Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00368 * 2 1 4 4 H 1.48504 * 109.47138 * 85.00621 * 3 2 1 5 5 H 1.48494 * 109.47311 * 325.00442 * 3 2 1 6 6 H 1.48504 * 109.47318 * 204.99966 * 3 2 1 7 7 C 1.38813 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00290 * 184.96553 * 7 2 1 9 9 N 1.36940 * 119.99955 * 4.96757 * 7 2 1 10 10 C 1.46869 * 125.33979 * 4.61396 * 9 7 2 11 11 C 1.54461 * 106.66460 * 195.33420 * 10 9 7 12 12 C 1.53384 * 102.53763 * 332.27689 * 11 10 9 13 13 H 1.09007 * 105.69511 * 277.66181 * 12 11 10 14 14 C 1.49270 * 114.28186 * 161.97367 * 12 11 10 15 15 N 1.45257 * 114.71558 * 258.58577 * 14 12 11 16 16 C 1.34781 * 120.15854 * 143.67382 * 15 14 12 17 17 O 1.21557 * 120.00548 * 180.80845 * 16 15 14 18 18 C 1.47785 * 119.99292 * 0.80391 * 16 15 14 19 19 N 1.32818 * 120.07739 * 7.29434 * 18 16 15 20 20 C 1.31675 * 122.01212 * 180.02562 * 19 18 16 21 21 C 1.38396 * 121.70267 * 359.97068 * 20 19 18 22 22 C 1.38860 * 119.13306 * 0.02945 * 21 20 19 23 23 O 1.34426 * 134.63806 * 179.97438 * 22 21 20 24 24 C 1.34450 * 110.85487 * 180.02562 * 23 22 21 25 25 C 1.34310 * 110.16856 * 0.02562 * 24 23 22 26 26 C 1.40201 * 120.06846 * 187.01693 * 18 16 15 27 27 C 1.46828 * 119.54069 * 323.90631 * 15 14 12 28 28 C 1.52960 * 107.40149 * 54.77534 * 27 15 14 29 29 C 1.48007 * 125.33582 * 184.31422 * 9 7 2 30 30 H 1.09004 * 110.22882 * 303.30811 * 29 9 7 31 31 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.01656 * 314.64016 * 10 9 7 33 33 H 1.09004 * 110.01912 * 75.98426 * 10 9 7 34 34 H 1.09006 * 110.79606 * 90.53651 * 11 10 9 35 35 H 1.09000 * 110.79870 * 214.00787 * 11 10 9 36 36 H 1.09006 * 108.44506 * 20.48039 * 14 12 11 37 37 H 1.09001 * 108.44676 * 137.79513 * 14 12 11 38 38 H 1.07995 * 119.14689 * 180.02562 * 20 19 18 39 39 H 1.07990 * 120.43511 * 180.02562 * 21 20 19 40 40 H 1.07996 * 124.91768 * 180.02562 * 24 23 22 41 41 H 1.07992 * 126.89762 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.87086 * 295.29642 * 27 15 14 43 43 H 1.08998 * 109.93012 * 174.27763 * 27 15 14 44 44 H 1.08998 * 109.38105 * 178.38197 * 28 27 15 45 45 H 1.08998 * 109.38495 * 58.69951 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1072 1.3948 5 1 1.5046 2.6198 -0.8029 6 1 3.5967 1.4118 -0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0872 -1.2041 0.0804 9 7 1.3292 -2.3858 -0.1038 10 6 -0.1182 -2.5176 -0.3152 11 6 -0.4838 -3.9799 0.0220 12 6 0.8203 -4.7279 -0.2823 13 1 0.8177 -4.8989 -1.3589 14 6 0.9107 -6.0819 0.3394 15 7 1.7275 -6.1462 1.5388 16 6 1.3727 -6.9546 2.5572 17 8 2.0502 -6.9952 3.5656 18 6 0.1596 -7.7917 2.4478 19 7 -0.5007 -7.8596 1.2974 20 6 -1.5856 -8.5926 1.1575 21 6 -2.1005 -9.3367 2.2046 22 6 -1.4566 -9.3089 3.4346 23 8 -1.6736 -9.8890 4.6276 24 6 -0.7321 -9.5243 5.5155 25 6 0.1459 -8.6857 4.9413 26 6 -0.2933 -8.5204 3.5566 27 6 2.9382 -5.3210 1.6353 28 6 2.5246 -3.8706 1.3807 29 6 1.9375 -3.7329 -0.0259 30 1 2.7178 -3.8382 -0.7797 31 1 -0.4850 0.8401 0.0004 32 1 -0.6552 -1.8367 0.3452 33 1 -0.3647 -2.3007 -1.3547 34 1 -0.7504 -4.0793 1.0743 35 1 -1.2918 -4.3343 -0.6180 36 1 -0.0975 -6.4183 0.5815 37 1 1.3331 -6.7701 -0.3928 38 1 -2.0859 -8.6144 0.2007 39 1 -2.9915 -9.9312 2.0670 40 1 -0.6882 -9.8574 6.5418 41 1 1.0068 -8.2296 5.4071 42 1 3.6627 -5.6370 0.8847 43 1 3.3723 -5.4132 2.6308 44 1 3.3973 -3.2241 1.4733 45 1 1.7765 -3.5734 2.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 67.506546 kcal Electronic energy + Delta-G solvation = -30202.067797 eV Core-core repulsion = 26188.082756 eV Total energy + Delta-G solvation = -4013.985041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.98050 -40.51831 -38.97794 -38.06787 -35.32144 -33.20208 -32.63237 -32.59833 -31.36081 -30.15750 -29.37576 -28.08511 -25.77565 -24.59570 -23.50542 -23.36881 -22.80202 -21.80167 -20.26762 -20.06076 -18.38284 -18.23128 -17.62671 -16.93019 -16.68813 -16.62398 -15.83135 -15.70738 -15.38119 -14.82180 -14.68332 -14.42627 -14.08622 -13.75120 -13.55226 -13.47472 -13.16342 -12.98167 -12.76918 -12.37180 -12.19772 -12.12092 -11.94385 -11.37578 -11.24813 -10.91890 -10.79866 -10.70265 -10.61126 -10.27230 -10.08250 -10.00307 -9.91975 -9.75792 -9.54783 -9.36432 -8.99287 -8.68588 -8.61728 -8.27027 -6.78608 -5.60027 -3.02743 0.08064 0.85498 2.00328 2.29633 2.66240 3.03224 3.41949 3.47272 3.49142 3.62060 3.88417 4.08087 4.23174 4.51188 4.56938 4.71644 4.89431 4.96154 5.16521 5.32273 5.37469 5.41697 5.45685 5.53482 5.54851 5.58742 5.68017 5.81576 5.93200 6.00470 6.04342 6.07939 6.11652 6.32280 6.38875 6.43276 6.58627 6.63042 6.68214 6.74379 6.85736 7.05470 7.18185 7.38104 7.54784 7.61273 7.71529 7.91616 8.21800 8.40649 9.26980 9.87610 10.52167 11.42433 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002920 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.585584 B = 9587.953895 C = 9965.910471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.154 3.846 11 C -0.131 4.131 12 C -0.107 4.107 13 H 0.061 0.939 14 C 0.096 3.904 15 N -0.572 5.572 16 C 0.565 3.435 17 O -0.539 6.539 18 C 0.145 3.855 19 N -0.450 5.450 20 C 0.105 3.895 21 C -0.137 4.137 22 C 0.081 3.919 23 O -0.189 6.189 24 C 0.001 3.999 25 C -0.173 4.173 26 C -0.134 4.134 27 C 0.107 3.893 28 C -0.136 4.136 29 C 0.171 3.829 30 H 0.039 0.961 31 H 0.250 0.750 32 H 0.097 0.903 33 H 0.010 0.990 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.140 0.860 37 H 0.053 0.947 38 H 0.177 0.823 39 H 0.148 0.852 40 H 0.216 0.784 41 H 0.174 0.826 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -21.956 5.468 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.029 3.971 11 C -0.170 4.170 12 C -0.126 4.126 13 H 0.080 0.920 14 C -0.027 4.027 15 N -0.302 5.302 16 C 0.351 3.649 17 O -0.417 6.417 18 C 0.003 3.997 19 N -0.163 5.163 20 C -0.048 4.048 21 C -0.158 4.158 22 C 0.026 3.974 23 O -0.089 6.089 24 C -0.063 4.063 25 C -0.193 4.193 26 C -0.138 4.138 27 C -0.015 4.015 28 C -0.177 4.177 29 C 0.064 3.936 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.072 0.928 38 H 0.194 0.806 39 H 0.166 0.834 40 H 0.232 0.768 41 H 0.191 0.809 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.723 -21.433 5.282 22.386 hybrid contribution 0.217 0.581 0.524 0.812 sum -3.506 -20.852 5.807 21.927 Atomic orbital electron populations 1.69846 1.04874 1.24569 1.57624 1.24778 0.95663 0.97631 1.02649 0.86099 0.78597 0.83650 0.77437 1.21738 1.21749 1.20730 1.19033 0.90663 0.82523 1.42542 0.90566 1.44719 1.03367 0.99403 1.84797 1.21608 0.85358 0.90989 0.99153 1.22617 0.95237 0.98922 1.00183 1.20794 0.97468 0.93973 1.00415 0.92026 1.21638 0.99604 0.96022 0.85444 1.47589 1.25323 1.40379 1.16884 1.17664 0.83672 0.80349 0.83234 1.90734 1.53522 1.67721 1.29686 1.20818 0.95229 0.95421 0.88268 1.68016 1.08278 1.17148 1.22906 1.22834 0.92237 0.91209 0.98512 1.21172 1.02271 1.03502 0.88860 1.19727 0.95500 0.94958 0.87183 1.83971 1.47310 1.59839 1.17743 1.24270 0.88354 0.98703 0.95009 1.22729 1.02750 1.02026 0.91785 1.20593 0.97017 1.00314 0.95887 1.21789 0.85743 0.91244 1.02715 1.22390 1.01811 0.93133 1.00338 1.20488 0.93243 0.86173 0.93712 0.94330 0.93902 0.88508 0.97197 0.92865 0.92268 0.84398 0.92825 0.80582 0.83389 0.76797 0.80899 0.91440 0.89367 0.91195 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.15 55.49 0.56 -26.43 16 2 C -0.01 -0.33 5.46 -17.43 -0.10 -0.42 16 3 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.04 9.83 -15.06 -0.15 -6.19 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.11 3.05 -163.99 -0.50 -15.61 16 10 C 0.15 3.75 5.82 -3.07 -0.02 3.74 16 11 C -0.13 -2.50 6.36 -25.77 -0.16 -2.67 16 12 C -0.11 -1.88 2.45 -92.87 -0.23 -2.11 16 13 H 0.06 1.04 8.05 -51.92 -0.42 0.62 16 14 C 0.10 1.45 5.19 -6.55 -0.03 1.42 16 15 N -0.57 -9.26 2.99 -177.78 -0.53 -9.79 16 16 C 0.56 9.32 7.66 -12.35 -0.09 9.23 16 17 O -0.54 -9.76 14.64 5.32 0.08 -9.68 16 18 C 0.15 2.08 6.64 -82.80 -0.55 1.53 16 19 N -0.45 -5.57 5.99 -9.68 -0.06 -5.62 16 20 C 0.10 0.94 11.13 -17.56 -0.20 0.75 16 21 C -0.14 -1.18 10.13 -39.29 -0.40 -1.58 16 22 C 0.08 0.90 7.49 -38.28 -0.29 0.61 16 23 O -0.19 -1.90 10.57 4.98 0.05 -1.85 16 24 C 0.00 0.01 11.97 29.35 0.35 0.36 16 25 C -0.17 -1.96 10.32 -37.77 -0.39 -2.35 16 26 C -0.13 -1.76 6.16 -104.89 -0.65 -2.41 16 27 C 0.11 1.74 6.43 -3.88 -0.02 1.71 16 28 C -0.14 -2.61 5.18 -26.73 -0.14 -2.75 16 29 C 0.17 3.50 3.41 -67.69 -0.23 3.27 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.10 2.69 5.98 -51.93 -0.31 2.38 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.14 2.01 3.96 -80.38 -0.32 1.69 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.17 1.98 7.32 -52.49 -0.38 1.59 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 44 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -33.41 357.64 -9.31 -42.72 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.99 Total: 1.53 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.29 Total: 2.14 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.53 Total: -57.45 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.13 Total: -11.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.41 -9.31 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.224 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds