Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99589 * 2 1 4 4 H 1.48504 * 109.46974 * 274.31036 * 3 2 1 5 5 H 1.48498 * 109.47069 * 34.30561 * 3 2 1 6 6 H 1.48495 * 109.46821 * 154.31023 * 3 2 1 7 7 C 1.38804 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 206.10966 * 7 2 1 9 9 N 1.37355 * 120.00192 * 26.10553 * 7 2 1 10 10 C 1.44378 * 119.79483 * 12.78955 * 9 7 2 11 11 C 1.51734 * 112.26860 * 263.67096 * 10 9 7 12 12 C 1.51231 * 114.17122 * 289.47492 * 11 10 9 13 13 H 1.09336 * 111.22595 * 182.76263 * 12 11 10 14 14 C 1.54549 * 107.47495 * 304.66356 * 12 11 10 15 15 C 1.54313 * 103.85801 * 85.96952 * 14 12 11 16 16 C 1.50785 * 104.85958 * 17.79185 * 15 14 12 17 17 H 1.09958 * 108.33644 * 117.35304 * 16 15 14 18 18 C 1.50623 * 118.60029 * 192.68426 * 9 7 2 19 19 N 1.48747 * 109.04199 * 59.84757 * 12 11 10 20 20 C 1.34245 * 128.47857 * 95.69205 * 19 12 11 21 21 O 1.21661 * 119.99811 * 359.62133 * 20 19 12 22 22 C 1.46987 * 120.00645 * 179.61594 * 20 19 12 23 23 C 1.35845 * 125.12377 * 180.02562 * 22 20 19 24 24 C 1.46097 * 106.06930 * 179.97438 * 23 22 20 25 25 C 1.39451 * 135.07870 * 180.02562 * 24 23 22 26 26 N 1.31671 * 120.07893 * 179.97438 * 25 24 23 27 27 C 1.32310 * 122.14067 * 0.10881 * 26 25 24 28 28 C 1.37751 * 121.58483 * 359.85617 * 27 26 25 29 29 C 1.39250 * 118.95631 * 0.08301 * 28 27 26 30 30 O 1.34277 * 134.37861 * 179.97438 * 29 28 27 31 31 H 0.96996 * 120.00691 * 0.02562 * 1 2 3 32 32 H 1.10082 * 107.64788 * 21.62505 * 10 9 7 33 33 H 1.07841 * 111.48990 * 139.02568 * 10 9 7 34 34 H 1.09109 * 108.61688 * 51.13450 * 11 10 9 35 35 H 1.09256 * 108.35818 * 168.33540 * 11 10 9 36 36 H 1.09130 * 110.59381 * 204.61862 * 14 12 11 37 37 H 1.09071 * 110.67968 * 327.17909 * 14 12 11 38 38 H 1.08433 * 111.83976 * 255.50851 * 15 14 12 39 39 H 1.10038 * 109.08258 * 135.61367 * 15 14 12 40 40 H 1.08488 * 109.48325 * 30.37611 * 18 9 7 41 41 H 1.08722 * 109.13849 * 269.17063 * 18 9 7 42 42 H 1.07998 * 126.96445 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.95410 * 359.97438 * 25 24 23 44 44 H 1.08003 * 119.20978 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.52602 * 180.36386 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4064 2.0991 -1.3962 5 1 1.4960 2.6247 0.7891 6 1 3.5902 1.4157 0.6069 7 6 2.0103 -1.2020 -0.0005 8 1 3.0076 -1.2499 0.4111 9 7 1.4287 -2.3307 -0.5245 10 6 0.2264 -2.2170 -1.3157 11 6 -1.0267 -2.4628 -0.4962 12 6 -1.2147 -3.9013 -0.0687 13 1 -2.1538 -4.0330 0.4755 14 6 -1.1821 -4.7726 -1.3447 15 6 0.3202 -5.0462 -1.5672 16 6 0.9700 -4.7368 -0.2421 17 1 1.4262 -5.6600 0.1434 18 6 2.0731 -3.6652 -0.2552 19 7 -0.0515 -4.3173 0.7599 20 6 0.0611 -4.3246 2.0976 21 8 -0.8675 -3.9496 2.7883 22 6 1.3063 -4.7859 2.7278 23 6 1.5324 -4.8372 4.0664 24 6 2.8892 -5.3544 4.2278 25 6 3.7131 -5.6427 5.3153 26 7 4.9263 -6.1145 5.1173 27 6 5.4085 -6.3297 3.9041 28 6 4.6623 -6.0730 2.7751 29 6 3.3705 -5.5736 2.9199 30 8 2.3979 -5.2224 2.0634 31 1 -0.4851 0.8400 -0.0004 32 1 0.1733 -1.1852 -1.6957 33 1 0.2532 -2.8725 -2.1716 34 1 -0.9901 -1.8326 0.3937 35 1 -1.8918 -2.1603 -1.0910 36 1 -1.7226 -5.7071 -1.1853 37 1 -1.6042 -4.2309 -2.1920 38 1 0.7232 -4.4492 -2.3777 39 1 0.4594 -6.1090 -1.8161 40 1 2.5737 -3.6378 0.7069 41 1 2.7821 -3.8854 -1.0494 42 1 0.8478 -4.5533 4.8519 43 1 3.3556 -5.4786 6.3211 44 1 6.4107 -6.7177 3.7964 45 1 5.0708 -6.2605 1.7931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039401981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 66.701904 kcal Electronic energy + Delta-G solvation = -31428.788748 eV Core-core repulsion = 27414.768816 eV Total energy + Delta-G solvation = -4014.019933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71101 -40.15536 -38.99025 -37.79230 -34.73014 -32.99875 -32.60830 -31.74802 -31.41158 -30.65381 -29.75929 -27.14880 -25.92469 -24.83342 -23.74109 -23.37443 -22.29559 -21.28735 -20.95743 -19.53923 -19.06300 -18.05509 -17.49942 -16.58288 -16.45691 -16.00438 -15.72419 -15.41751 -15.00862 -14.70611 -14.56707 -14.21487 -13.70850 -13.55361 -13.50565 -13.29183 -13.21226 -13.06873 -12.89338 -12.59527 -12.18411 -11.67068 -11.49471 -11.33546 -11.28526 -10.91375 -10.72275 -10.63537 -10.45860 -10.36121 -10.15511 -10.02865 -9.93309 -9.83859 -9.70839 -9.44365 -8.99682 -8.50154 -8.35280 -8.05758 -6.82783 -5.76616 -3.09131 0.43042 1.15985 1.81313 2.37454 3.17695 3.38456 3.46841 3.47645 3.51072 3.64528 4.19118 4.29149 4.42322 4.49578 4.75948 4.83288 4.89513 4.94715 5.10593 5.15648 5.31158 5.36152 5.39920 5.55091 5.60616 5.64683 5.69313 5.79070 5.90778 6.03759 6.08702 6.09801 6.11593 6.18265 6.25499 6.33119 6.52201 6.57343 6.71697 6.77251 6.81448 6.98959 7.17599 7.59241 7.71875 7.77561 7.91685 8.11529 8.36786 8.40015 9.27351 9.83122 10.31038 11.25874 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.004841 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.680545 B = 5782.813262 C = 6984.769878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 0.894 3.106 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.144 4.144 12 C 0.137 3.863 13 H 0.080 0.920 14 C -0.126 4.126 15 C -0.115 4.115 16 C 0.119 3.881 17 H 0.063 0.937 18 C 0.134 3.866 19 N -0.577 5.577 20 C 0.621 3.379 21 O -0.526 6.526 22 C 0.006 3.994 23 C -0.115 4.115 24 C -0.193 4.193 25 C 0.170 3.830 26 N -0.497 5.497 27 C 0.109 3.891 28 C -0.157 4.157 29 C 0.098 3.902 30 O -0.167 6.167 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.016 0.984 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.174 0.826 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -14.579 1.030 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.197 4.197 3 Si 0.724 3.276 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.316 5.316 10 C 0.050 3.950 11 C -0.184 4.184 12 C 0.035 3.965 13 H 0.098 0.902 14 C -0.164 4.164 15 C -0.152 4.152 16 C 0.015 3.985 17 H 0.081 0.919 18 C 0.009 3.991 19 N -0.307 5.307 20 C 0.408 3.592 21 O -0.405 6.405 22 C -0.044 4.044 23 C -0.137 4.137 24 C -0.196 4.196 25 C 0.006 3.994 26 N -0.207 5.207 27 C -0.040 4.040 28 C -0.178 4.178 29 C 0.042 3.958 30 O -0.066 6.066 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.191 0.809 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.631 -14.455 1.833 15.017 hybrid contribution -0.088 1.220 -0.579 1.353 sum 3.543 -13.235 1.255 13.758 Atomic orbital electron populations 1.70142 1.04907 1.24950 1.53718 1.24704 0.95172 0.97977 1.01809 0.86382 0.79352 0.84339 0.77488 1.21643 1.22036 1.20741 1.19327 0.97036 0.86280 1.35363 0.91353 1.44690 1.27767 1.00423 1.58726 1.19887 0.84074 1.00776 0.90223 1.22163 0.99078 0.92321 1.04820 1.22026 0.88155 0.97026 0.89246 0.90200 1.22637 0.96020 0.99519 0.98239 1.21777 0.95718 1.01333 0.96405 1.22109 0.89712 0.97844 0.88873 0.91856 1.22204 0.92685 0.85433 0.98817 1.48832 1.17151 1.61310 1.03440 1.15720 0.83895 0.78953 0.80668 1.90865 1.37869 1.49786 1.61971 1.22292 0.87555 1.03147 0.91362 1.22582 0.94519 1.01230 0.95405 1.20947 0.96403 1.07039 0.95243 1.22397 0.87836 0.91193 0.97959 1.67772 1.13670 1.14121 1.25146 1.22536 0.99532 0.95612 0.86342 1.21031 0.90289 1.04437 1.02014 1.19950 0.90869 0.96963 0.87988 1.84226 1.20547 1.66842 1.35011 0.93848 0.90490 0.96640 0.87226 0.93812 0.91958 0.89750 0.89144 0.91721 0.92492 0.94924 0.80900 0.81834 0.81609 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 8.72 55.49 0.48 -24.26 16 2 C 0.00 0.03 4.73 -17.43 -0.08 -0.05 16 3 Si 0.89 21.73 29.63 -169.99 -5.04 16.69 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.74 9.63 -14.87 -0.14 -6.88 16 8 H 0.07 1.86 7.95 -52.49 -0.42 1.44 16 9 N -0.59 -13.99 2.88 -171.96 -0.49 -14.48 16 10 C 0.18 3.93 4.50 -5.82 -0.03 3.90 16 11 C -0.14 -3.08 4.38 -28.27 -0.12 -3.20 16 12 C 0.14 2.51 3.74 -66.77 -0.25 2.26 16 13 H 0.08 1.47 8.08 -51.74 -0.42 1.06 16 14 C -0.13 -1.76 6.06 -25.23 -0.15 -1.92 16 15 C -0.11 -1.59 5.57 -27.15 -0.15 -1.75 16 16 C 0.12 1.99 2.26 -67.18 -0.15 1.84 16 17 H 0.06 0.98 6.63 -51.38 -0.34 0.64 16 18 C 0.13 2.63 5.94 -1.31 -0.01 2.63 16 19 N -0.58 -11.04 2.50 -156.79 -0.39 -11.43 16 20 C 0.62 12.69 7.79 -12.95 -0.10 12.59 16 21 O -0.53 -12.04 17.23 5.22 0.09 -11.95 16 22 C 0.01 0.11 6.57 -36.90 -0.24 -0.13 16 23 C -0.12 -1.80 10.80 -37.29 -0.40 -2.20 16 24 C -0.19 -2.75 6.43 -105.22 -0.68 -3.42 16 25 C 0.17 2.07 11.28 -17.17 -0.19 1.88 16 26 N -0.50 -6.14 10.34 -13.00 -0.13 -6.27 16 27 C 0.11 1.16 11.13 -17.52 -0.20 0.97 16 28 C -0.16 -1.81 10.13 -39.38 -0.40 -2.20 16 29 C 0.10 1.43 7.48 -38.13 -0.29 1.15 16 30 O -0.17 -2.74 5.87 3.72 0.02 -2.71 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.08 1.98 5.92 -51.31 -0.30 1.67 16 33 H 0.02 0.31 4.79 -52.57 -0.25 0.06 16 34 H 0.11 2.93 6.23 -51.87 -0.32 2.60 16 35 H 0.04 0.88 8.16 -51.78 -0.42 0.46 16 36 H 0.06 0.76 8.15 -51.86 -0.42 0.34 16 37 H 0.08 1.10 7.79 -51.89 -0.40 0.70 16 38 H 0.09 1.29 6.13 -52.25 -0.32 0.97 16 39 H 0.06 0.73 8.23 -51.34 -0.42 0.31 16 40 H 0.06 1.20 5.58 -52.22 -0.29 0.91 16 41 H 0.03 0.60 8.12 -52.09 -0.42 0.18 16 42 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -31.71 349.22 -9.37 -41.08 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.59 Total: 2.62 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -3.58 Total: 5.45 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.54 Total: -56.45 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.11 Total: -14.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.71 -9.37 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039401981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.783 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds