Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47131 * 266.90022 * 3 2 1 5 5 H 1.48500 * 109.47045 * 26.89523 * 3 2 1 6 6 H 1.48497 * 109.47076 * 146.89614 * 3 2 1 7 7 C 1.38813 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99877 * 184.33438 * 7 2 1 9 9 N 1.36935 * 120.00193 * 4.33660 * 7 2 1 10 10 C 1.48259 * 126.39122 * 350.99747 * 9 7 2 11 11 C 1.55289 * 106.98920 * 184.93985 * 10 9 7 12 12 C 1.53739 * 101.87968 * 22.48691 * 11 10 9 13 13 H 1.09002 * 111.31137 * 79.82333 * 12 11 10 14 14 C 1.52242 * 114.74812 * 207.22159 * 12 11 10 15 15 N 1.47719 * 106.36693 * 169.57693 * 14 12 11 16 16 C 1.34776 * 119.67915 * 127.94241 * 15 14 12 17 17 O 1.21570 * 119.99525 * 177.21044 * 16 15 14 18 18 C 1.47775 * 120.00483 * 357.21010 * 16 15 14 19 19 N 1.32819 * 120.07336 * 45.50074 * 18 16 15 20 20 C 1.31675 * 122.01337 * 179.97438 * 19 18 16 21 21 C 1.38395 * 121.70197 * 359.97438 * 20 19 18 22 22 C 1.38860 * 119.12830 * 0.02562 * 21 20 19 23 23 O 1.34431 * 134.62651 * 179.97438 * 22 21 20 24 24 C 1.34448 * 110.84577 * 179.33055 * 23 22 21 25 25 C 1.34306 * 110.16695 * 0.60134 * 24 23 22 26 26 C 1.40200 * 120.07301 * 225.22692 * 18 16 15 27 27 C 1.46592 * 120.63175 * 307.96013 * 15 14 12 28 28 C 1.53954 * 110.57683 * 47.80844 * 27 15 14 29 29 C 1.45469 * 126.40592 * 171.02142 * 9 7 2 30 30 H 1.09002 * 108.76851 * 265.95852 * 29 9 7 31 31 H 0.97002 * 119.99837 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.95190 * 65.60344 * 10 9 7 33 33 H 1.09001 * 109.93643 * 304.26171 * 10 9 7 34 34 H 1.09004 * 110.95287 * 264.33044 * 11 10 9 35 35 H 1.09011 * 110.95540 * 140.64424 * 11 10 9 36 36 H 1.09003 * 110.06772 * 288.79451 * 14 12 11 37 37 H 1.09001 * 110.06469 * 50.36515 * 14 12 11 38 38 H 1.08009 * 119.14704 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.43354 * 180.02562 * 21 20 19 40 40 H 1.08006 * 124.91371 * 180.14369 * 24 23 22 41 41 H 1.07999 * 126.89291 * 179.49036 * 25 24 23 42 42 H 1.08999 * 109.25250 * 168.08913 * 27 15 14 43 43 H 1.09000 * 109.26041 * 287.52253 * 27 15 14 44 44 H 1.09003 * 109.88034 * 68.39833 * 28 27 15 45 45 H 1.08998 * 109.88790 * 189.48675 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5633 2.0085 -1.3980 5 1 1.4164 2.6707 0.6333 6 1 3.5134 1.4599 0.7646 7 6 2.0102 -1.2022 0.0005 8 1 3.0880 -1.2035 0.0712 9 7 1.3285 -2.3864 -0.0886 10 6 -0.1410 -2.5639 -0.0045 11 6 -0.4159 -4.0920 -0.0336 12 6 0.9285 -4.6645 0.4442 13 1 1.0210 -4.6063 1.5287 14 6 1.2394 -6.0669 -0.0604 15 7 2.6511 -6.3303 0.2856 16 6 2.9755 -7.4537 0.9559 17 8 4.1406 -7.7013 1.1992 18 6 1.9151 -8.3844 1.3951 19 7 0.9417 -8.7268 0.5587 20 6 -0.0216 -9.5530 0.9096 21 6 -0.0743 -10.1138 2.1737 22 6 0.9142 -9.7962 3.0958 23 8 1.1650 -10.1456 4.3694 24 6 2.2876 -9.5552 4.8153 25 6 2.8162 -8.7801 3.8543 26 6 1.9373 -8.9125 2.6936 27 6 3.7025 -5.3814 -0.0927 28 6 3.2955 -3.9448 0.2827 29 6 1.9107 -3.7053 -0.2830 30 1 1.9123 -3.9343 -1.3487 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6230 -2.0836 -0.8559 33 1 -0.5142 -2.1371 0.9265 34 1 -0.6452 -4.4276 -1.0450 35 1 -1.2190 -4.3568 0.6544 36 1 0.5920 -6.7932 0.4309 37 1 1.1041 -6.1140 -1.1410 38 1 -0.7901 -9.8002 0.1919 39 1 -0.8737 -10.7895 2.4395 40 1 2.7001 -9.6799 5.8057 41 1 3.7107 -8.1791 3.9250 42 1 4.6249 -5.6410 0.4268 43 1 3.8683 -5.4385 -1.1685 44 1 3.2767 -3.8363 1.3671 45 1 4.0003 -3.2347 -0.1498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 54.992020 kcal Electronic energy + Delta-G solvation = -30075.624128 eV Core-core repulsion = 26061.096416 eV Total energy + Delta-G solvation = -4014.527712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.00426 -40.50010 -39.06306 -38.11921 -35.29267 -33.28839 -32.57575 -32.52092 -31.48391 -30.14272 -29.44542 -28.04914 -25.68760 -24.60805 -23.45219 -23.39480 -22.67311 -21.72761 -20.20970 -19.91204 -19.25587 -18.24072 -17.86627 -17.00375 -16.59461 -16.49090 -15.87768 -15.67883 -15.26756 -14.96251 -14.61795 -14.44812 -14.09149 -13.84662 -13.59518 -13.53961 -13.22281 -13.07371 -13.00413 -12.50376 -12.22089 -12.18061 -11.70748 -11.52666 -11.36411 -10.81410 -10.79165 -10.70082 -10.62331 -10.41205 -10.12421 -10.11862 -9.88382 -9.84441 -9.77386 -9.60716 -9.28433 -8.70923 -8.60180 -8.48353 -6.80771 -5.72706 -3.05245 0.13622 0.86321 1.95756 2.26780 2.54499 2.90390 3.40414 3.41256 3.45605 3.46928 3.91898 4.01526 4.23222 4.49893 4.52027 4.67844 4.85626 4.94704 5.00886 5.25099 5.32732 5.34050 5.38888 5.41994 5.50296 5.56441 5.59883 5.70309 5.86193 5.89569 5.90275 5.97373 6.08535 6.14827 6.21826 6.26182 6.39406 6.47384 6.59543 6.61800 6.64453 6.84485 7.07852 7.36965 7.46110 7.53589 7.63988 7.80210 8.09794 8.24790 9.19641 9.83297 10.52365 11.40734 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.002926 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.655206 B = 9568.151473 C = 9881.565678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.128 4.128 13 H 0.076 0.924 14 C 0.120 3.880 15 N -0.584 5.584 16 C 0.571 3.429 17 O -0.536 6.536 18 C 0.152 3.848 19 N -0.457 5.457 20 C 0.110 3.890 21 C -0.142 4.142 22 C 0.084 3.916 23 O -0.188 6.188 24 C 0.008 3.992 25 C -0.181 4.181 26 C -0.142 4.142 27 C 0.116 3.884 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.022 0.978 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.177 0.823 39 H 0.149 0.851 40 H 0.216 0.784 41 H 0.168 0.832 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -21.569 5.695 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.149 4.149 13 H 0.095 0.905 14 C -0.002 4.002 15 N -0.315 5.315 16 C 0.356 3.644 17 O -0.413 6.413 18 C 0.009 3.991 19 N -0.170 5.170 20 C -0.043 4.043 21 C -0.162 4.162 22 C 0.029 3.971 23 O -0.088 6.088 24 C -0.057 4.057 25 C -0.201 4.201 26 C -0.146 4.146 27 C -0.007 4.007 28 C -0.168 4.168 29 C 0.060 3.940 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.166 0.834 40 H 0.233 0.767 41 H 0.185 0.815 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.112 -21.256 5.128 21.866 hybrid contribution 0.420 0.701 0.884 1.203 sum 0.532 -20.555 6.012 21.423 Atomic orbital electron populations 1.69942 1.04923 1.25072 1.56802 1.24826 0.95668 0.97627 1.02176 0.86181 0.78640 0.83622 0.77641 1.21549 1.21772 1.20747 1.18990 0.90669 0.82330 1.43487 0.90435 1.44227 1.02016 1.00579 1.85157 1.21536 0.84183 0.88029 1.00896 1.22704 0.95225 0.99529 0.99887 1.22691 0.98076 0.93769 1.00344 0.90531 1.22031 0.79980 0.97198 1.00976 1.48186 1.09504 1.19932 1.53897 1.17771 0.87189 0.81367 0.78065 1.90783 1.18544 1.74886 1.57074 1.20623 0.93633 0.95989 0.88903 1.67914 1.01556 1.12948 1.34585 1.22683 0.96025 0.92004 0.93634 1.21175 0.98725 1.03972 0.92346 1.19682 0.96731 0.96417 0.84263 1.83979 1.39917 1.60472 1.24402 1.24223 0.85640 0.95589 1.00207 1.22582 1.02347 1.04074 0.91129 1.20591 0.97498 1.00707 0.95760 1.21718 0.90248 0.88454 1.00245 1.21889 0.99201 0.93923 1.01759 1.20632 0.91024 0.86777 0.95595 0.96023 0.93769 0.93447 0.93882 0.92130 0.92270 0.88844 0.90591 0.80635 0.83353 0.76719 0.81474 0.89290 0.91437 0.91559 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.51 55.49 0.58 -26.24 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.18 9.89 -15.06 -0.15 -6.33 16 8 H 0.08 2.04 7.17 -52.48 -0.38 1.66 16 9 N -0.60 -14.84 3.35 -163.03 -0.55 -15.39 16 10 C 0.18 4.24 5.44 -1.86 -0.01 4.23 16 11 C -0.13 -2.43 6.53 -25.13 -0.16 -2.60 16 12 C -0.13 -2.25 2.85 -89.37 -0.26 -2.51 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.12 1.80 5.49 -3.76 -0.02 1.78 16 15 N -0.58 -9.16 3.00 -173.63 -0.52 -9.68 16 16 C 0.57 9.22 7.34 -12.36 -0.09 9.13 16 17 O -0.54 -9.70 16.15 5.30 0.09 -9.62 16 18 C 0.15 2.17 5.76 -82.81 -0.48 1.69 16 19 N -0.46 -5.71 7.69 -9.68 -0.07 -5.78 16 20 C 0.11 1.00 11.13 -17.56 -0.20 0.80 16 21 C -0.14 -1.22 10.13 -39.29 -0.40 -1.62 16 22 C 0.08 0.93 7.48 -38.29 -0.29 0.64 16 23 O -0.19 -1.90 10.57 4.96 0.05 -1.85 16 24 C 0.01 0.06 11.97 29.35 0.35 0.41 16 25 C -0.18 -2.02 10.86 -37.78 -0.41 -2.43 16 26 C -0.14 -1.85 6.14 -104.90 -0.64 -2.50 16 27 C 0.12 1.80 6.32 -3.49 -0.02 1.77 16 28 C -0.13 -2.29 5.44 -27.00 -0.15 -2.44 16 29 C 0.17 3.38 2.55 -67.99 -0.17 3.21 16 30 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.24 7.45 -51.93 -0.39 0.86 16 33 H 0.04 1.13 7.61 -51.93 -0.40 0.74 16 34 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.09 1.32 4.90 -51.93 -0.25 1.07 16 37 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.22 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.37 6.97 -51.93 -0.36 1.01 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 45 H 0.08 1.41 7.64 -51.93 -0.40 1.02 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -33.53 361.96 -9.12 -42.65 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.94 Total: 0.52 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.19 Total: 2.95 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.56 Total: -57.08 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.14 Total: -11.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.53 -9.12 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.644 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds