Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48501 * 109.46943 * 270.00628 * 3 2 1 5 5 H 1.48501 * 109.46785 * 30.00112 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00317 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34770 * 115.76319 * 180.54056 * 15 14 12 17 17 O 1.21653 * 120.00287 * 0.02562 * 16 15 14 18 18 C 1.46989 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.35842 * 125.12159 * 179.71484 * 18 16 15 20 20 C 1.46097 * 106.07038 * 179.89730 * 19 18 16 21 21 C 1.39451 * 135.07610 * 180.02562 * 20 19 18 22 22 N 1.31674 * 120.07635 * 180.34656 * 21 20 19 23 23 C 1.32308 * 122.14486 * 359.97438 * 22 21 20 24 24 C 1.37757 * 121.57705 * 359.97438 * 23 22 21 25 25 C 1.39234 * 118.95978 * 0.02898 * 24 23 22 26 26 O 1.34285 * 134.37690 * 179.97438 * 25 24 23 27 27 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 28 28 C 1.51864 * 112.74934 * 6.20384 * 27 15 14 29 29 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.98356 * 90.75376 * 29 9 7 31 31 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 33 33 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 34 34 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 35 35 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 36 36 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 37 37 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 38 38 H 1.08004 * 126.96396 * 359.97438 * 19 18 16 39 39 H 1.07998 * 119.96107 * 0.31777 * 21 20 19 40 40 H 1.07997 * 119.21387 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.51825 * 180.02562 * 24 23 22 42 42 H 1.09003 * 108.82833 * 245.36776 * 27 15 14 43 43 H 1.08996 * 108.82722 * 127.05014 * 27 15 14 44 44 H 1.08993 * 109.00183 * 203.59622 * 28 27 15 45 45 H 1.09003 * 108.92922 * 84.79401 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8429 -3.4728 -4.0917 17 8 0.8335 -3.7712 -4.7016 18 6 2.9646 -2.8341 -4.7949 19 6 2.9881 -2.5355 -6.1198 20 6 4.2868 -1.9156 -6.3717 21 6 4.9299 -1.3913 -7.4925 22 7 6.1444 -0.8943 -7.3842 23 6 6.7949 -0.8699 -6.2323 24 6 6.2335 -1.3658 -5.0762 25 6 4.9508 -1.9048 -5.1270 26 8 4.1280 -2.4581 -4.2214 27 6 3.1690 -3.3365 -2.1401 28 6 3.2582 -3.7886 -0.6931 29 6 1.9174 -3.7300 -0.0016 30 1 2.0489 -4.0603 1.0288 31 1 -0.4849 0.8401 0.0004 32 1 -0.5701 -2.0626 -0.8770 33 1 -0.5637 -2.1141 0.9075 34 1 -1.2969 -4.2793 -0.6687 35 1 -0.5707 -4.4632 0.9632 36 1 0.6112 -5.2996 -2.6903 37 1 -0.0791 -3.7138 -2.3522 38 1 2.2049 -2.7181 -6.8407 39 1 4.4315 -1.3934 -8.4506 40 1 7.7899 -0.4513 -6.1976 41 1 6.7798 -1.3368 -4.1450 42 1 3.2533 -2.2502 -2.1749 43 1 4.0004 -3.7697 -2.6960 44 1 3.9596 -3.1447 -0.1627 45 1 3.6274 -4.8139 -0.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 53.460644 kcal Electronic energy + Delta-G solvation = -30844.119022 eV Core-core repulsion = 26829.524905 eV Total energy + Delta-G solvation = -4014.594117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.84608 -40.39143 -39.07821 -38.23821 -35.28831 -33.07199 -33.00612 -31.97474 -31.82881 -30.24746 -29.38563 -27.93597 -25.62498 -24.82672 -23.75848 -23.26667 -22.75482 -21.84842 -20.46110 -20.07147 -18.29075 -18.22977 -17.52161 -16.84270 -16.45199 -16.14582 -15.81493 -15.72358 -15.43696 -14.79843 -14.62439 -14.48613 -14.17277 -13.81398 -13.65357 -13.56317 -13.35788 -13.18455 -12.93656 -12.55960 -12.14085 -11.74901 -11.58541 -11.54222 -11.28295 -10.99889 -10.82745 -10.76668 -10.49519 -10.25930 -10.17012 -9.92241 -9.91439 -9.87588 -9.75146 -9.62427 -9.53781 -8.65570 -8.61340 -8.14350 -6.87870 -5.75887 -3.08546 0.32111 1.08423 1.66768 2.29070 3.16181 3.27524 3.35128 3.39669 3.42486 3.56476 4.12096 4.21978 4.35843 4.43704 4.70037 4.80287 4.93671 5.02049 5.13311 5.21509 5.22199 5.36064 5.42621 5.47512 5.49643 5.55992 5.65553 5.70973 5.86951 5.92763 6.00359 6.00613 6.17765 6.17953 6.24265 6.27220 6.39464 6.42494 6.59631 6.66942 6.70361 6.80641 6.98446 7.47716 7.50850 7.56758 7.70550 7.77096 8.19235 8.19704 9.15223 9.77649 10.45016 11.36416 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.004546 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.078736 B = 6157.619138 C = 7584.076666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.114 4.114 13 H 0.084 0.916 14 C 0.142 3.858 15 N -0.556 5.556 16 C 0.578 3.422 17 O -0.523 6.523 18 C -0.006 4.006 19 C -0.110 4.110 20 C -0.196 4.196 21 C 0.171 3.829 22 N -0.496 5.496 23 C 0.111 3.889 24 C -0.157 4.157 25 C 0.096 3.904 26 O -0.164 6.164 27 C 0.121 3.879 28 C -0.122 4.122 29 C 0.169 3.831 30 H 0.027 0.973 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -8.258 -8.672 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.102 0.898 14 C 0.020 3.980 15 N -0.284 5.284 16 C 0.364 3.636 17 O -0.402 6.402 18 C -0.056 4.056 19 C -0.132 4.132 20 C -0.199 4.199 21 C 0.007 3.993 22 N -0.207 5.207 23 C -0.038 4.038 24 C -0.178 4.178 25 C 0.040 3.960 26 O -0.064 6.064 27 C -0.001 4.001 28 C -0.160 4.160 29 C 0.061 3.939 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.192 0.808 39 H 0.182 0.818 40 H 0.185 0.815 41 H 0.165 0.835 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.249 -7.876 -9.226 15.254 hybrid contribution 0.026 0.780 0.826 1.136 sum 9.275 -7.096 -8.400 14.385 Atomic orbital electron populations 1.69941 1.04823 1.24994 1.56712 1.24749 0.95615 0.97459 1.02298 0.86246 0.78722 0.84034 0.77559 1.21741 1.21625 1.20664 1.18887 0.90197 0.82141 1.43943 0.90520 1.44370 1.01443 0.99160 1.86770 1.21317 0.84281 0.88224 1.01020 1.23337 0.95566 0.99722 0.99464 1.22456 0.98774 0.98876 0.93242 0.89763 1.20420 0.87153 0.96881 0.93561 1.46279 1.16996 1.57620 1.07489 1.16865 0.84558 0.79568 0.82575 1.90846 1.28938 1.53433 1.66996 1.22240 0.86531 1.03939 0.92843 1.22605 0.96243 0.99475 0.94868 1.20960 0.96367 1.06641 0.95974 1.22412 0.89624 0.90333 0.96964 1.67779 1.08554 1.16988 1.27336 1.22566 0.99638 0.95094 0.86531 1.21069 0.91909 1.02981 1.01821 1.20030 0.92846 0.95444 0.87635 1.84455 1.23128 1.63186 1.35615 1.20917 0.83345 1.01602 0.94228 1.21236 0.99914 1.00608 0.94277 1.20248 0.90532 0.87475 0.95669 0.95550 0.93765 0.93513 0.93886 0.91816 0.92091 0.92670 0.90899 0.80819 0.81788 0.81519 0.83550 0.90109 0.91878 0.90332 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.41 55.49 0.58 -25.87 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.22 -5.80 8.84 -15.06 -0.13 -5.93 16 8 H 0.08 1.91 6.89 -52.49 -0.36 1.55 16 9 N -0.59 -13.90 3.04 -164.19 -0.50 -14.40 16 10 C 0.18 4.09 4.82 -2.54 -0.01 4.08 16 11 C -0.14 -2.51 6.14 -24.11 -0.15 -2.66 16 12 C -0.11 -1.87 3.80 -88.93 -0.34 -2.20 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.14 2.49 4.61 -6.19 -0.03 2.46 16 15 N -0.56 -9.99 3.19 -180.61 -0.58 -10.56 16 16 C 0.58 10.57 7.50 -12.72 -0.10 10.48 16 17 O -0.52 -10.45 16.40 5.23 0.09 -10.36 16 18 C -0.01 -0.09 6.65 -36.90 -0.25 -0.34 16 19 C -0.11 -1.54 10.80 -37.29 -0.40 -1.94 16 20 C -0.20 -2.60 6.43 -105.22 -0.68 -3.27 16 21 C 0.17 1.94 11.28 -17.17 -0.19 1.75 16 22 N -0.50 -5.86 10.34 -13.00 -0.13 -6.00 16 23 C 0.11 1.14 11.13 -17.52 -0.20 0.94 16 24 C -0.16 -1.76 10.13 -39.39 -0.40 -2.16 16 25 C 0.10 1.34 7.48 -38.14 -0.29 1.06 16 26 O -0.16 -2.56 6.62 3.67 0.02 -2.53 16 27 C 0.12 2.06 4.21 -5.83 -0.02 2.03 16 28 C -0.12 -1.98 5.10 -28.33 -0.14 -2.13 16 29 C 0.17 3.17 2.92 -68.35 -0.20 2.97 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.24 7.13 -51.93 -0.37 0.87 16 33 H 0.04 1.11 7.58 -51.93 -0.39 0.72 16 34 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 37 H 0.07 1.46 6.56 -51.93 -0.34 1.12 16 38 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.08 1.60 6.67 -51.93 -0.35 1.25 16 43 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 44 H 0.08 1.30 7.36 -51.93 -0.38 0.92 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -31.67 355.73 -9.67 -41.34 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.87 Total: 1.32 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -3.62 Total: 4.91 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.63 Total: -56.83 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.11 Total: -12.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.67 -9.67 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.797 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds