Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48505 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47155 * 239.99984 * 3 2 1 6 6 H 1.48508 * 109.47137 * 119.99881 * 3 2 1 7 7 C 1.38803 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00297 * 145.13307 * 7 2 1 9 9 N 1.36942 * 119.99960 * 325.12978 * 7 2 1 10 10 C 1.46869 * 125.33774 * 359.54907 * 9 7 2 11 11 C 1.54463 * 106.66610 * 195.32879 * 10 9 7 12 12 C 1.53393 * 102.53452 * 332.27342 * 11 10 9 13 13 H 1.08999 * 105.69427 * 277.66259 * 12 11 10 14 14 C 1.49268 * 114.27888 * 161.97476 * 12 11 10 15 15 N 1.45269 * 114.71582 * 258.58224 * 14 12 11 16 16 C 1.34771 * 120.15507 * 143.67261 * 15 14 12 17 17 O 1.21661 * 120.00045 * 177.49016 * 16 15 14 18 18 C 1.46978 * 120.00285 * 357.48986 * 16 15 14 19 19 C 1.35842 * 125.12599 * 187.27975 * 18 16 15 20 20 C 1.46097 * 106.07164 * 179.85902 * 19 18 16 21 21 C 1.39447 * 135.07489 * 180.14107 * 20 19 18 22 22 N 1.31678 * 120.07747 * 180.30291 * 21 20 19 23 23 C 1.32305 * 122.13951 * 359.97438 * 22 21 20 24 24 C 1.37751 * 121.58497 * 359.97438 * 23 22 21 25 25 C 1.39243 * 118.95750 * 0.02562 * 24 23 22 26 26 O 1.34279 * 134.38225 * 180.02562 * 25 24 23 27 27 C 1.46826 * 119.53778 * 323.91171 * 15 14 12 28 28 C 1.52964 * 107.40449 * 54.77252 * 27 15 14 29 29 C 1.48010 * 125.34034 * 179.23709 * 9 7 2 30 30 H 1.09005 * 110.22822 * 303.31606 * 29 9 7 31 31 H 0.96994 * 120.00089 * 174.62635 * 1 2 3 32 32 H 1.08996 * 110.01451 * 314.63218 * 10 9 7 33 33 H 1.09000 * 110.01891 * 75.97805 * 10 9 7 34 34 H 1.09002 * 110.79664 * 90.52765 * 11 10 9 35 35 H 1.09001 * 110.79660 * 214.01309 * 11 10 9 36 36 H 1.08996 * 108.44714 * 20.47606 * 14 12 11 37 37 H 1.09003 * 108.44919 * 137.79715 * 14 12 11 38 38 H 1.08000 * 126.95959 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.96678 * 0.32295 * 21 20 19 40 40 H 1.08003 * 119.20941 * 180.02562 * 23 22 21 41 41 H 1.08008 * 120.52511 * 179.97438 * 24 23 22 42 42 H 1.08990 * 109.87716 * 295.29150 * 27 15 14 43 43 H 1.09003 * 109.92760 * 174.27010 * 27 15 14 44 44 H 1.08998 * 109.38651 * 178.38289 * 28 27 15 45 45 H 1.09000 * 109.38703 * 58.69889 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 2.9448 -1.2863 -0.5341 9 7 1.5100 -2.2812 0.6791 10 6 0.2599 -2.2950 1.4499 11 6 0.3011 -3.5581 2.3381 12 6 1.1900 -4.5078 1.5253 13 1 0.5341 -4.9625 0.7829 14 6 1.7548 -5.6437 2.3120 15 7 3.1413 -5.4758 2.7115 16 6 3.5608 -5.9308 3.9087 17 8 4.7321 -5.8297 4.2215 18 6 2.6032 -6.5491 4.8366 19 6 2.8785 -6.9138 6.1158 20 6 1.6410 -7.4762 6.6513 21 6 1.2521 -8.0200 7.8751 22 7 0.0216 -8.4585 8.0412 23 6 -0.8815 -8.4036 7.0758 24 6 -0.5823 -7.8811 5.8368 25 6 0.7032 -7.4012 5.6001 26 8 1.3181 -6.8441 4.5443 27 6 4.0796 -4.8029 1.8044 28 6 3.4826 -3.4376 1.4591 29 6 2.1409 -3.6185 0.7453 30 1 2.2908 -4.0146 -0.2591 31 1 -0.4850 -0.8363 -0.0787 32 1 0.1957 -1.4028 2.0726 33 1 -0.5945 -2.3406 0.7745 34 1 0.7537 -3.3368 3.3047 35 1 -0.6979 -3.9756 2.4637 36 1 1.1453 -5.7815 3.2051 37 1 1.6856 -6.5491 1.7089 38 1 3.8205 -6.8069 6.6331 39 1 1.9607 -8.0814 8.6878 40 1 -1.8774 -8.7766 7.2639 41 1 -1.3327 -7.8451 5.0609 42 1 4.2048 -5.3928 0.8966 43 1 5.0431 -4.6720 2.2969 44 1 4.1690 -2.8969 0.8076 45 1 3.3307 -2.8669 2.3753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 54.501072 kcal Electronic energy + Delta-G solvation = -30034.184025 eV Core-core repulsion = 26019.635025 eV Total energy + Delta-G solvation = -4014.549001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.12901 -40.42277 -39.27290 -38.53633 -35.74696 -33.35129 -32.97189 -32.50889 -31.84524 -30.30553 -29.54768 -28.45929 -25.77026 -24.69233 -23.98102 -23.51875 -22.82563 -21.92519 -20.70253 -20.29321 -18.85211 -18.57686 -17.76684 -17.56561 -16.97108 -16.46682 -16.04812 -15.75340 -15.34058 -14.89440 -14.83619 -14.56165 -14.37194 -13.80532 -13.78027 -13.75561 -13.66878 -13.19950 -13.11716 -13.05228 -12.46209 -12.08886 -12.00138 -11.73922 -11.54114 -11.10239 -10.75508 -10.68337 -10.52922 -10.43697 -10.41436 -10.11891 -10.01762 -9.96790 -9.81714 -9.75590 -9.65305 -8.92926 -8.62069 -8.31948 -7.04113 -6.18040 -3.07076 0.06986 0.84767 1.40037 1.94991 2.76206 2.92536 3.34644 3.48906 3.55245 3.71645 3.85516 3.98152 4.09695 4.46046 4.51250 4.53952 4.64355 4.79309 4.96572 4.97358 5.01877 5.15972 5.24474 5.26592 5.35256 5.38268 5.42225 5.58736 5.67426 5.70009 5.73274 5.74546 5.91232 5.96110 6.00546 6.06216 6.20848 6.25838 6.36692 6.44043 6.53112 6.73333 6.89071 6.96741 7.05369 7.18594 7.50221 7.73861 7.80526 8.45217 8.95410 9.79918 10.32260 11.16367 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002970 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.148343 B = 9424.962224 C =10232.319175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.050 2.950 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.345 4.345 8 H 0.071 0.929 9 N -0.599 5.599 10 C 0.145 3.855 11 C -0.125 4.125 12 C -0.107 4.107 13 H 0.068 0.932 14 C 0.117 3.883 15 N -0.584 5.584 16 C 0.594 3.406 17 O -0.519 6.519 18 C -0.018 4.018 19 C -0.100 4.100 20 C -0.198 4.198 21 C 0.174 3.826 22 N -0.494 5.494 23 C 0.116 3.884 24 C -0.159 4.159 25 C 0.095 3.905 26 O -0.168 6.168 27 C 0.110 3.890 28 C -0.137 4.137 29 C 0.176 3.824 30 H 0.042 0.958 31 H 0.270 0.730 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.176 0.824 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.148 0.852 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -18.337 11.660 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.220 4.220 3 Si 0.880 3.120 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.471 4.471 8 H 0.089 0.911 9 N -0.325 5.325 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.006 4.006 15 N -0.315 5.315 16 C 0.381 3.619 17 O -0.397 6.397 18 C -0.067 4.067 19 C -0.122 4.122 20 C -0.201 4.201 21 C 0.010 3.990 22 N -0.204 5.204 23 C -0.034 4.034 24 C -0.179 4.179 25 C 0.040 3.960 26 O -0.069 6.069 27 C -0.011 4.011 28 C -0.177 4.177 29 C 0.069 3.931 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.193 0.807 39 H 0.184 0.816 40 H 0.187 0.813 41 H 0.165 0.835 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.714 -16.812 12.238 20.807 hybrid contribution 0.284 -1.249 -1.032 1.645 sum 0.998 -18.061 11.207 21.279 Atomic orbital electron populations 1.70820 1.06983 1.30288 1.47039 1.25577 0.96128 1.00551 0.99793 0.83738 0.75299 0.76731 0.76242 1.21201 1.22056 1.22191 1.19642 1.05876 0.89397 1.32226 0.91071 1.44795 1.22805 1.06828 1.58033 1.21313 0.89511 0.94660 0.92573 1.22476 0.98150 0.96950 0.98781 1.20736 0.98387 0.95489 0.98080 0.91337 1.20929 0.81151 0.97767 1.00753 1.47643 1.11266 1.56252 1.16333 1.16764 0.85975 0.78660 0.80550 1.90875 1.15535 1.57956 1.75370 1.22228 0.82585 1.05341 0.96526 1.22661 0.98251 0.98471 0.92785 1.20955 0.94788 1.07090 0.97290 1.22467 0.92634 0.90075 0.93854 1.67813 1.01937 1.17681 1.33017 1.22630 0.99074 0.94348 0.87320 1.21096 0.93107 1.03483 1.00261 1.20104 0.94672 0.95105 0.86122 1.84350 1.22298 1.64453 1.35755 1.21853 0.92882 0.93974 0.92423 1.22371 0.98959 0.94352 1.02009 1.20384 0.90946 0.86513 0.95254 0.94015 0.91832 0.93456 0.95830 0.92197 0.91555 0.88243 0.91907 0.80661 0.81634 0.81344 0.83467 0.90987 0.88859 0.90600 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.05 12.74 55.49 0.71 -26.34 16 2 C -0.02 -0.52 5.04 -17.43 -0.09 -0.61 16 3 Si 1.05 25.11 30.03 -169.99 -5.11 20.01 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.34 -9.39 9.57 -15.06 -0.14 -9.53 16 8 H 0.07 1.93 8.02 -52.49 -0.42 1.51 16 9 N -0.60 -14.45 3.04 -164.00 -0.50 -14.95 16 10 C 0.15 3.28 5.28 -3.07 -0.02 3.27 16 11 C -0.13 -2.16 6.37 -25.76 -0.16 -2.32 16 12 C -0.11 -1.70 2.45 -92.87 -0.23 -1.93 16 13 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 14 C 0.12 1.55 5.50 -6.54 -0.04 1.51 16 15 N -0.58 -8.35 2.99 -178.07 -0.53 -8.89 16 16 C 0.59 8.68 7.65 -12.72 -0.10 8.58 16 17 O -0.52 -8.63 16.23 5.22 0.08 -8.55 16 18 C -0.02 -0.22 6.74 -36.90 -0.25 -0.47 16 19 C -0.10 -1.09 10.81 -37.29 -0.40 -1.49 16 20 C -0.20 -2.06 6.43 -105.22 -0.68 -2.74 16 21 C 0.17 1.56 11.28 -17.17 -0.19 1.36 16 22 N -0.49 -4.74 10.34 -13.00 -0.13 -4.88 16 23 C 0.12 0.92 11.13 -17.53 -0.20 0.72 16 24 C -0.16 -1.35 10.13 -39.39 -0.40 -1.74 16 25 C 0.10 1.03 7.48 -38.13 -0.29 0.75 16 26 O -0.17 -2.01 6.98 3.69 0.03 -1.98 16 27 C 0.11 1.59 6.43 -3.88 -0.02 1.57 16 28 C -0.14 -2.41 5.18 -26.72 -0.14 -2.55 16 29 C 0.18 3.38 3.41 -67.69 -0.23 3.15 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 7.97 5.84 -40.82 -0.24 7.73 16 32 H 0.05 1.20 7.65 -51.93 -0.40 0.81 16 33 H 0.02 0.58 6.67 -51.93 -0.35 0.23 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.28 4.00 -53.51 -0.21 1.07 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.17 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 44 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -32.71 360.99 -9.43 -42.13 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.84 Total: 0.47 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.57 Total: -2.47 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.46 Total: -55.05 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.11 Total: -10.53 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.11 Total: 20.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.71 -9.43 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.635 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds