Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48498 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46918 * 300.00152 * 3 2 1 6 6 H 1.48501 * 109.46874 * 59.99838 * 3 2 1 7 7 C 1.38811 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99521 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00657 * 0.02562 * 7 2 1 10 10 C 1.47664 * 134.46112 * 179.97438 * 9 7 2 11 11 C 1.53509 * 85.97963 * 204.29680 * 10 9 7 12 12 C 1.47663 * 134.45306 * 359.96983 * 9 7 2 13 13 C 1.52675 * 113.57291 * 91.01449 * 11 10 9 14 14 C 1.53341 * 109.10841 * 73.81648 * 13 11 10 15 15 N 1.46881 * 108.76612 * 52.40569 * 14 13 11 16 16 C 1.34774 * 120.46628 * 124.46751 * 15 14 13 17 17 O 1.21650 * 119.99675 * 187.98370 * 16 15 14 18 18 C 1.46984 * 120.00098 * 7.98789 * 16 15 14 19 19 C 1.35842 * 125.11829 * 187.77206 * 18 16 15 20 20 C 1.46097 * 106.06708 * 179.97438 * 19 18 16 21 21 C 1.39451 * 135.07522 * 180.02562 * 20 19 18 22 22 N 1.31679 * 120.07451 * 179.97438 * 21 20 19 23 23 C 1.32309 * 122.14145 * 0.02562 * 22 21 20 24 24 C 1.37752 * 121.58164 * 359.97438 * 23 22 21 25 25 C 1.39231 * 118.96079 * 0.02562 * 24 23 22 26 26 O 1.34275 * 134.38024 * 180.02562 * 25 24 23 27 27 C 1.46883 * 119.06346 * 304.74194 * 15 14 13 28 28 C 1.52672 * 113.56231 * 222.23317 * 11 10 9 29 29 H 0.96996 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.08997 * 113.79176 * 90.02763 * 10 9 7 31 31 H 1.09005 * 113.78642 * 318.56214 * 10 9 7 32 32 H 1.09005 * 113.78946 * 41.43657 * 12 9 7 33 33 H 1.09001 * 113.79688 * 269.96774 * 12 9 7 34 34 H 1.08995 * 109.53383 * 313.92350 * 13 11 10 35 35 H 1.09000 * 109.52877 * 193.70158 * 13 11 10 36 36 H 1.09001 * 109.58775 * 292.61725 * 14 13 11 37 37 H 1.09000 * 109.58405 * 172.18890 * 14 13 11 38 38 H 1.08001 * 126.96767 * 0.02562 * 19 18 16 39 39 H 1.07994 * 119.96516 * 359.70066 * 21 20 19 40 40 H 1.08002 * 119.20437 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.51366 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.58654 * 175.04037 * 27 15 14 43 43 H 1.08992 * 109.59034 * 295.47547 * 27 15 14 44 44 H 1.09003 * 109.52846 * 46.07538 * 28 11 10 45 45 H 1.08994 * 109.52941 * 166.22056 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0005 11 6 0.3477 -4.0810 -0.6295 12 6 -0.1043 -2.7567 0.0006 13 6 0.3611 -4.0585 -2.1561 14 6 1.0377 -5.3346 -2.6710 15 7 0.3919 -6.4967 -2.0467 16 6 -0.1305 -7.4788 -2.8076 17 8 -0.7890 -8.3624 -2.2923 18 6 0.0955 -7.4824 -4.2600 19 6 -0.4995 -8.3276 -5.1414 20 6 0.0194 -7.9685 -6.4591 21 6 -0.1799 -8.4329 -7.7588 22 7 0.4617 -7.8753 -8.7644 23 6 1.3062 -6.8717 -8.5908 24 6 1.5616 -6.3517 -7.3410 25 6 0.9131 -6.8996 -6.2375 26 8 0.9261 -6.6459 -4.9190 27 6 0.3180 -6.5705 -0.5816 28 6 -0.3581 -5.3057 -0.0526 29 1 -0.4849 0.8400 -0.0004 30 1 1.8385 -4.2345 0.9979 31 1 2.5594 -4.0340 -0.6596 32 1 -0.7168 -2.1423 -0.6594 33 1 -0.5300 -2.8671 0.9980 34 1 0.9157 -3.1866 -2.5028 35 1 -0.6621 -4.0128 -2.5288 36 1 2.0954 -5.3191 -2.4079 37 1 0.9293 -5.3942 -3.7539 38 1 -1.2123 -9.1065 -4.9142 39 1 -0.8579 -9.2537 -7.9403 40 1 1.8073 -6.4501 -9.4496 41 1 2.2540 -5.5319 -7.2192 42 1 -0.2644 -7.4440 -0.2886 43 1 1.3238 -6.6438 -0.1682 44 1 -0.2941 -5.2843 1.0353 45 1 -1.4049 -5.2997 -0.3562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035743912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 79.149965 kcal Electronic energy + Delta-G solvation = -29552.212675 eV Core-core repulsion = 25538.732530 eV Total energy + Delta-G solvation = -4013.480144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.10828 -40.39758 -39.31188 -38.71080 -35.96556 -33.33700 -32.68311 -32.10186 -31.33039 -30.51875 -29.97978 -27.05289 -25.44246 -24.99589 -24.00913 -23.26151 -23.20215 -22.11444 -21.28225 -20.28100 -18.72201 -18.30114 -17.11245 -16.90983 -16.73351 -16.42146 -15.96564 -15.70774 -15.07581 -14.92965 -14.86958 -14.69347 -14.38309 -13.86202 -13.80276 -13.77725 -13.66875 -13.49529 -13.15806 -12.46881 -12.26904 -12.19278 -11.92502 -11.75123 -11.11865 -11.09722 -10.93262 -10.89299 -10.74243 -10.55095 -10.32336 -10.18327 -10.05031 -9.76110 -9.75231 -9.60001 -9.39223 -8.86273 -8.80989 -8.54034 -6.88364 -5.78516 -3.10413 0.08148 0.86286 1.40644 1.96511 2.78270 2.92573 3.36086 3.36284 3.41896 3.44339 3.87242 3.99585 4.11092 4.43443 4.47780 4.53664 4.69838 4.96553 4.98271 5.02504 5.08152 5.24310 5.27489 5.28305 5.35719 5.41849 5.45732 5.56367 5.67633 5.75273 5.80772 5.85491 5.93470 5.96486 6.07647 6.21995 6.28546 6.40310 6.48061 6.54913 6.57032 6.74794 6.76997 7.20520 7.21527 7.34265 7.51670 7.56163 7.81105 7.96882 9.03316 9.69463 10.59486 11.38422 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.002861 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.038076 B = 9785.643627 C =11363.363252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.111 4.111 12 C 0.174 3.826 13 C -0.095 4.095 14 C 0.095 3.905 15 N -0.590 5.590 16 C 0.595 3.405 17 O -0.522 6.522 18 C -0.017 4.017 19 C -0.101 4.101 20 C -0.199 4.199 21 C 0.173 3.827 22 N -0.495 5.495 23 C 0.116 3.884 24 C -0.159 4.159 25 C 0.096 3.904 26 O -0.167 6.167 27 C 0.115 3.885 28 C -0.118 4.118 29 H 0.252 0.748 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -17.088 -12.796 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.112 4.112 12 C 0.049 3.951 13 C -0.134 4.134 14 C -0.026 4.026 15 N -0.321 5.321 16 C 0.381 3.619 17 O -0.401 6.401 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.202 4.202 21 C 0.009 3.991 22 N -0.205 5.205 23 C -0.034 4.034 24 C -0.179 4.179 25 C 0.041 3.959 26 O -0.068 6.068 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.297 -17.206 -13.196 21.686 hybrid contribution 0.624 1.428 1.058 1.884 sum 0.921 -15.778 -12.138 19.928 Atomic orbital electron populations 1.69827 1.04968 1.25145 1.56828 1.24763 0.95637 0.97433 1.02622 0.86090 0.78745 0.83922 0.77268 1.20518 1.21734 1.21810 1.19054 0.90226 0.82075 1.43540 0.90368 1.45979 1.02338 0.99167 1.86032 1.22592 0.94242 0.86651 0.96473 1.22406 0.98146 0.95799 0.94856 1.22221 0.88081 0.88217 0.96622 1.21493 1.00853 0.96455 0.94549 1.22372 0.97317 0.84680 0.98243 1.48063 1.55902 1.20550 1.07535 1.16782 0.80024 0.82642 0.82429 1.90865 1.39819 1.38040 1.71333 1.22226 0.96705 0.94313 0.93364 1.22660 1.00717 1.00153 0.88755 1.20958 1.02517 1.00641 0.96071 1.22459 0.94778 0.96563 0.85306 1.67812 1.08295 1.10336 1.34026 1.22635 0.93640 0.91635 0.95468 1.21114 1.03491 1.03850 0.89433 1.20092 0.96641 0.95273 0.83907 1.84318 1.55697 1.50212 1.16541 1.21666 1.01740 0.99849 0.77407 1.21754 0.99749 0.93531 1.00676 0.93747 0.95039 0.94194 0.90983 0.95650 0.89122 0.92034 0.90645 0.88241 0.80703 0.81667 0.81332 0.83378 0.89076 0.90858 0.90362 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 11.39 55.49 0.63 -26.19 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.04 10.70 -15.06 -0.16 -6.20 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -14.95 3.53 -179.78 -0.64 -15.59 16 10 C 0.13 2.42 7.73 -3.15 -0.02 2.40 16 11 C -0.11 -1.91 0.77 -154.43 -0.12 -2.03 16 12 C 0.17 3.92 6.64 -3.17 -0.02 3.90 16 13 C -0.10 -1.53 5.21 -26.72 -0.14 -1.67 16 14 C 0.10 1.27 5.98 -3.66 -0.02 1.24 16 15 N -0.59 -7.92 2.95 -174.38 -0.51 -8.43 16 16 C 0.59 8.24 7.64 -12.72 -0.10 8.14 16 17 O -0.52 -8.23 16.25 5.23 0.09 -8.15 16 18 C -0.02 -0.21 6.73 -36.90 -0.25 -0.46 16 19 C -0.10 -1.06 10.81 -37.29 -0.40 -1.47 16 20 C -0.20 -2.03 6.43 -105.22 -0.68 -2.71 16 21 C 0.17 1.53 11.28 -17.17 -0.19 1.34 16 22 N -0.49 -4.73 10.34 -13.00 -0.13 -4.87 16 23 C 0.12 0.93 11.13 -17.52 -0.20 0.73 16 24 C -0.16 -1.37 10.13 -39.39 -0.40 -1.77 16 25 C 0.10 1.04 7.48 -38.14 -0.29 0.76 16 26 O -0.17 -1.99 7.08 3.71 0.03 -1.96 16 27 C 0.11 1.48 6.29 -3.91 -0.02 1.45 16 28 C -0.12 -1.69 5.24 -26.97 -0.14 -1.83 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.04 0.73 7.41 -51.93 -0.38 0.34 16 32 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 33 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 34 H 0.09 1.66 8.01 -51.93 -0.42 1.25 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.98 7.49 -51.93 -0.39 0.59 16 37 H 0.10 1.27 4.14 -53.73 -0.22 1.04 16 38 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.09 1.16 6.98 -51.93 -0.36 0.80 16 43 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -32.49 366.26 -9.20 -41.69 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.91 Total: -0.33 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.25 Total: 1.51 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.65 Total: -55.08 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.11 Total: -10.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.49 -9.20 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035743912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.835 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds