Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48504 * 109.46736 * 269.99437 * 3 2 1 5 5 H 1.48504 * 109.47164 * 29.99196 * 3 2 1 6 6 H 1.48495 * 109.47376 * 149.99471 * 3 2 1 7 7 C 1.38815 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.48152 * 126.40266 * 0.02614 * 9 7 2 11 11 C 1.55290 * 107.04082 * 175.07545 * 10 9 7 12 12 C 1.53738 * 101.84242 * 337.52146 * 11 10 9 13 13 H 1.09000 * 111.30954 * 280.15016 * 12 11 10 14 14 C 1.52247 * 114.74328 * 152.75453 * 12 11 10 15 15 N 1.47713 * 106.36505 * 190.43121 * 14 12 11 16 16 C 1.34779 * 119.67866 * 232.02831 * 15 14 12 17 17 O 1.21569 * 120.00186 * 172.01082 * 16 15 14 18 18 C 1.47788 * 120.00119 * 352.01616 * 16 15 14 19 19 N 1.32820 * 120.07223 * 352.09215 * 18 16 15 20 20 C 1.31673 * 122.00869 * 179.74234 * 19 18 16 21 21 C 1.38389 * 121.70012 * 0.51975 * 20 19 18 22 22 C 1.38855 * 119.13566 * 359.75440 * 21 20 19 23 23 O 1.34431 * 134.63512 * 179.97438 * 22 21 20 24 24 C 1.34454 * 110.84935 * 180.02562 * 23 22 21 25 25 C 1.34294 * 110.17047 * 359.97438 * 24 23 22 26 26 C 1.40200 * 120.07012 * 172.36184 * 18 16 15 27 27 C 1.46595 * 120.63840 * 52.05578 * 15 14 12 28 28 C 1.53948 * 110.57381 * 312.17164 * 27 15 14 29 29 C 1.45464 * 126.40459 * 179.71291 * 9 7 2 30 30 H 1.08999 * 109.26512 * 93.80102 * 29 9 7 31 31 H 0.97007 * 119.99684 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.92142 * 294.41800 * 10 9 7 33 33 H 1.08999 * 109.92373 * 55.72861 * 10 9 7 34 34 H 1.09000 * 110.95702 * 95.66061 * 11 10 9 35 35 H 1.09007 * 110.95687 * 219.38126 * 11 10 9 36 36 H 1.09000 * 110.06259 * 309.64475 * 14 12 11 37 37 H 1.08992 * 110.06741 * 71.21194 * 14 12 11 38 38 H 1.07997 * 119.14962 * 180.27223 * 20 19 18 39 39 H 1.08003 * 120.43220 * 179.73470 * 21 20 19 40 40 H 1.08005 * 124.91346 * 179.97438 * 24 23 22 41 41 H 1.07999 * 126.90033 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.25417 * 72.45853 * 27 15 14 43 43 H 1.09000 * 109.25502 * 191.92984 * 27 15 14 44 44 H 1.08999 * 109.88364 * 170.51223 * 28 27 15 45 45 H 1.09004 * 109.88425 * 291.52304 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5533 -0.0005 11 6 -0.4340 -4.0741 -0.1275 12 6 0.8689 -4.5895 -0.7603 13 1 0.8865 -4.4073 -1.8348 14 6 1.2011 -6.0408 -0.4423 15 7 2.5831 -6.2643 -0.9137 16 6 2.8503 -7.3041 -1.7286 17 8 3.9496 -7.4116 -2.2363 18 6 1.8068 -8.3135 -2.0050 19 7 0.6612 -8.2876 -1.3334 20 6 -0.2961 -9.1648 -1.5523 21 6 -0.1581 -10.1730 -2.4900 22 6 1.0184 -10.2586 -3.2225 23 8 1.4763 -11.0821 -4.1813 24 6 2.7131 -10.7244 -4.5688 25 6 3.1210 -9.6468 -3.8790 26 6 2.0263 -9.3039 -2.9727 27 6 3.6668 -5.3665 -0.5032 28 6 3.2482 -3.8959 -0.6827 29 6 1.9077 -3.7212 -0.0048 30 1 1.9932 -4.0804 1.0207 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5638 -2.1733 0.9321 33 1 -0.5796 -2.0216 -0.8480 34 1 -0.5959 -4.5234 0.8523 35 1 -1.2850 -4.2567 -0.7838 36 1 1.1402 -6.2115 0.6325 37 1 0.5147 -6.7053 -0.9671 38 1 -1.2111 -9.0980 -0.9824 39 1 -0.9550 -10.8843 -2.6499 40 1 3.2944 -11.2305 -5.3255 41 1 4.0678 -9.1360 -3.9743 42 1 3.9056 -5.5471 0.5448 43 1 4.5486 -5.5656 -1.1123 44 1 3.9878 -3.2411 -0.2218 45 1 3.1572 -3.6632 -1.7437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = 67.458102 kcal Electronic energy + Delta-G solvation = -29986.274709 eV Core-core repulsion = 25972.287567 eV Total energy + Delta-G solvation = -4013.987142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.02128 -40.51993 -39.03214 -38.10317 -35.27921 -33.23756 -32.67006 -32.51102 -31.35575 -30.15502 -29.39492 -27.96744 -25.70363 -24.55501 -23.49295 -23.30715 -22.66419 -21.68498 -20.21577 -19.85532 -19.20478 -18.27620 -17.80682 -16.80062 -16.65516 -16.46925 -15.84636 -15.73537 -15.25994 -14.90518 -14.73821 -14.35921 -14.07886 -13.82836 -13.56300 -13.50789 -13.19145 -13.08301 -12.90507 -12.49671 -12.22112 -12.13707 -11.72603 -11.44611 -11.35055 -10.78513 -10.77595 -10.65721 -10.56599 -10.26131 -10.09231 -10.04667 -9.83031 -9.81026 -9.76840 -9.57022 -8.82860 -8.74658 -8.58255 -8.37902 -6.78627 -5.67974 -3.00433 0.03755 0.80985 1.96336 2.25790 2.61027 2.97710 3.42230 3.47385 3.48943 3.57052 3.84191 4.02791 4.19099 4.51635 4.53296 4.67652 4.85656 4.91486 5.14003 5.29627 5.34538 5.39283 5.42755 5.48734 5.55857 5.61996 5.70379 5.77644 5.89408 5.96637 5.98257 6.01751 6.20281 6.30937 6.31393 6.41422 6.52569 6.55405 6.63851 6.69083 6.72923 6.97591 7.14977 7.32814 7.53083 7.60213 7.66011 7.84750 8.16791 8.28681 9.23805 9.87314 10.55817 11.44668 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.002784 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.648902 B =10055.708498 C =10785.506103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.125 4.125 13 H 0.074 0.926 14 C 0.087 3.913 15 N -0.580 5.580 16 C 0.564 3.436 17 O -0.539 6.539 18 C 0.145 3.855 19 N -0.448 5.448 20 C 0.105 3.895 21 C -0.137 4.137 22 C 0.081 3.919 23 O -0.189 6.189 24 C 0.001 3.999 25 C -0.174 4.174 26 C -0.134 4.134 27 C 0.113 3.887 28 C -0.128 4.128 29 C 0.166 3.834 30 H 0.018 0.982 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.145 0.855 38 H 0.178 0.822 39 H 0.149 0.851 40 H 0.216 0.784 41 H 0.174 0.826 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -23.801 -5.735 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.146 4.146 13 H 0.093 0.907 14 C -0.035 4.035 15 N -0.311 5.311 16 C 0.350 3.650 17 O -0.417 6.417 18 C 0.002 3.998 19 N -0.162 5.162 20 C -0.048 4.048 21 C -0.158 4.158 22 C 0.026 3.974 23 O -0.089 6.089 24 C -0.063 4.063 25 C -0.193 4.193 26 C -0.138 4.138 27 C -0.009 4.009 28 C -0.167 4.167 29 C 0.058 3.942 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.195 0.805 39 H 0.167 0.833 40 H 0.232 0.768 41 H 0.191 0.809 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.336 -23.176 -5.434 23.807 hybrid contribution 0.616 0.510 -0.574 0.984 sum 0.952 -22.666 -6.008 23.468 Atomic orbital electron populations 1.69947 1.04858 1.24921 1.57290 1.24783 0.95682 0.97579 1.02498 0.86156 0.78618 0.83715 0.77520 1.21707 1.21740 1.20730 1.19013 0.90379 0.82376 1.43371 0.90423 1.44218 1.01680 0.99503 1.86531 1.21522 0.83939 0.88415 1.00834 1.22679 0.95680 0.99552 0.99278 1.22608 0.97666 0.94044 1.00249 0.90718 1.23075 0.81685 0.97898 1.00823 1.48193 1.10740 1.25978 1.46165 1.17737 0.86339 0.81441 0.79468 1.90735 1.23471 1.76344 1.51134 1.20826 0.92430 0.94084 0.92442 1.67912 1.00532 1.22927 1.24799 1.22850 0.98258 0.89047 0.94641 1.21179 0.95346 1.02056 0.97198 1.19731 0.95677 0.90603 0.91346 1.83977 1.30164 1.48687 1.46036 1.24275 0.83335 0.97782 1.00883 1.22722 1.00713 0.98601 0.97311 1.20596 0.95985 0.97551 0.99705 1.21723 0.89632 0.89630 0.99941 1.21830 0.99355 0.93574 1.01960 1.20533 0.91279 0.87147 0.95233 0.96474 0.93841 0.94429 0.92882 0.92305 0.92221 0.91488 0.83915 0.80500 0.83349 0.76785 0.80903 0.91693 0.89356 0.90586 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.44 55.49 0.58 -26.62 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.18 9.88 -15.06 -0.15 -6.33 16 8 H 0.08 2.08 7.21 -52.49 -0.38 1.70 16 9 N -0.59 -15.11 3.35 -163.46 -0.55 -15.65 16 10 C 0.18 4.29 5.45 -1.92 -0.01 4.28 16 11 C -0.13 -2.44 6.54 -25.13 -0.16 -2.61 16 12 C -0.13 -2.26 2.85 -89.54 -0.26 -2.51 16 13 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.09 1.31 5.34 -3.76 -0.02 1.29 16 15 N -0.58 -9.21 3.00 -173.63 -0.52 -9.73 16 16 C 0.56 9.03 7.62 -12.35 -0.09 8.93 16 17 O -0.54 -9.48 14.60 5.30 0.08 -9.40 16 18 C 0.14 2.00 6.61 -82.80 -0.55 1.45 16 19 N -0.45 -5.35 6.03 -9.68 -0.06 -5.41 16 20 C 0.10 0.90 11.13 -17.56 -0.20 0.70 16 21 C -0.14 -1.11 10.13 -39.30 -0.40 -1.51 16 22 C 0.08 0.86 7.48 -38.29 -0.29 0.57 16 23 O -0.19 -1.82 10.57 4.95 0.05 -1.76 16 24 C 0.00 0.01 11.97 29.34 0.35 0.36 16 25 C -0.17 -1.88 10.32 -37.78 -0.39 -2.27 16 26 C -0.13 -1.70 6.16 -104.90 -0.65 -2.34 16 27 C 0.11 1.80 6.34 -3.50 -0.02 1.78 16 28 C -0.13 -2.37 5.48 -27.13 -0.15 -2.52 16 29 C 0.17 3.43 2.55 -68.30 -0.17 3.26 16 30 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 33 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 34 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.14 2.00 4.04 -86.78 -0.35 1.65 16 38 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.22 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.17 1.89 7.32 -52.49 -0.38 1.50 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 44 H 0.08 1.41 7.62 -51.93 -0.40 1.02 16 45 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -33.71 357.44 -9.29 -43.00 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.99 Total: 0.74 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.25 Total: 2.18 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.55 Total: -57.41 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.13 Total: -11.17 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.71 -9.29 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.459 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds