 12 C -0.052 4.052 13 C -0.173 4.173 14 C 0.081 3.919 15 N -0.467 5.467 16 C -0.008 4.008 17 C 0.119 3.881 18 N -0.717 5.717 19 C 0.592 3.408 20 O -0.549 6.549 21 C -0.236 4.236 22 C -0.171 4.171 23 C -0.017 4.017 24 N -0.554 5.554 25 H 0.418 0.582 26 C 0.077 3.923 27 C -0.002 4.002 28 C -0.069 4.069 29 C -0.193 4.193 30 H 0.279 0.721 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.399 0.601 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.008 -17.739 -6.265 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.070 4.070 13 C -0.174 4.174 14 C -0.046 4.046 15 N -0.190 5.190 16 C -0.138 4.138 17 C 0.014 3.986 18 N -0.368 5.368 19 C 0.381 3.619 20 O -0.428 6.428 21 C -0.246 4.246 22 C -0.195 4.195 23 C -0.145 4.145 24 N -0.149 5.149 25 H 0.255 0.745 26 C -0.060 4.060 27 C -0.132 4.132 28 C -0.088 4.088 29 C -0.212 4.212 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.234 0.766 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.195 0.805 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 25.820 -17.242 -7.201 31.872 hybrid contribution 1.491 0.726 0.643 1.779 sum 27.312 -16.516 -6.559 32.584 Atomic orbital electron populations 1.69651 1.05548 1.28453 1.48049 1.24469 0.95034 0.98813 0.95715 0.86181 0.80292 0.81457 0.78965 1.19875 1.20802 1.18414 1.20771 0.76883 0.96647 1.52145 0.87591 1.83568 1.22640 1.25809 1.80265 1.19132 0.91690 0.85512 0.92756 1.21280 1.01128 0.91857 1.09800 1.20624 0.93368 0.96693 0.96348 1.19077 0.93821 0.93156 1.11386 1.21326 0.98631 0.95426 0.89228 1.68649 1.35218 1.02774 1.12321 1.24385 0.95603 0.97059 0.96753 1.23022 0.79676 0.96023 0.99923 1.45814 1.07455 1.73783 1.09743 1.17425 0.86179 0.75344 0.82974 1.90793 1.66038 1.49607 1.36363 1.20398 0.92667 1.17334 0.94211 1.22055 0.91560 1.07455 0.98425 1.21806 0.99835 1.09547 0.83311 1.41677 1.08009 1.56310 1.08893 0.74497 1.21885 0.82674 1.01704 0.99733 1.24412 0.94106 0.96846 0.97850 1.20455 0.97959 0.91510 0.98846 1.20154 0.91985 0.97722 1.11373 0.91071 0.84949 0.87172 0.90406 0.94213 0.88675 0.91108 0.85829 0.76643 0.83765 0.81364 0.80498 0.90977 0.88774 0.87489 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.95 28.62 -169.99 -4.86 17.08 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.39 -11.10 9.95 30.89 0.31 -10.79 16 8 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 9 O -0.22 -5.84 8.59 0.06 0.00 -5.84 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.22 -4.86 9.17 -39.40 -0.36 -5.22 16 12 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 13 C -0.17 -2.86 5.12 -104.58 -0.54 -3.39 16 14 C 0.08 1.04 4.97 -4.97 -0.02 1.02 16 15 N -0.47 -5.84 6.25 -239.88 -1.50 -7.34 16 16 C -0.01 -0.08 7.73 -2.77 -0.02 -0.10 16 17 C 0.12 1.26 4.43 -69.63 -0.31 0.96 16 18 N -0.72 -6.67 5.36 -56.07 -0.30 -6.97 16 19 C 0.59 6.87 7.81 -12.59 -0.10 6.77 16 20 O -0.55 -8.46 16.51 5.26 0.09 -8.37 16 21 C -0.24 -2.16 6.29 -103.35 -0.65 -2.81 16 22 C -0.17 -1.12 10.56 -37.50 -0.40 -1.52 16 23 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 24 N -0.55 -2.43 5.90 -12.84 -0.08 -2.50 16 25 H 0.42 0.43 8.96 -40.82 -0.37 0.06 16 26 C 0.08 0.56 11.69 -16.84 -0.20 0.36 16 27 C 0.00 -0.03 6.75 -2.77 -0.02 -0.05 16 28 C -0.07 -1.16 8.97 -39.61 -0.36 -1.52 16 29 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 30 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.13 3.06 5.64 -52.49 -0.30 2.76 16 32 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.04 0.45 7.63 -51.93 -0.40 0.05 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.53 7.77 -51.93 -0.40 0.12 16 37 H 0.12 1.55 7.46 -51.93 -0.39 1.16 16 38 H 0.40 2.67 7.85 -40.82 -0.32 2.35 16 39 H 0.14 0.67 7.69 -52.49 -0.40 0.26 16 40 H 0.17 0.30 8.06 -52.48 -0.42 -0.12 16 41 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.07 0.81 7.11 -51.93 -0.37 0.45 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.11 1.50 7.46 -52.49 -0.39 1.11 16 45 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -34.59 381.58 -9.83 -44.42 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.71 Total: 5.60 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.99 Total: -16.96 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -1.10 Total: -41.68 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.09 Total: -14.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.59 -9.83 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030348436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.323 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds