Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48505 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47155 * 239.99984 * 3 2 1 6 6 H 1.48508 * 109.47137 * 119.99881 * 3 2 1 7 7 C 1.38803 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00297 * 145.13307 * 7 2 1 9 9 N 1.36942 * 119.99960 * 325.12978 * 7 2 1 10 10 C 1.46869 * 125.33774 * 359.54907 * 9 7 2 11 11 C 1.54463 * 106.66610 * 195.32879 * 10 9 7 12 12 C 1.53393 * 102.53452 * 332.27342 * 11 10 9 13 13 H 1.08999 * 105.69427 * 277.66259 * 12 11 10 14 14 C 1.49268 * 114.27888 * 161.97476 * 12 11 10 15 15 N 1.45269 * 114.71582 * 258.58224 * 14 12 11 16 16 C 1.34771 * 120.15507 * 143.67261 * 15 14 12 17 17 O 1.21661 * 120.00045 * 177.49016 * 16 15 14 18 18 C 1.46978 * 120.00285 * 357.48986 * 16 15 14 19 19 C 1.35842 * 125.12599 * 187.27975 * 18 16 15 20 20 C 1.46097 * 106.07164 * 179.85902 * 19 18 16 21 21 C 1.39447 * 135.07489 * 180.14107 * 20 19 18 22 22 N 1.31678 * 120.07747 * 180.30291 * 21 20 19 23 23 C 1.32305 * 122.13951 * 359.97438 * 22 21 20 24 24 C 1.37751 * 121.58497 * 359.97438 * 23 22 21 25 25 C 1.39243 * 118.95750 * 0.02562 * 24 23 22 26 26 O 1.34279 * 134.38225 * 180.02562 * 25 24 23 27 27 C 1.46826 * 119.53778 * 323.91171 * 15 14 12 28 28 C 1.52964 * 107.40449 * 54.77252 * 27 15 14 29 29 C 1.48010 * 125.34034 * 179.23709 * 9 7 2 30 30 H 1.09005 * 110.22822 * 303.31606 * 29 9 7 31 31 H 0.96994 * 120.00089 * 174.62635 * 1 2 3 32 32 H 1.08996 * 110.01451 * 314.63218 * 10 9 7 33 33 H 1.09000 * 110.01891 * 75.97805 * 10 9 7 34 34 H 1.09002 * 110.79664 * 90.52765 * 11 10 9 35 35 H 1.09001 * 110.79660 * 214.01309 * 11 10 9 36 36 H 1.08996 * 108.44714 * 20.47606 * 14 12 11 37 37 H 1.09003 * 108.44919 * 137.79715 * 14 12 11 38 38 H 1.08000 * 126.95959 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.96678 * 0.32295 * 21 20 19 40 40 H 1.08003 * 119.20941 * 180.02562 * 23 22 21 41 41 H 1.08008 * 120.52511 * 179.97438 * 24 23 22 42 42 H 1.08990 * 109.87716 * 295.29150 * 27 15 14 43 43 H 1.09003 * 109.92760 * 174.27010 * 27 15 14 44 44 H 1.08998 * 109.38651 * 178.38289 * 28 27 15 45 45 H 1.09000 * 109.38703 * 58.69889 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 2.9448 -1.2863 -0.5341 9 7 1.5100 -2.2812 0.6791 10 6 0.2599 -2.2950 1.4499 11 6 0.3011 -3.5581 2.3381 12 6 1.1900 -4.5078 1.5253 13 1 0.5341 -4.9625 0.7829 14 6 1.7548 -5.6437 2.3120 15 7 3.1413 -5.4758 2.7115 16 6 3.5608 -5.9308 3.9087 17 8 4.7321 -5.8297 4.2215 18 6 2.6032 -6.5491 4.8366 19 6 2.8785 -6.9138 6.1158 20 6 1.6410 -7.4762 6.6513 21 6 1.2521 -8.0200 7.8751 22 7 0.0216 -8.4585 8.0412 23 6 -0.8815 -8.4036 7.0758 24 6 -0.5823 -7.8811 5.8368 25 6 0.7032 -7.4012 5.6001 26 8 1.3181 -6.8441 4.5443 27 6 4.0796 -4.8029 1.8044 28 6 3.4826 -3.4376 1.4591 29 6 2.1409 -3.6185 0.7453 30 1 2.2908 -4.0146 -0.2591 31 1 -0.4850 -0.8363 -0.0787 32 1 0.1957 -1.4028 2.0726 33 1 -0.5945 -2.3406 0.7745 34 1 0.7537 -3.3368 3.3047 35 1 -0.6979 -3.9756 2.4637 36 1 1.1453 -5.7815 3.2051 37 1 1.6856 -6.5491 1.7089 38 1 3.8205 -6.8069 6.6331 39 1 1.9607 -8.0814 8.6878 40 1 -1.8774 -8.7766 7.2639 41 1 -1.3327 -7.8451 5.0609 42 1 4.2048 -5.3928 0.8966 43 1 5.0431 -4.6720 2.2969 44 1 4.1690 -2.8969 0.8076 45 1 3.3307 -2.8669 2.3753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036760513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 34.725978 kcal Electronic energy + Delta-G solvation = -30035.041538 eV Core-core repulsion = 26019.635025 eV Total energy + Delta-G solvation = -4015.406513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.92384 -41.59896 -40.13040 -39.78656 -37.17535 -34.75670 -34.12269 -33.77135 -32.69441 -31.53251 -30.82827 -29.97513 -27.03726 -26.03033 -25.39281 -24.42036 -23.92975 -22.81680 -22.12751 -21.72081 -20.06225 -19.66654 -19.38345 -18.73296 -17.84767 -17.53878 -16.84615 -16.70824 -16.44286 -16.36514 -16.16189 -15.60391 -15.52854 -15.40810 -15.03949 -14.71673 -14.55872 -14.47259 -14.37433 -14.33983 -13.98414 -13.55115 -13.25096 -13.12312 -12.63187 -12.55460 -12.47248 -12.25164 -11.99179 -11.92769 -11.71450 -11.65575 -11.51293 -11.37541 -11.21309 -10.76875 -10.53341 -10.44774 -9.93174 -9.46327 -9.04702 -8.37893 -5.21206 -0.69393 0.13402 0.59012 1.09753 1.54515 1.62190 1.72862 1.80677 1.90782 2.60758 2.68693 2.98679 3.11187 3.29565 3.35519 3.43380 3.55237 3.68716 3.75607 3.77682 3.82820 4.01177 4.06376 4.17547 4.29909 4.30571 4.34334 4.39049 4.55277 4.57242 4.61607 4.66847 4.72723 4.77256 4.86155 4.97327 4.99490 5.00768 5.03464 5.15717 5.26542 5.31858 5.40720 5.44941 5.69328 5.71134 6.09289 6.31872 6.71234 6.85957 6.88010 7.73481 8.29252 8.97744 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002970 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.148343 B = 9424.962224 C =10232.319175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.075 4.075 3 Si 1.101 2.899 4 H -0.294 1.294 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.344 4.344 8 H 0.067 0.933 9 N -0.620 5.620 10 C 0.148 3.852 11 C -0.110 4.110 12 C -0.097 4.097 13 H 0.082 0.918 14 C 0.122 3.878 15 N -0.589 5.589 16 C 0.596 3.404 17 O -0.547 6.547 18 C -0.045 4.045 19 C -0.083 4.083 20 C -0.214 4.214 21 C 0.176 3.824 22 N -0.513 5.513 23 C 0.121 3.879 24 C -0.162 4.162 25 C 0.080 3.920 26 O -0.173 6.173 27 C 0.121 3.879 28 C -0.124 4.124 29 C 0.169 3.831 30 H 0.042 0.958 31 H 0.258 0.742 32 H 0.007 0.993 33 H 0.004 0.996 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.202 0.798 41 H 0.171 0.829 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -20.710 12.878 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.271 4.271 3 Si 0.926 3.074 4 H -0.220 1.220 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.472 4.472 8 H 0.085 0.915 9 N -0.346 5.346 10 C 0.022 3.978 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.101 0.899 14 C 0.000 4.000 15 N -0.318 5.318 16 C 0.384 3.616 17 O -0.427 6.427 18 C -0.094 4.094 19 C -0.105 4.105 20 C -0.218 4.218 21 C 0.012 3.988 22 N -0.223 5.223 23 C -0.028 4.028 24 C -0.182 4.182 25 C 0.025 3.975 26 O -0.075 6.075 27 C -0.001 4.001 28 C -0.164 4.164 29 C 0.063 3.937 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.208 0.792 40 H 0.219 0.781 41 H 0.189 0.811 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.596 -19.228 13.456 23.476 hybrid contribution 0.268 -0.599 -1.333 1.486 sum 0.864 -19.826 12.123 23.255 Atomic orbital electron populations 1.70918 1.07870 1.29615 1.50175 1.26796 0.96303 1.03806 1.00218 0.83040 0.74240 0.72939 0.77169 1.22012 1.19910 1.21437 1.19873 1.05259 0.90710 1.31371 0.91468 1.45074 1.23623 1.08299 1.57618 1.21201 0.88455 0.95813 0.92315 1.22380 1.00388 0.94572 0.97445 1.20672 0.97528 0.95282 0.98155 0.89933 1.20943 0.80645 0.97181 1.01267 1.47676 1.11558 1.56217 1.16398 1.16929 0.86001 0.78222 0.80468 1.90851 1.16781 1.59221 1.75886 1.21861 0.83089 1.07645 0.96794 1.22932 0.98930 0.96407 0.92183 1.21079 0.94532 1.08129 0.98016 1.22894 0.92988 0.88902 0.93980 1.67905 1.02381 1.18222 1.33797 1.23232 1.00037 0.92897 0.86657 1.21445 0.92694 1.02939 1.01139 1.20540 0.95670 0.95338 0.85942 1.84239 1.21909 1.65033 1.36300 1.21715 0.92610 0.92289 0.93501 1.22145 0.98100 0.96067 1.00122 1.20640 0.92059 0.84924 0.96057 0.94060 0.93100 0.97461 0.97822 0.92451 0.88372 0.87257 0.89226 0.79347 0.79191 0.78144 0.81138 0.88659 0.88899 0.91748 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 12.74 21.65 0.28 -57.84 16 2 C -0.07 -4.32 5.04 84.86 0.43 -3.89 16 3 Si 1.10 51.91 30.03 68.60 2.06 53.97 16 4 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.34 -19.23 9.57 84.03 0.80 -18.43 16 8 H 0.07 3.72 8.02 -2.91 -0.02 3.70 16 9 N -0.62 -30.68 3.04 -672.77 -2.05 -32.72 16 10 C 0.15 6.92 5.28 86.81 0.46 7.38 16 11 C -0.11 -3.68 6.37 31.22 0.20 -3.49 16 12 C -0.10 -2.91 2.45 -12.25 -0.03 -2.94 16 13 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 14 C 0.12 2.92 5.50 85.42 0.47 3.39 16 15 N -0.59 -15.86 2.99 -835.53 -2.50 -18.36 16 16 C 0.60 16.69 7.65 86.53 0.66 17.35 16 17 O -0.55 -17.82 16.23 -4.22 -0.07 -17.89 16 18 C -0.05 -1.08 6.74 24.01 0.16 -0.92 16 19 C -0.08 -1.67 10.81 23.75 0.26 -1.41 16 20 C -0.21 -4.01 6.43 -20.25 -0.13 -4.14 16 21 C 0.18 2.72 11.28 85.01 0.96 3.68 16 22 N -0.51 -8.40 10.34 -195.04 -2.02 -10.41 16 23 C 0.12 1.52 11.13 84.51 0.94 2.46 16 24 C -0.16 -2.24 10.13 22.40 0.23 -2.01 16 25 C 0.08 1.55 7.48 23.21 0.17 1.72 16 26 O -0.17 -3.78 6.98 -9.72 -0.07 -3.85 16 27 C 0.12 3.34 6.43 86.31 0.55 3.90 16 28 C -0.12 -4.39 5.18 30.60 0.16 -4.23 16 29 C 0.17 6.43 3.41 44.32 0.15 6.58 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.26 15.99 5.84 -92.71 -0.54 15.44 16 32 H 0.01 0.38 7.65 -2.39 -0.02 0.36 16 33 H 0.00 0.21 6.67 -2.39 -0.02 0.19 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.11 2.52 4.00 -27.37 -0.11 2.41 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.09 2.62 7.00 -2.39 -0.02 2.61 16 44 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.90 360.99 3.23 -70.67 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.15 Total: 11.41 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.44 Total: 5.01 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -6.29 Total: -119.33 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.14 Total: -21.73 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.97 kcal Total: -73.90 3.23 -70.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.399 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds