Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47406 * 240.00000 * 3 2 1 5 5 H 1.48503 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46914 * 120.00037 * 3 2 1 7 7 C 1.38810 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.47666 * 134.45540 * 180.02562 * 9 7 2 11 11 C 1.53511 * 85.97841 * 204.29278 * 10 9 7 12 12 C 1.47668 * 134.45889 * 359.97438 * 9 7 2 13 13 C 1.52678 * 113.57106 * 91.01635 * 11 10 9 14 14 C 1.53337 * 109.10907 * 73.81507 * 13 11 10 15 15 N 1.46880 * 108.76596 * 52.41003 * 14 13 11 16 16 C 1.34771 * 120.47041 * 124.46587 * 15 14 13 17 17 O 1.21557 * 120.00177 * 188.00720 * 16 15 14 18 18 C 1.47790 * 119.99726 * 8.01370 * 16 15 14 19 19 N 1.32817 * 120.07556 * 7.67639 * 18 16 15 20 20 C 1.31675 * 122.01286 * 180.02562 * 19 18 16 21 21 C 1.38394 * 121.69915 * 359.97438 * 20 19 18 22 22 C 1.38860 * 119.13357 * 0.02562 * 21 20 19 23 23 O 1.34426 * 134.63193 * 179.97438 * 22 21 20 24 24 C 1.34452 * 110.85012 * 179.97438 * 23 22 21 25 25 C 1.34307 * 110.16557 * 0.02562 * 24 23 22 26 26 C 1.40196 * 120.07101 * 187.70186 * 18 16 15 27 27 C 1.46889 * 119.06328 * 304.74154 * 15 14 13 28 28 C 1.52667 * 113.56955 * 222.23301 * 11 10 9 29 29 H 0.96999 * 119.99677 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.79151 * 90.03306 * 10 9 7 31 31 H 1.09001 * 113.79381 * 318.55859 * 10 9 7 32 32 H 1.08997 * 113.79000 * 41.42971 * 12 9 7 33 33 H 1.09008 * 113.78649 * 269.97056 * 12 9 7 34 34 H 1.08997 * 109.52887 * 313.92822 * 13 11 10 35 35 H 1.09003 * 109.53237 * 193.70708 * 13 11 10 36 36 H 1.09000 * 109.59110 * 292.61688 * 14 13 11 37 37 H 1.09000 * 109.58328 * 172.18994 * 14 13 11 38 38 H 1.07997 * 119.14841 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.43046 * 179.97438 * 21 20 19 40 40 H 1.08001 * 124.91632 * 179.97438 * 24 23 22 41 41 H 1.07997 * 126.89055 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.58812 * 175.04009 * 27 15 14 43 43 H 1.09000 * 109.58594 * 295.47543 * 27 15 14 44 44 H 1.09001 * 109.52903 * 46.07474 * 28 11 10 45 45 H 1.08997 * 109.53341 * 166.22541 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7212 -3.8107 -0.0005 11 6 0.3476 -4.0810 -0.6305 12 6 -0.1044 -2.7567 0.0004 13 6 0.3610 -4.0585 -2.1571 14 6 1.0376 -5.3345 -2.6720 15 7 0.3917 -6.4967 -2.0477 16 6 -0.1307 -7.4788 -2.8086 17 8 -0.7891 -8.3615 -2.2938 18 6 0.0971 -7.4826 -4.2688 19 7 0.9382 -6.6110 -4.8136 20 6 1.1692 -6.5802 -6.1095 21 6 0.5469 -7.4578 -6.9801 22 6 -0.3444 -8.3944 -6.4736 23 8 -1.1011 -9.3659 -7.0126 24 6 -1.8051 -10.0066 -6.0631 25 6 -1.5400 -9.4805 -4.8561 26 6 -0.5747 -8.4061 -5.0821 27 6 0.3178 -6.5704 -0.5826 28 6 -0.3583 -5.3056 -0.0537 29 1 -0.4849 0.8401 0.0004 30 1 1.8384 -4.2345 0.9969 31 1 2.5593 -4.0340 -0.6606 32 1 -0.7174 -2.1421 -0.6588 33 1 -0.5293 -2.8674 0.9982 34 1 0.9157 -3.1866 -2.5038 35 1 -0.6623 -4.0127 -2.5299 36 1 2.0953 -5.3191 -2.4089 37 1 0.9291 -5.3941 -3.7549 38 1 1.8628 -5.8519 -6.5031 39 1 0.7513 -7.4142 -8.0398 40 1 -2.4859 -10.8250 -6.2447 41 1 -1.9567 -9.7890 -3.9087 42 1 -0.2646 -7.4440 -0.2895 43 1 1.3237 -6.6438 -0.1692 44 1 -0.2942 -5.2843 1.0342 45 1 -1.4051 -5.2996 -0.3573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035756336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 91.918510 kcal Electronic energy + Delta-G solvation = -29769.737805 eV Core-core repulsion = 25756.811347 eV Total energy + Delta-G solvation = -4012.926459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03084 -40.54489 -39.22856 -38.33001 -35.71088 -33.24140 -32.77001 -32.13382 -30.84796 -30.32376 -29.90620 -26.91202 -25.39715 -24.86797 -23.65917 -23.36491 -22.89457 -22.18034 -21.09956 -19.88383 -18.33215 -18.12808 -17.33841 -16.68633 -16.63500 -16.42230 -16.00027 -15.76562 -15.23661 -14.80938 -14.71086 -14.53236 -14.11447 -13.73226 -13.71545 -13.51624 -13.45608 -13.18242 -12.84922 -12.50525 -12.19269 -12.11364 -11.98802 -11.55286 -11.04965 -11.01119 -10.79192 -10.73205 -10.66509 -10.56148 -10.30360 -10.14722 -9.82732 -9.64002 -9.46524 -9.26827 -8.97148 -8.74377 -8.69401 -8.29209 -6.78944 -5.70201 -3.01583 0.02993 0.80177 1.95258 2.24983 2.59925 2.97647 3.42297 3.46485 3.47701 3.56392 3.84360 4.03400 4.18150 4.51045 4.52162 4.67262 4.85825 4.90619 5.13190 5.23651 5.32324 5.36275 5.40268 5.43043 5.50668 5.55564 5.62188 5.73376 5.82798 5.90540 5.98059 6.04237 6.09566 6.28133 6.33234 6.42726 6.45806 6.56927 6.68775 6.73814 6.80891 6.92035 6.96816 7.31518 7.32681 7.46869 7.56903 7.65507 8.05561 8.15686 9.11531 9.77661 10.69405 11.46724 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.002703 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.939105 B =10357.432369 C =11226.283218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.127 3.873 11 C -0.110 4.110 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.066 3.934 15 N -0.577 5.577 16 C 0.566 3.434 17 O -0.540 6.540 18 C 0.145 3.855 19 N -0.448 5.448 20 C 0.106 3.894 21 C -0.137 4.137 22 C 0.082 3.918 23 O -0.189 6.189 24 C 0.001 3.999 25 C -0.174 4.174 26 C -0.135 4.135 27 C 0.112 3.888 28 C -0.117 4.117 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.149 0.851 38 H 0.178 0.822 39 H 0.149 0.851 40 H 0.216 0.784 41 H 0.174 0.826 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -20.018 -14.220 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.135 4.135 14 C -0.056 4.056 15 N -0.308 5.308 16 C 0.352 3.648 17 O -0.418 6.418 18 C 0.003 3.997 19 N -0.161 5.161 20 C -0.047 4.047 21 C -0.158 4.158 22 C 0.027 3.973 23 O -0.089 6.089 24 C -0.063 4.063 25 C -0.193 4.193 26 C -0.139 4.139 27 C -0.010 4.010 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.195 0.805 39 H 0.167 0.833 40 H 0.232 0.768 41 H 0.191 0.809 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.569 -19.578 -13.704 23.949 hybrid contribution 0.054 0.534 -0.086 0.543 sum -1.515 -19.044 -13.790 23.561 Atomic orbital electron populations 1.69814 1.04950 1.25244 1.56896 1.24751 0.95619 0.97361 1.02790 0.86245 0.78478 0.83439 0.77862 1.21153 1.21659 1.21338 1.18967 0.90160 0.82165 1.43460 0.90516 1.45957 1.02373 0.99161 1.85986 1.22582 0.94507 0.86486 0.96328 1.22416 0.97827 0.95427 0.95447 1.22234 0.88006 0.88527 0.96479 1.21518 1.00564 0.97385 0.93988 1.23269 0.96187 0.83180 1.02973 1.47996 1.55319 1.20680 1.06791 1.17676 0.79921 0.82498 0.84661 1.90731 1.39771 1.38187 1.73097 1.20835 0.93224 0.91270 0.94393 1.67755 1.15446 1.19583 1.13351 1.22864 0.97076 0.96769 0.87972 1.21182 0.97055 0.94928 1.02604 1.19732 0.94877 0.91472 0.91225 1.83978 1.48238 1.39863 1.36772 1.24280 0.97410 0.98636 0.85952 1.22716 1.00061 0.96842 0.99728 1.20589 1.00640 0.99284 0.93372 1.21612 1.01321 0.99465 0.78573 1.21725 0.99620 0.93846 1.00362 0.93732 0.95277 0.94135 0.91088 0.95900 0.89580 0.92650 0.91658 0.83529 0.80458 0.83320 0.76790 0.80908 0.89521 0.91258 0.90775 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 11.39 55.49 0.63 -26.87 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.57 3.53 -179.76 -0.64 -16.20 16 10 C 0.13 2.59 7.73 -3.15 -0.02 2.57 16 11 C -0.11 -2.05 0.77 -154.42 -0.12 -2.17 16 12 C 0.17 4.09 6.64 -3.15 -0.02 4.07 16 13 C -0.10 -1.68 5.22 -26.72 -0.14 -1.82 16 14 C 0.07 0.97 5.82 -3.66 -0.02 0.95 16 15 N -0.58 -8.67 2.95 -174.08 -0.51 -9.19 16 16 C 0.57 8.72 7.64 -12.36 -0.09 8.62 16 17 O -0.54 -9.12 14.67 5.32 0.08 -9.04 16 18 C 0.15 1.97 6.63 -82.80 -0.55 1.42 16 19 N -0.45 -5.34 6.08 -9.68 -0.06 -5.40 16 20 C 0.11 0.92 11.13 -17.56 -0.20 0.72 16 21 C -0.14 -1.12 10.13 -39.29 -0.40 -1.52 16 22 C 0.08 0.86 7.48 -38.29 -0.29 0.57 16 23 O -0.19 -1.79 10.57 4.97 0.05 -1.74 16 24 C 0.00 0.01 11.97 29.35 0.35 0.36 16 25 C -0.17 -1.82 10.32 -37.77 -0.39 -2.21 16 26 C -0.13 -1.67 6.16 -104.90 -0.65 -2.31 16 27 C 0.11 1.62 6.29 -3.90 -0.02 1.60 16 28 C -0.12 -1.84 5.24 -26.97 -0.14 -1.98 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.04 0.79 7.41 -51.93 -0.38 0.41 16 32 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 33 H 0.02 0.56 8.09 -51.92 -0.42 0.14 16 34 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 37 H 0.15 2.04 3.85 -90.55 -0.35 1.69 16 38 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.22 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.17 1.81 7.32 -52.49 -0.38 1.43 16 42 H 0.09 1.24 6.98 -51.93 -0.36 0.88 16 43 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 44 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -34.17 362.59 -8.96 -43.13 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.99 Total: 0.40 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.96 Total: 2.19 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.58 Total: -57.66 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.13 Total: -10.77 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.17 -8.96 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035756336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.049 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds