Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47221 * 270.00377 * 3 2 1 5 5 H 1.48500 * 109.46591 * 30.00120 * 3 2 1 6 6 H 1.48499 * 109.46942 * 150.00425 * 3 2 1 7 7 C 1.38812 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00261 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.48254 * 126.39618 * 359.97438 * 9 7 2 11 11 C 1.55288 * 106.99413 * 184.93527 * 10 9 7 12 12 C 1.53737 * 101.87439 * 22.48891 * 11 10 9 13 13 H 1.08997 * 111.31214 * 79.82494 * 12 11 10 14 14 C 1.52241 * 114.74362 * 207.21870 * 12 11 10 15 15 N 1.47721 * 106.36841 * 169.57891 * 14 12 11 16 16 C 1.34775 * 119.68636 * 127.94270 * 15 14 12 17 17 O 1.21659 * 119.99750 * 353.34027 * 16 15 14 18 18 C 1.46979 * 120.00106 * 173.34108 * 16 15 14 19 19 C 1.35844 * 125.12140 * 172.40742 * 18 16 15 20 20 C 1.46092 * 106.07440 * 180.02562 * 19 18 16 21 21 C 1.39444 * 135.08076 * 180.02562 * 20 19 18 22 22 N 1.31672 * 120.08005 * 179.97438 * 21 20 19 23 23 C 1.32309 * 122.14021 * 359.97438 * 22 21 20 24 24 C 1.37757 * 121.58267 * 359.97438 * 23 22 21 25 25 C 1.39235 * 118.95736 * 0.02562 * 24 23 22 26 26 O 1.34285 * 134.38050 * 180.34652 * 25 24 23 27 27 C 1.46593 * 120.62948 * 307.96091 * 15 14 12 28 28 C 1.53961 * 110.57547 * 47.80603 * 27 15 14 29 29 C 1.45470 * 126.40424 * 180.02562 * 9 7 2 30 30 H 1.08993 * 108.77552 * 265.96349 * 29 9 7 31 31 H 0.96996 * 120.00097 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.95127 * 65.59705 * 10 9 7 33 33 H 1.09000 * 109.93377 * 304.26458 * 10 9 7 34 34 H 1.08999 * 110.95369 * 264.33252 * 11 10 9 35 35 H 1.09001 * 110.95193 * 140.64416 * 11 10 9 36 36 H 1.09001 * 110.07187 * 288.79111 * 14 12 11 37 37 H 1.09010 * 110.06948 * 50.36843 * 14 12 11 38 38 H 1.08008 * 126.96149 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.95562 * 359.97093 * 21 20 19 40 40 H 1.07994 * 119.20845 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.51963 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.25755 * 168.08211 * 27 15 14 43 43 H 1.09002 * 109.26115 * 287.52394 * 27 15 14 44 44 H 1.09001 * 109.87700 * 68.40138 * 28 27 15 45 45 H 1.08994 * 109.88207 * 189.47972 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1478 -2.5532 0.0005 11 6 -0.4340 -4.0742 0.1278 12 6 0.8689 -4.5893 0.7609 13 1 0.8865 -4.4066 1.8353 14 6 1.2012 -6.0407 0.4436 15 7 2.5831 -6.2641 0.9153 16 6 2.8501 -7.3032 1.7311 17 8 1.9401 -7.9791 2.1728 18 6 4.2406 -7.6197 2.0870 19 6 4.6208 -8.5426 3.0084 20 6 6.0813 -8.5157 3.0291 21 6 7.0716 -9.1993 3.7338 22 7 8.3420 -8.9334 3.5123 23 6 8.7278 -8.0259 2.6301 24 6 7.8160 -7.3056 1.8902 25 6 6.4570 -7.5420 2.0798 26 8 5.3327 -7.0419 1.5421 27 6 3.6667 -5.3662 0.5050 28 6 3.2477 -3.8955 0.6836 29 6 1.9078 -3.7212 -0.0005 30 1 1.9816 -4.0717 -1.0299 31 1 -0.4850 0.8400 0.0004 32 1 -0.5653 -2.1735 -0.9321 33 1 -0.5807 -2.0216 0.8480 34 1 -0.5957 -4.5237 -0.8519 35 1 -1.2851 -4.2571 0.7838 36 1 0.5147 -6.7050 0.9685 37 1 1.1406 -6.2119 -0.6313 38 1 3.9742 -9.1693 3.6049 39 1 6.7961 -9.9476 4.4621 40 1 9.7829 -7.8455 2.4867 41 1 8.1500 -6.5685 1.1750 42 1 4.5485 -5.5651 1.1140 43 1 3.9061 -5.5469 -0.5430 44 1 3.1549 -3.6628 1.7445 45 1 3.9873 -3.2408 0.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 54.537760 kcal Electronic energy + Delta-G solvation = -29638.762760 eV Core-core repulsion = 25624.215351 eV Total energy + Delta-G solvation = -4014.547410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.11964 -40.32732 -39.26969 -38.34799 -35.59858 -33.34022 -32.83206 -32.05958 -31.69450 -30.53442 -29.50781 -28.23994 -25.55409 -24.80310 -23.92808 -23.19736 -22.47628 -21.99574 -20.58286 -20.07902 -19.50402 -18.53640 -17.83203 -16.96186 -16.52307 -16.38233 -15.90899 -15.68854 -15.28128 -15.00127 -14.86350 -14.49820 -14.19931 -14.00324 -13.78787 -13.71890 -13.61203 -13.23610 -13.05729 -12.64701 -12.39176 -11.97589 -11.72993 -11.55282 -11.44140 -10.89680 -10.83553 -10.79713 -10.72259 -10.44788 -10.16741 -10.11079 -10.06757 -9.92381 -9.77993 -9.66244 -9.54322 -8.90780 -8.66649 -8.60217 -6.88562 -5.75765 -3.09202 0.07369 0.84742 1.40576 1.96062 2.78060 2.93164 3.34619 3.36571 3.41514 3.43633 3.86026 3.98420 4.10081 4.44803 4.46713 4.53251 4.69298 4.95819 4.96590 5.02624 5.16765 5.24059 5.26551 5.32206 5.42689 5.47491 5.51575 5.64801 5.73961 5.79308 5.81117 5.92502 5.96126 6.07620 6.10691 6.15696 6.24461 6.39036 6.47241 6.54631 6.57662 6.72666 6.99480 7.19892 7.50206 7.50669 7.56777 7.76665 7.82475 8.19724 9.14846 9.78423 10.46106 11.36782 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002887 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.971114 B = 9695.405094 C =11250.021153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.126 3.874 15 N -0.591 5.591 16 C 0.592 3.408 17 O -0.520 6.520 18 C -0.017 4.017 19 C -0.101 4.101 20 C -0.198 4.198 21 C 0.173 3.827 22 N -0.495 5.495 23 C 0.116 3.884 24 C -0.159 4.159 25 C 0.095 3.905 26 O -0.168 6.168 27 C 0.100 3.900 28 C -0.128 4.128 29 C 0.167 3.833 30 H 0.021 0.979 31 H 0.253 0.747 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.148 0.852 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.961 -17.616 3.540 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.145 4.145 13 H 0.100 0.900 14 C 0.005 3.995 15 N -0.322 5.322 16 C 0.379 3.621 17 O -0.398 6.398 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.201 4.201 21 C 0.009 3.991 22 N -0.205 5.205 23 C -0.034 4.034 24 C -0.179 4.179 25 C 0.040 3.960 26 O -0.068 6.068 27 C -0.022 4.022 28 C -0.167 4.167 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.193 0.807 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.166 0.834 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.066 -17.864 3.932 21.912 hybrid contribution -0.129 1.495 -0.490 1.578 sum 11.937 -16.369 3.443 20.549 Atomic orbital electron populations 1.69932 1.04902 1.25098 1.56903 1.24793 0.95681 0.97651 1.02249 0.86154 0.78601 0.83642 0.77570 1.21605 1.21689 1.20713 1.18986 0.90340 0.82299 1.43894 0.90394 1.44237 1.01655 0.99408 1.86639 1.21558 0.83881 0.88249 1.01046 1.22719 0.95641 0.99711 0.99356 1.22643 0.98096 0.92956 1.00840 0.90047 1.21784 0.80526 0.97731 0.99503 1.48274 1.10806 1.26562 1.46567 1.16836 0.84435 0.81470 0.79400 1.90871 1.43393 1.51666 1.53918 1.22246 0.86587 0.98420 0.99336 1.22667 0.92181 0.98734 0.98709 1.20961 0.94765 1.02032 1.02381 1.22461 0.86239 0.95357 0.95009 1.67810 1.17967 1.16959 1.17734 1.22629 1.00021 0.90407 0.90353 1.21099 0.87509 1.04619 1.04699 1.20092 0.88541 0.93760 0.93609 1.84345 1.12219 1.54497 1.55753 1.22265 0.88693 0.90301 1.00990 1.21876 0.99551 0.93097 1.02142 1.20629 0.90964 0.87359 0.95152 0.96141 0.93713 0.94252 0.92672 0.92247 0.91927 0.88791 0.90672 0.80670 0.81646 0.81352 0.83436 0.88442 0.91191 0.91346 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.44 55.49 0.58 -26.01 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.07 9.88 -15.06 -0.15 -6.21 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.59 -14.50 3.35 -163.07 -0.55 -15.04 16 10 C 0.18 4.16 5.45 -1.86 -0.01 4.15 16 11 C -0.14 -2.42 6.53 -25.14 -0.16 -2.58 16 12 C -0.12 -2.15 2.85 -89.39 -0.26 -2.40 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.82 5.97 -3.76 -0.02 1.80 16 15 N -0.59 -8.46 3.00 -173.91 -0.52 -8.98 16 16 C 0.59 8.57 7.63 -12.72 -0.10 8.47 16 17 O -0.52 -8.57 16.20 5.23 0.08 -8.48 16 18 C -0.02 -0.21 6.68 -36.90 -0.25 -0.46 16 19 C -0.10 -1.08 10.81 -37.29 -0.40 -1.49 16 20 C -0.20 -2.03 6.43 -105.22 -0.68 -2.71 16 21 C 0.17 1.53 11.27 -17.17 -0.19 1.34 16 22 N -0.49 -4.69 10.34 -13.00 -0.13 -4.82 16 23 C 0.12 0.90 11.13 -17.52 -0.20 0.71 16 24 C -0.16 -1.33 10.13 -39.39 -0.40 -1.73 16 25 C 0.10 1.02 7.48 -38.13 -0.29 0.74 16 26 O -0.17 -1.99 7.06 3.69 0.03 -1.96 16 27 C 0.10 1.35 5.86 -3.49 -0.02 1.33 16 28 C -0.13 -2.13 5.48 -27.01 -0.15 -2.27 16 29 C 0.17 3.23 2.55 -68.03 -0.17 3.06 16 30 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.06 1.45 7.22 -51.93 -0.37 1.07 16 34 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.36 6.98 -51.93 -0.36 1.00 16 37 H 0.08 1.01 8.08 -51.92 -0.42 0.59 16 38 H 0.18 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.10 1.24 4.30 -53.30 -0.23 1.01 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 45 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -31.84 361.23 -9.54 -41.38 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.91 Total: 0.39 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.53 Total: 1.44 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.62 Total: -54.85 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.11 Total: -10.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.84 -9.54 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.914 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds