Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47221 * 270.00377 * 3 2 1 5 5 H 1.48500 * 109.46591 * 30.00120 * 3 2 1 6 6 H 1.48499 * 109.46942 * 150.00425 * 3 2 1 7 7 C 1.38812 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00261 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.48254 * 126.39618 * 359.97438 * 9 7 2 11 11 C 1.55288 * 106.99413 * 184.93527 * 10 9 7 12 12 C 1.53737 * 101.87439 * 22.48891 * 11 10 9 13 13 H 1.08997 * 111.31214 * 79.82494 * 12 11 10 14 14 C 1.52241 * 114.74362 * 207.21870 * 12 11 10 15 15 N 1.47721 * 106.36841 * 169.57891 * 14 12 11 16 16 C 1.34775 * 119.68636 * 127.94270 * 15 14 12 17 17 O 1.21659 * 119.99750 * 353.34027 * 16 15 14 18 18 C 1.46979 * 120.00106 * 173.34108 * 16 15 14 19 19 C 1.35844 * 125.12140 * 172.40742 * 18 16 15 20 20 C 1.46092 * 106.07440 * 180.02562 * 19 18 16 21 21 C 1.39444 * 135.08076 * 180.02562 * 20 19 18 22 22 N 1.31672 * 120.08005 * 179.97438 * 21 20 19 23 23 C 1.32309 * 122.14021 * 359.97438 * 22 21 20 24 24 C 1.37757 * 121.58267 * 359.97438 * 23 22 21 25 25 C 1.39235 * 118.95736 * 0.02562 * 24 23 22 26 26 O 1.34285 * 134.38050 * 180.34652 * 25 24 23 27 27 C 1.46593 * 120.62948 * 307.96091 * 15 14 12 28 28 C 1.53961 * 110.57547 * 47.80603 * 27 15 14 29 29 C 1.45470 * 126.40424 * 180.02562 * 9 7 2 30 30 H 1.08993 * 108.77552 * 265.96349 * 29 9 7 31 31 H 0.96996 * 120.00097 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.95127 * 65.59705 * 10 9 7 33 33 H 1.09000 * 109.93377 * 304.26458 * 10 9 7 34 34 H 1.08999 * 110.95369 * 264.33252 * 11 10 9 35 35 H 1.09001 * 110.95193 * 140.64416 * 11 10 9 36 36 H 1.09001 * 110.07187 * 288.79111 * 14 12 11 37 37 H 1.09010 * 110.06948 * 50.36843 * 14 12 11 38 38 H 1.08008 * 126.96149 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.95562 * 359.97093 * 21 20 19 40 40 H 1.07994 * 119.20845 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.51963 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.25755 * 168.08211 * 27 15 14 43 43 H 1.09002 * 109.26115 * 287.52394 * 27 15 14 44 44 H 1.09001 * 109.87700 * 68.40138 * 28 27 15 45 45 H 1.08994 * 109.88207 * 189.47972 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1478 -2.5532 0.0005 11 6 -0.4340 -4.0742 0.1278 12 6 0.8689 -4.5893 0.7609 13 1 0.8865 -4.4066 1.8353 14 6 1.2012 -6.0407 0.4436 15 7 2.5831 -6.2641 0.9153 16 6 2.8501 -7.3032 1.7311 17 8 1.9401 -7.9791 2.1728 18 6 4.2406 -7.6197 2.0870 19 6 4.6208 -8.5426 3.0084 20 6 6.0813 -8.5157 3.0291 21 6 7.0716 -9.1993 3.7338 22 7 8.3420 -8.9334 3.5123 23 6 8.7278 -8.0259 2.6301 24 6 7.8160 -7.3056 1.8902 25 6 6.4570 -7.5420 2.0798 26 8 5.3327 -7.0419 1.5421 27 6 3.6667 -5.3662 0.5050 28 6 3.2477 -3.8955 0.6836 29 6 1.9078 -3.7212 -0.0005 30 1 1.9816 -4.0717 -1.0299 31 1 -0.4850 0.8400 0.0004 32 1 -0.5653 -2.1735 -0.9321 33 1 -0.5807 -2.0216 0.8480 34 1 -0.5957 -4.5237 -0.8519 35 1 -1.2851 -4.2571 0.7838 36 1 0.5147 -6.7050 0.9685 37 1 1.1406 -6.2119 -0.6313 38 1 3.9742 -9.1693 3.6049 39 1 6.7961 -9.9476 4.4621 40 1 9.7829 -7.8455 2.4867 41 1 8.1500 -6.5685 1.1750 42 1 4.5485 -5.5651 1.1140 43 1 3.9061 -5.5469 -0.5430 44 1 3.1549 -3.6628 1.7445 45 1 3.9873 -3.2408 0.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036760512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = 35.416180 kcal Electronic energy + Delta-G solvation = -29639.591934 eV Core-core repulsion = 25624.215351 eV Total energy + Delta-G solvation = -4015.376584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.91144 -41.50532 -40.08423 -39.65601 -36.99856 -34.60387 -34.11243 -33.13842 -32.81784 -31.71300 -30.81981 -29.70538 -26.87875 -26.25819 -24.91124 -24.18859 -23.82067 -22.84094 -21.93928 -21.56241 -20.84071 -19.39794 -18.91468 -18.25094 -17.83354 -17.35211 -17.02061 -16.73152 -16.51631 -16.31573 -15.97911 -15.68405 -15.52877 -15.26747 -14.85349 -14.74764 -14.50988 -14.40387 -14.28886 -14.09956 -13.82093 -13.35075 -13.11745 -13.11082 -12.72026 -12.66098 -12.43311 -12.16223 -12.02313 -11.84344 -11.62582 -11.58459 -11.49831 -11.38729 -11.02733 -10.76566 -10.71440 -10.52207 -9.95708 -9.46677 -8.88267 -7.84098 -5.18483 -0.68519 0.13481 0.59984 1.11235 1.45503 1.46906 1.55140 1.73924 1.91874 2.49835 2.68979 2.99238 3.31209 3.34814 3.41367 3.46624 3.72343 3.75303 3.77132 3.86264 3.95923 4.06857 4.15791 4.21099 4.30308 4.36731 4.44813 4.59049 4.63598 4.64854 4.68255 4.74190 4.75838 4.83907 4.91771 5.01116 5.04387 5.06994 5.14843 5.30950 5.37771 5.49707 5.51063 5.65516 5.71413 5.76467 6.09881 6.20170 6.73238 6.86218 7.08867 7.78869 8.47283 9.27767 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002887 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.971114 B = 9695.405094 C =11250.021153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.230 4.230 8 H 0.087 0.913 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.110 4.110 13 H 0.063 0.937 14 C 0.134 3.866 15 N -0.596 5.596 16 C 0.595 3.405 17 O -0.546 6.546 18 C -0.045 4.045 19 C -0.082 4.082 20 C -0.214 4.214 21 C 0.177 3.823 22 N -0.513 5.513 23 C 0.121 3.879 24 C -0.163 4.163 25 C 0.079 3.921 26 O -0.175 6.175 27 C 0.112 3.888 28 C -0.120 4.120 29 C 0.157 3.843 30 H 0.027 0.973 31 H 0.245 0.755 32 H 0.006 0.994 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.191 0.809 39 H 0.192 0.808 40 H 0.202 0.798 41 H 0.170 0.830 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.576 -19.589 3.678 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.359 4.359 8 H 0.104 0.896 9 N -0.341 5.341 10 C 0.056 3.944 11 C -0.158 4.158 12 C -0.131 4.131 13 H 0.081 0.919 14 C 0.013 3.987 15 N -0.326 5.326 16 C 0.383 3.617 17 O -0.426 6.426 18 C -0.094 4.094 19 C -0.104 4.104 20 C -0.217 4.217 21 C 0.013 3.987 22 N -0.223 5.223 23 C -0.028 4.028 24 C -0.183 4.183 25 C 0.024 3.976 26 O -0.077 6.077 27 C -0.010 4.010 28 C -0.159 4.159 29 C 0.050 3.950 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.208 0.792 39 H 0.209 0.791 40 H 0.219 0.781 41 H 0.187 0.813 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.722 -19.873 4.069 25.065 hybrid contribution -0.808 2.035 -0.490 2.244 sum 13.914 -17.838 3.579 22.904 Atomic orbital electron populations 1.70159 1.06336 1.25100 1.58745 1.25618 0.96524 1.00955 1.03150 0.85142 0.77735 0.79475 0.77411 1.21372 1.22547 1.19196 1.19400 0.91010 0.83420 1.42058 0.89554 1.44526 1.02295 1.00781 1.86469 1.21336 0.83620 0.91765 0.97664 1.22583 0.96708 0.95373 1.01177 1.22467 0.96739 0.94573 0.99305 0.91871 1.21690 0.81009 0.95323 1.00707 1.48288 1.10721 1.26834 1.46765 1.16977 0.85099 0.80964 0.78622 1.90848 1.44493 1.52463 1.54780 1.21891 0.86078 1.00252 1.01194 1.22944 0.92807 0.97342 0.97284 1.21089 0.94659 1.02808 1.03176 1.22902 0.85802 0.95215 0.94794 1.67906 1.18156 1.17740 1.18502 1.23226 1.01501 0.89072 0.88985 1.21443 0.86505 1.05155 1.05215 1.20536 0.89014 0.94115 0.93910 1.84233 1.12371 1.54917 1.56139 1.22186 0.88747 0.87767 1.02316 1.21775 0.98002 0.95557 1.00582 1.20864 0.92917 0.85259 0.95916 0.95573 0.94592 0.97583 0.96553 0.89975 0.90209 0.88344 0.88790 0.79215 0.79107 0.78148 0.81252 0.87209 0.89504 0.93019 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.44 21.65 0.23 -57.27 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.23 -12.50 9.88 84.03 0.83 -11.67 16 8 H 0.09 4.42 7.21 -2.91 -0.02 4.40 16 9 N -0.62 -30.68 3.35 -669.84 -2.25 -32.93 16 10 C 0.18 8.84 5.45 86.83 0.47 9.31 16 11 C -0.12 -4.23 6.53 31.63 0.21 -4.02 16 12 C -0.11 -3.72 2.85 -10.00 -0.03 -3.75 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 3.64 5.97 85.89 0.51 4.15 16 15 N -0.60 -16.10 3.00 -822.37 -2.47 -18.57 16 16 C 0.60 16.46 7.63 86.53 0.66 17.12 16 17 O -0.55 -17.38 16.20 -4.22 -0.07 -17.45 16 18 C -0.05 -1.07 6.68 24.01 0.16 -0.91 16 19 C -0.08 -1.62 10.81 23.75 0.26 -1.36 16 20 C -0.21 -3.95 6.43 -20.25 -0.13 -4.08 16 21 C 0.18 2.67 11.27 85.01 0.96 3.63 16 22 N -0.51 -8.28 10.34 -195.05 -2.02 -10.30 16 23 C 0.12 1.51 11.13 84.51 0.94 2.45 16 24 C -0.16 -2.28 10.13 22.40 0.23 -2.05 16 25 C 0.08 1.54 7.48 23.21 0.17 1.71 16 26 O -0.18 -3.87 7.06 -9.70 -0.07 -3.94 16 27 C 0.11 2.83 5.86 86.69 0.51 3.34 16 28 C -0.12 -3.92 5.48 30.41 0.17 -3.75 16 29 C 0.16 6.02 2.55 45.48 0.12 6.13 16 30 H 0.03 1.01 7.94 -2.39 -0.02 0.99 16 31 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.01 0.32 7.77 -2.38 -0.02 0.30 16 33 H 0.02 0.90 7.22 -2.39 -0.02 0.89 16 34 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.10 2.66 6.98 -2.39 -0.02 2.64 16 37 H 0.09 2.24 8.08 -2.38 -0.02 2.22 16 38 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.11 2.60 4.30 -24.09 -0.10 2.50 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 45 H 0.08 2.54 7.62 -2.39 -0.02 2.52 16 Total: -1.00 -71.50 361.23 2.81 -68.69 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.93 Total: 11.53 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.50 Total: 12.78 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -6.50 Total: -119.06 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.14 Total: -21.39 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.50 2.81 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.111 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds