Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48499 * 109.47350 * 274.97668 * 3 2 1 5 5 H 1.48508 * 109.47029 * 34.97676 * 3 2 1 6 6 H 1.48501 * 109.47496 * 154.97451 * 3 2 1 7 7 C 1.38818 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00265 * 189.17982 * 7 2 1 9 9 N 1.36939 * 119.99763 * 9.17698 * 7 2 1 10 10 C 1.48159 * 126.40162 * 357.00962 * 9 7 2 11 11 C 1.55292 * 107.03991 * 175.07452 * 10 9 7 12 12 C 1.53743 * 101.84207 * 337.52094 * 11 10 9 13 13 H 1.08992 * 111.31318 * 280.14860 * 12 11 10 14 14 C 1.52242 * 114.73930 * 152.74805 * 12 11 10 15 15 N 1.47720 * 106.36854 * 190.43205 * 14 12 11 16 16 C 1.34776 * 119.68194 * 232.04004 * 15 14 12 17 17 O 1.21657 * 120.00007 * 172.12654 * 16 15 14 18 18 C 1.46985 * 120.00278 * 352.12691 * 16 15 14 19 19 C 1.35839 * 125.12502 * 172.29831 * 18 16 15 20 20 C 1.46097 * 106.07210 * 179.89440 * 19 18 16 21 21 C 1.39451 * 135.07740 * 180.13113 * 20 19 18 22 22 N 1.31672 * 120.07614 * 180.26838 * 21 20 19 23 23 C 1.32310 * 122.14287 * 359.97438 * 22 21 20 24 24 C 1.37751 * 121.57965 * 359.97438 * 23 22 21 25 25 C 1.39240 * 118.96189 * 0.02562 * 24 23 22 26 26 O 1.34280 * 134.38225 * 180.02562 * 25 24 23 27 27 C 1.46593 * 120.63599 * 52.05654 * 15 14 12 28 28 C 1.53959 * 110.57267 * 312.17880 * 27 15 14 29 29 C 1.45459 * 126.40395 * 176.69654 * 9 7 2 30 30 H 1.09002 * 109.26518 * 93.80777 * 29 9 7 31 31 H 0.97003 * 120.00311 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.92342 * 294.41985 * 10 9 7 33 33 H 1.08997 * 109.92280 * 55.72758 * 10 9 7 34 34 H 1.08999 * 110.95605 * 95.65766 * 11 10 9 35 35 H 1.09003 * 110.95467 * 219.38031 * 11 10 9 36 36 H 1.09000 * 110.07307 * 309.64284 * 14 12 11 37 37 H 1.09008 * 110.06748 * 71.21878 * 14 12 11 38 38 H 1.08008 * 126.96624 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.95838 * 0.27491 * 21 20 19 40 40 H 1.07995 * 119.20516 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.51677 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.25487 * 72.46262 * 27 15 14 43 43 H 1.08995 * 109.25603 * 191.93163 * 27 15 14 44 44 H 1.08999 * 109.88034 * 170.51030 * 28 27 15 45 45 H 1.08995 * 109.88533 * 291.51713 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6201 0.8026 6 1 3.5963 1.4122 0.5923 7 6 2.0103 -1.2021 -0.0005 8 1 3.0798 -1.2082 0.1487 9 7 1.3388 -2.3804 -0.1902 10 6 -0.1257 -2.5427 -0.3453 11 6 -0.3868 -4.0409 -0.6595 12 6 0.9733 -4.4874 -1.2201 13 1 1.0884 -4.1915 -2.2628 14 6 1.2873 -5.9647 -1.0289 15 7 2.7088 -6.1385 -1.3913 16 6 3.0590 -7.0855 -2.2840 17 8 4.2028 -7.1410 -2.6948 18 6 2.0591 -8.0514 -2.7611 19 6 2.2547 -8.9487 -3.7621 20 6 1.0040 -9.6932 -3.8880 21 6 0.5498 -10.7302 -4.7022 22 7 -0.6761 -11.1900 -4.5630 23 6 -1.5138 -10.7000 -3.6636 24 6 -1.1468 -9.6762 -2.8183 25 6 0.1376 -9.1476 -2.9174 26 8 0.8064 -8.1777 -2.2731 27 6 3.7422 -5.2910 -0.7890 28 6 3.3292 -3.8090 -0.8490 29 6 1.9305 -3.7059 -0.2834 30 1 1.9240 -4.1728 0.7015 31 1 -0.4851 0.8400 0.0004 32 1 -0.6304 -2.2639 0.5798 33 1 -0.4831 -1.9230 -1.1677 34 1 -0.6345 -4.5921 0.2477 35 1 -1.1721 -4.1512 -1.4075 36 1 1.1292 -6.2492 0.0114 37 1 0.6581 -6.5686 -1.6828 38 1 3.1535 -9.0856 -4.3452 39 1 1.2045 -11.1567 -5.4478 40 1 -2.5088 -11.1133 -3.5901 41 1 -1.8447 -9.2889 -2.0907 42 1 3.8850 -5.5826 0.2515 43 1 4.6781 -5.4250 -1.3314 44 1 4.0174 -3.2081 -0.2545 45 1 3.3345 -3.4642 -1.8829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 54.498401 kcal Electronic energy + Delta-G solvation = -29766.926893 eV Core-core repulsion = 25752.377777 eV Total energy + Delta-G solvation = -4014.549116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.11033 -40.33718 -39.25411 -38.42405 -35.50696 -33.33389 -32.66684 -32.43187 -31.77921 -30.25146 -29.57140 -28.20415 -25.71419 -24.69949 -23.96260 -23.28763 -22.59241 -21.77838 -20.55190 -20.09511 -19.53157 -18.52077 -17.84725 -16.96240 -16.71933 -16.28255 -15.86983 -15.70502 -15.21567 -15.00370 -14.86672 -14.47070 -14.37312 -13.90849 -13.77231 -13.74119 -13.55019 -13.30603 -13.07490 -12.63458 -12.33654 -11.99952 -11.75910 -11.56243 -11.44028 -10.90820 -10.82727 -10.73716 -10.71839 -10.50707 -10.16332 -10.11747 -10.10596 -9.94773 -9.79934 -9.68691 -9.52640 -8.90168 -8.63925 -8.60138 -6.89910 -5.78565 -3.09208 0.08043 0.85727 1.40936 1.97192 2.77831 2.93400 3.35504 3.37265 3.43048 3.44598 3.85360 3.99187 4.10244 4.45154 4.47364 4.53475 4.69313 4.88756 4.97684 5.11435 5.19196 5.24811 5.26467 5.33003 5.39988 5.43387 5.51215 5.66335 5.74546 5.76476 5.78343 5.94098 5.96090 6.02573 6.09923 6.15090 6.28388 6.35128 6.46430 6.54492 6.57513 6.72717 6.97691 7.17615 7.49644 7.51082 7.53578 7.75019 7.82680 8.17983 9.13822 9.77797 10.45285 11.35025 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002750 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.939059 B =10179.017559 C =11193.491205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.109 3.891 15 N -0.592 5.592 16 C 0.592 3.408 17 O -0.521 6.521 18 C -0.016 4.016 19 C -0.101 4.101 20 C -0.198 4.198 21 C 0.173 3.827 22 N -0.495 5.495 23 C 0.116 3.884 24 C -0.159 4.159 25 C 0.096 3.904 26 O -0.167 6.167 27 C 0.115 3.885 28 C -0.129 4.129 29 C 0.169 3.831 30 H 0.019 0.981 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.148 0.852 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -20.977 -5.569 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.145 4.145 13 H 0.099 0.901 14 C -0.012 4.012 15 N -0.322 5.322 16 C 0.379 3.621 17 O -0.400 6.400 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.202 4.202 21 C 0.009 3.991 22 N -0.205 5.205 23 C -0.034 4.034 24 C -0.179 4.179 25 C 0.040 3.960 26 O -0.068 6.068 27 C -0.007 4.007 28 C -0.169 4.169 29 C 0.060 3.940 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.884 -21.193 -5.962 22.033 hybrid contribution 0.607 1.671 0.542 1.859 sum -0.278 -19.522 -5.420 20.262 Atomic orbital electron populations 1.69953 1.04955 1.25151 1.56497 1.24791 0.95638 0.97652 1.02154 0.86169 0.78774 0.83755 0.77517 1.21645 1.21798 1.20601 1.18997 0.91500 0.82571 1.42547 0.90274 1.44190 1.02168 1.00737 1.84724 1.21518 0.84218 0.88609 1.00382 1.22714 0.95054 1.00013 0.99567 1.22584 0.98214 0.92842 1.00859 0.90128 1.22282 0.79414 0.97887 1.01642 1.48259 1.09372 1.33267 1.41329 1.16837 0.85664 0.80120 0.79506 1.90868 1.18317 1.73134 1.57632 1.22226 0.83805 1.01453 0.99070 1.22665 0.97822 0.94176 0.97636 1.20959 0.95395 1.02174 1.01632 1.22460 0.91786 0.89929 0.94904 1.67810 1.03485 1.28751 1.20441 1.22630 0.99281 0.91819 0.89679 1.21101 0.92847 0.99759 1.04187 1.20094 0.94302 0.89137 0.92426 1.84346 1.22881 1.46034 1.53494 1.21785 0.90570 0.90377 0.97931 1.21852 0.99059 0.93362 1.02584 1.20501 0.91043 0.87817 0.94616 0.96384 0.93716 0.93941 0.93136 0.92176 0.92041 0.90569 0.88138 0.80693 0.81663 0.81347 0.83409 0.91290 0.88930 0.90183 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.52 55.49 0.58 -25.85 16 2 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 21.74 29.56 -169.99 -5.03 16.72 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.11 9.85 -15.06 -0.15 -6.26 16 8 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 9 N -0.59 -14.43 3.35 -163.45 -0.55 -14.98 16 10 C 0.18 4.11 5.45 -1.91 -0.01 4.10 16 11 C -0.13 -2.33 6.54 -25.13 -0.16 -2.50 16 12 C -0.12 -2.08 2.85 -89.53 -0.26 -2.34 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.11 1.49 5.52 -3.76 -0.02 1.47 16 15 N -0.59 -8.46 3.00 -173.91 -0.52 -8.98 16 16 C 0.59 8.57 7.62 -12.72 -0.10 8.47 16 17 O -0.52 -8.58 16.17 5.23 0.08 -8.49 16 18 C -0.02 -0.21 6.70 -36.90 -0.25 -0.45 16 19 C -0.10 -1.09 10.81 -37.29 -0.40 -1.49 16 20 C -0.20 -2.03 6.43 -105.22 -0.68 -2.71 16 21 C 0.17 1.53 11.28 -17.17 -0.19 1.34 16 22 N -0.49 -4.69 10.34 -13.00 -0.13 -4.82 16 23 C 0.12 0.90 11.13 -17.52 -0.20 0.71 16 24 C -0.16 -1.32 10.13 -39.39 -0.40 -1.72 16 25 C 0.10 1.03 7.48 -38.13 -0.29 0.74 16 26 O -0.17 -1.99 7.03 3.70 0.03 -1.96 16 27 C 0.12 1.65 6.34 -3.49 -0.02 1.63 16 28 C -0.13 -2.21 5.49 -27.13 -0.15 -2.36 16 29 C 0.17 3.26 2.55 -68.30 -0.17 3.09 16 30 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 1.09 7.72 -51.93 -0.40 0.69 16 33 H 0.05 1.31 7.32 -51.93 -0.38 0.93 16 34 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.98 8.07 -51.93 -0.42 0.57 16 37 H 0.10 1.29 4.28 -53.44 -0.23 1.06 16 38 H 0.18 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.32 6.92 -51.93 -0.36 0.96 16 44 H 0.08 1.38 7.63 -51.93 -0.40 0.98 16 45 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -31.82 361.27 -9.54 -41.36 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.91 Total: 0.10 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.54 Total: 1.46 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.62 Total: -54.63 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.11 Total: -10.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.82 -9.54 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.862 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds