Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48501 * 109.46943 * 270.00628 * 3 2 1 5 5 H 1.48501 * 109.46785 * 30.00112 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00317 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34770 * 115.76319 * 180.54056 * 15 14 12 17 17 O 1.21559 * 120.00197 * 0.02562 * 16 15 14 18 18 C 1.47791 * 119.99607 * 180.02562 * 16 15 14 19 19 N 1.32817 * 120.07603 * 359.97438 * 18 16 15 20 20 C 1.31673 * 122.01276 * 180.02562 * 19 18 16 21 21 C 1.38392 * 121.70256 * 0.02562 * 20 19 18 22 22 C 1.38865 * 119.13157 * 359.97438 * 21 20 19 23 23 O 1.34424 * 134.63766 * 179.97438 * 22 21 20 24 24 C 1.34451 * 110.85566 * 180.02562 * 23 22 21 25 25 C 1.34303 * 110.16387 * 0.02562 * 24 23 22 26 26 C 1.40205 * 120.07067 * 179.72794 * 18 16 15 27 27 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 28 28 C 1.51864 * 112.74934 * 6.20384 * 27 15 14 29 29 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.98356 * 90.75376 * 29 9 7 31 31 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 33 33 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 34 34 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 35 35 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 36 36 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 37 37 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 38 38 H 1.07999 * 119.15113 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.43591 * 180.02562 * 21 20 19 40 40 H 1.08001 * 124.91750 * 179.97438 * 24 23 22 41 41 H 1.07997 * 126.89246 * 180.02562 * 25 24 23 42 42 H 1.09003 * 108.82833 * 245.36776 * 27 15 14 43 43 H 1.08996 * 108.82722 * 127.05014 * 27 15 14 44 44 H 1.08993 * 109.00183 * 203.59622 * 28 27 15 45 45 H 1.09003 * 108.92922 * 84.79401 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8429 -3.4728 -4.0917 17 8 0.8342 -3.7710 -4.7011 18 6 2.9708 -2.8306 -4.7986 19 7 4.0733 -2.5037 -4.1342 20 6 5.1004 -1.9300 -4.7255 21 6 5.0890 -1.6336 -6.0772 22 6 3.9653 -1.9502 -6.8292 23 8 3.6232 -1.8091 -8.1215 24 6 2.3881 -2.2911 -8.3451 25 6 1.8648 -2.7703 -7.2048 26 6 2.8812 -2.5698 -6.1733 27 6 3.1690 -3.3365 -2.1401 28 6 3.2582 -3.7886 -0.6931 29 6 1.9174 -3.7300 -0.0016 30 1 2.0489 -4.0603 1.0288 31 1 -0.4849 0.8401 0.0004 32 1 -0.5701 -2.0626 -0.8770 33 1 -0.5637 -2.1141 0.9075 34 1 -1.2969 -4.2793 -0.6687 35 1 -0.5707 -4.4632 0.9632 36 1 0.6112 -5.2996 -2.6903 37 1 -0.0791 -3.7138 -2.3522 38 1 5.9744 -1.6843 -4.1405 39 1 5.9431 -1.1631 -6.5414 40 1 1.8888 -2.2919 -9.3027 41 1 0.8906 -3.2186 -7.0767 42 1 3.2533 -2.2502 -2.1749 43 1 4.0004 -3.7697 -2.6960 44 1 3.9596 -3.1447 -0.1627 45 1 3.6274 -4.8139 -0.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 73.379253 kcal Electronic energy + Delta-G solvation = -31089.589193 eV Core-core repulsion = 27075.858812 eV Total energy + Delta-G solvation = -4013.730381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.76017 -40.49677 -38.92996 -37.87530 -35.05724 -33.04112 -32.86071 -31.80482 -31.75559 -30.00848 -29.25632 -27.69228 -25.58529 -24.63507 -23.62010 -23.11926 -22.48441 -21.94462 -20.12546 -19.85897 -18.03741 -17.94368 -17.52436 -16.56514 -16.44660 -16.26973 -15.93417 -15.54946 -15.40361 -14.75578 -14.40171 -14.36121 -14.06612 -13.60379 -13.47930 -13.32467 -13.01575 -12.92384 -12.74772 -12.39193 -12.02809 -11.89032 -11.48720 -11.40160 -11.18252 -10.87140 -10.72010 -10.65221 -10.38310 -10.16624 -10.00170 -9.84615 -9.79635 -9.63517 -9.54716 -9.46260 -9.00773 -8.55682 -8.45990 -7.88619 -6.76951 -5.66207 -2.97848 0.32823 1.12088 2.20597 2.50136 2.93958 3.36507 3.41510 3.45862 3.48321 3.90294 4.18213 4.32187 4.45906 4.52625 4.81327 4.92882 5.10746 5.16295 5.22131 5.32710 5.36061 5.56390 5.60928 5.62698 5.66279 5.74302 5.79431 5.84094 6.04407 6.10357 6.14656 6.19286 6.25980 6.35528 6.40040 6.49970 6.60048 6.68861 6.75780 6.83737 6.87929 7.01046 7.25491 7.60524 7.65196 7.67672 7.84767 7.86569 8.29218 8.54033 9.25378 9.87983 10.55851 11.46472 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.004635 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.827841 B = 6039.886774 C = 7103.056287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.142 4.142 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.142 3.858 15 N -0.548 5.548 16 C 0.549 3.451 17 O -0.543 6.543 18 C 0.147 3.853 19 N -0.446 5.446 20 C 0.104 3.896 21 C -0.142 4.142 22 C 0.078 3.922 23 O -0.191 6.191 24 C -0.005 4.005 25 C -0.170 4.170 26 C -0.136 4.136 27 C 0.134 3.866 28 C -0.130 4.130 29 C 0.169 3.831 30 H 0.023 0.977 31 H 0.250 0.750 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.175 0.825 39 H 0.145 0.855 40 H 0.214 0.786 41 H 0.173 0.827 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -8.198 -11.946 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.100 0.900 14 C 0.019 3.981 15 N -0.276 5.276 16 C 0.335 3.665 17 O -0.421 6.421 18 C 0.004 3.996 19 N -0.160 5.160 20 C -0.049 4.049 21 C -0.163 4.163 22 C 0.023 3.977 23 O -0.091 6.091 24 C -0.069 4.069 25 C -0.190 4.190 26 C -0.140 4.140 27 C 0.012 3.988 28 C -0.169 4.169 29 C 0.061 3.939 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.192 0.808 39 H 0.163 0.837 40 H 0.230 0.770 41 H 0.190 0.810 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.836 -8.168 -11.458 16.106 hybrid contribution 0.264 1.260 -0.785 1.508 sum 8.100 -6.909 -12.243 16.225 Atomic orbital electron populations 1.69948 1.04820 1.24794 1.57276 1.24741 0.95595 0.97408 1.02656 0.86229 0.78685 0.84116 0.77448 1.21876 1.21819 1.20678 1.18919 0.90262 0.82122 1.43125 0.90405 1.44360 1.01374 0.99248 1.86636 1.21300 0.84415 0.88180 1.00885 1.23331 0.95652 0.99791 0.99332 1.22444 0.98649 0.98738 0.93478 0.89996 1.20358 0.87677 0.96729 0.93321 1.46336 1.16831 1.56765 1.07638 1.17802 0.85921 0.80066 0.82685 1.90709 1.30559 1.53764 1.67069 1.20802 0.93245 0.96637 0.88909 1.68660 0.99729 1.10820 1.36776 1.22817 0.97269 0.94151 0.90630 1.21161 0.96574 1.04368 0.94151 1.19703 0.96129 0.99028 0.82812 1.83946 1.31981 1.68163 1.24989 1.24212 0.82900 0.99125 1.00693 1.22718 1.01174 1.04929 0.90177 1.20597 0.95683 1.02824 0.94878 1.21323 0.83407 1.01727 0.92369 1.21378 0.99325 1.00280 0.95898 1.20241 0.90878 0.87276 0.95487 0.95933 0.93926 0.93602 0.94009 0.91969 0.92234 0.93096 0.91259 0.80849 0.83679 0.76975 0.80997 0.89713 0.90359 0.90653 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 10.41 55.49 0.58 -26.63 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -5.76 8.84 -15.06 -0.13 -5.90 16 8 H 0.08 2.00 6.89 -52.49 -0.36 1.64 16 9 N -0.59 -14.40 3.04 -164.19 -0.50 -14.90 16 10 C 0.18 4.27 4.82 -2.54 -0.01 4.26 16 11 C -0.14 -2.65 6.14 -24.11 -0.15 -2.80 16 12 C -0.11 -1.99 3.80 -88.93 -0.34 -2.33 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 14 C 0.14 2.67 4.61 -6.19 -0.03 2.64 16 15 N -0.55 -10.56 3.19 -180.31 -0.58 -11.13 16 16 C 0.55 10.83 7.50 -12.36 -0.09 10.74 16 17 O -0.54 -11.41 14.78 5.31 0.08 -11.33 16 18 C 0.15 2.58 6.62 -82.80 -0.55 2.04 16 19 N -0.45 -7.01 5.37 -9.68 -0.05 -7.06 16 20 C 0.10 1.26 11.13 -17.56 -0.20 1.07 16 21 C -0.14 -1.61 10.13 -39.29 -0.40 -2.01 16 22 C 0.08 1.07 7.48 -38.28 -0.29 0.78 16 23 O -0.19 -2.36 10.57 4.98 0.05 -2.31 16 24 C -0.01 -0.05 11.97 29.34 0.35 0.30 16 25 C -0.17 -2.34 10.31 -37.78 -0.39 -2.73 16 26 C -0.14 -2.17 6.16 -104.90 -0.65 -2.81 16 27 C 0.13 2.42 4.15 -5.83 -0.02 2.39 16 28 C -0.13 -2.26 5.10 -28.33 -0.14 -2.40 16 29 C 0.17 3.35 2.92 -68.35 -0.20 3.15 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 1.26 7.13 -51.93 -0.37 0.89 16 33 H 0.04 1.12 7.58 -51.93 -0.39 0.72 16 34 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.07 1.49 6.56 -51.93 -0.34 1.14 16 38 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.17 2.38 7.29 -52.49 -0.38 1.99 16 42 H 0.08 1.77 6.47 -51.93 -0.34 1.43 16 43 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 44 H 0.07 1.33 7.36 -51.93 -0.38 0.94 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -33.40 351.78 -9.28 -42.68 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.81 Total: 2.11 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.33 Total: 6.06 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.55 Total: -59.73 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.13 Total: -13.64 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.40 -9.28 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.055 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds