Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48501 * 109.46960 * 239.99860 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47066 * 120.00019 * 3 2 1 7 7 C 1.38814 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99375 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00483 * 0.02562 * 7 2 1 10 10 C 1.48165 * 126.39832 * 359.97438 * 9 7 2 11 11 C 1.55300 * 107.04373 * 185.02179 * 10 9 7 12 12 C 1.53549 * 101.83978 * 22.47482 * 11 10 9 13 13 H 1.08999 * 111.72020 * 78.83780 * 12 11 10 14 14 C 1.51984 * 115.06103 * 206.60487 * 12 11 10 15 15 C 1.53885 * 107.35752 * 175.39672 * 14 12 11 16 16 N 1.46592 * 110.70960 * 308.14772 * 15 14 12 17 17 C 1.34774 * 119.75606 * 227.75048 * 16 15 14 18 18 O 1.21652 * 119.99863 * 358.10598 * 17 16 15 19 19 C 1.46982 * 120.00167 * 178.10551 * 17 16 15 20 20 C 1.35848 * 125.11984 * 187.94908 * 19 17 16 21 21 C 1.46106 * 106.07062 * 179.86319 * 20 19 17 22 22 C 1.39447 * 135.07835 * 180.08983 * 21 20 19 23 23 N 1.31671 * 120.07710 * 180.31094 * 22 21 20 24 24 C 1.32303 * 122.14220 * 359.97438 * 23 22 21 25 25 C 1.37757 * 121.58367 * 0.03014 * 24 23 22 26 26 C 1.39237 * 118.95610 * 359.97438 * 25 24 23 27 27 O 1.34284 * 134.38221 * 180.02562 * 26 25 24 28 28 C 1.47804 * 120.49325 * 47.72540 * 16 15 14 29 29 C 1.45503 * 126.40128 * 179.97438 * 9 7 2 30 30 H 1.08996 * 109.56918 * 265.82656 * 29 9 7 31 31 H 0.97006 * 119.99724 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.91817 * 304.37901 * 10 9 7 33 33 H 1.09002 * 109.91837 * 65.47627 * 10 9 7 34 34 H 1.09000 * 110.95634 * 140.57440 * 11 10 9 35 35 H 1.08992 * 110.95978 * 264.27961 * 11 10 9 36 36 H 1.08999 * 109.89239 * 55.90973 * 14 12 11 37 37 H 1.09004 * 109.88907 * 294.88435 * 14 12 11 38 38 H 1.09003 * 109.22572 * 68.46052 * 15 14 12 39 39 H 1.08995 * 109.22852 * 187.83119 * 15 14 12 40 40 H 1.08003 * 126.96468 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.95931 * 0.28176 * 22 21 20 42 42 H 1.08001 * 119.21387 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.52471 * 179.97438 * 25 24 23 44 44 H 1.08995 * 110.06255 * 67.97858 * 28 16 15 45 45 H 1.09002 * 110.06569 * 189.54962 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1469 -2.5532 0.0005 11 6 -0.4344 -4.0738 0.1305 12 6 0.8663 -4.5873 0.7648 13 1 0.8977 -4.3902 1.8364 14 6 1.1973 -6.0406 0.4679 15 6 2.5771 -6.3322 1.0836 16 7 3.5602 -5.3357 0.6483 17 6 4.7631 -5.7375 0.1924 18 8 5.0428 -6.9213 0.1757 19 6 5.7372 -4.7455 -0.2845 20 6 6.9106 -5.0374 -0.9036 21 6 7.5430 -3.7536 -1.1978 22 6 8.7320 -3.3553 -1.8079 23 7 9.0218 -2.0755 -1.9161 24 6 8.2154 -1.1303 -1.4614 25 6 7.0215 -1.4353 -0.8455 26 6 6.6596 -2.7721 -0.7012 27 8 5.6027 -3.4068 -0.1689 28 6 3.2417 -3.8935 0.7050 29 6 1.9080 -3.7214 0.0005 30 1 1.9857 -4.0859 -1.0237 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5804 -2.0195 0.8463 33 1 -0.5633 -2.1718 -0.9318 34 1 -1.2855 -4.2549 0.7869 35 1 -0.5964 -4.5250 -0.8483 36 1 1.2308 -6.2007 -0.6098 37 1 0.4462 -6.6910 0.9161 38 1 2.4977 -6.3071 2.1705 39 1 2.9076 -7.3227 0.7712 40 1 7.2968 -6.0194 -1.1336 41 1 9.4163 -4.0976 -2.1917 42 1 8.4999 -0.0947 -1.5757 43 1 6.3763 -0.6499 -0.4802 44 1 3.1616 -3.5687 1.7423 45 1 4.0127 -3.3197 0.1907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042133621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = 57.795599 kcal Electronic energy + Delta-G solvation = -30494.140128 eV Core-core repulsion = 26479.733989 eV Total energy + Delta-G solvation = -4014.406139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.88222 -40.23805 -39.03838 -38.37266 -35.43181 -33.29139 -33.04557 -31.92857 -31.41981 -30.08460 -29.31509 -28.55506 -25.60163 -24.40837 -24.06249 -23.23959 -22.40245 -21.58374 -20.48145 -20.03528 -19.51634 -18.36033 -17.70300 -16.85878 -16.67369 -16.13600 -15.71953 -15.50887 -15.07522 -14.90436 -14.68764 -14.47753 -14.09954 -14.01688 -13.67270 -13.58277 -13.51972 -13.34792 -12.88703 -12.55097 -12.14410 -11.99415 -11.74695 -11.58952 -11.37623 -10.96977 -10.89171 -10.78275 -10.53342 -10.47022 -10.21766 -10.04158 -9.92399 -9.86772 -9.72868 -9.56517 -9.44835 -8.76533 -8.70128 -8.44457 -6.94610 -5.79980 -3.14314 0.29830 1.11167 1.60547 2.19233 2.89729 3.07386 3.33014 3.36839 3.39508 3.59403 4.03123 4.21749 4.30622 4.42694 4.69575 4.73458 4.87867 4.93911 5.07321 5.09883 5.20848 5.31035 5.47381 5.51336 5.53871 5.56303 5.64343 5.71686 5.74703 5.77362 5.95757 5.97319 6.01262 6.04358 6.14696 6.19913 6.29560 6.42396 6.49910 6.53584 6.68970 6.78462 6.93858 7.26824 7.46706 7.53032 7.72868 7.73636 7.92888 8.14876 9.09720 9.72946 10.40203 11.32107 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.005385 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.181199 B = 5198.124988 C = 8282.368947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.114 4.114 13 H 0.078 0.922 14 C -0.120 4.120 15 C 0.113 3.887 16 N -0.590 5.590 17 C 0.595 3.405 18 O -0.528 6.528 19 C -0.019 4.019 20 C -0.102 4.102 21 C -0.199 4.199 22 C 0.169 3.831 23 N -0.495 5.495 24 C 0.114 3.886 25 C -0.154 4.154 26 C 0.098 3.902 27 O -0.159 6.159 28 C 0.092 3.908 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.254 0.746 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.174 0.826 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.151 0.849 44 H 0.078 0.922 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.923 -9.340 0.094 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.009 4.009 16 N -0.321 5.321 17 C 0.381 3.619 18 O -0.407 6.407 19 C -0.068 4.068 20 C -0.124 4.124 21 C -0.203 4.203 22 C 0.005 3.995 23 N -0.205 5.205 24 C -0.036 4.036 25 C -0.175 4.175 26 C 0.043 3.957 27 O -0.059 6.059 28 C -0.030 4.030 29 C 0.047 3.953 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.192 0.808 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.168 0.832 44 H 0.097 0.903 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.459 -9.242 -0.144 13.958 hybrid contribution -0.461 0.817 0.371 1.009 sum 9.997 -8.425 0.227 13.076 Atomic orbital electron populations 1.69930 1.04890 1.25274 1.56479 1.24784 0.95670 0.97604 1.01993 0.86274 0.78675 0.83386 0.77933 1.21047 1.21508 1.21033 1.18917 0.90219 0.82250 1.44496 0.90525 1.44153 1.01703 0.99025 1.86709 1.21558 0.83520 0.88539 1.01090 1.22684 0.95974 0.99561 0.99333 1.22310 0.97400 0.93462 1.00216 0.90363 1.21824 0.95215 0.97384 1.01385 1.21686 0.88173 0.92015 0.99016 1.48250 1.13509 1.08877 1.61440 1.16840 0.80989 0.86071 0.77953 1.90841 1.77644 1.15185 1.57026 1.22172 0.98154 0.80943 1.05524 1.22600 0.92718 0.97981 0.99144 1.20938 0.99062 0.93489 1.06769 1.22398 0.92149 0.92812 0.92143 1.67783 1.32934 1.00796 1.19027 1.22604 0.88939 0.99405 0.92619 1.21205 0.99543 0.92470 1.04235 1.20166 0.86535 0.94401 0.94622 1.84447 1.37778 1.17743 1.65947 1.22597 1.00257 0.77604 1.02504 1.21011 0.90708 0.87926 0.95621 0.95850 0.93605 0.92564 0.94327 0.92114 0.92478 0.91349 0.90538 0.91338 0.89069 0.80849 0.81828 0.81389 0.83171 0.90330 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.43 55.49 0.58 -25.37 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.02 9.88 -15.06 -0.15 -6.17 16 8 H 0.08 1.92 7.41 -52.49 -0.39 1.53 16 9 N -0.59 -14.17 3.35 -162.79 -0.54 -14.72 16 10 C 0.18 4.09 5.45 -1.91 -0.01 4.08 16 11 C -0.14 -2.42 6.54 -25.23 -0.16 -2.58 16 12 C -0.11 -1.88 2.62 -89.50 -0.23 -2.12 16 13 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 14 C -0.12 -1.58 5.72 -26.79 -0.15 -1.73 16 15 C 0.11 1.50 6.33 -3.53 -0.02 1.48 16 16 N -0.59 -9.17 3.01 -174.16 -0.52 -9.69 16 17 C 0.59 9.46 7.65 -12.72 -0.10 9.37 16 18 O -0.53 -8.99 16.18 5.23 0.08 -8.90 16 19 C -0.02 -0.28 6.79 -36.90 -0.25 -0.53 16 20 C -0.10 -1.32 10.81 -37.28 -0.40 -1.72 16 21 C -0.20 -2.59 6.43 -105.21 -0.68 -3.27 16 22 C 0.17 1.91 11.28 -17.17 -0.19 1.72 16 23 N -0.50 -6.07 10.34 -13.00 -0.13 -6.21 16 24 C 0.11 1.30 11.13 -17.52 -0.20 1.10 16 25 C -0.15 -1.99 10.13 -39.39 -0.40 -2.39 16 26 C 0.10 1.43 7.48 -38.13 -0.29 1.15 16 27 O -0.16 -2.54 6.86 3.70 0.03 -2.51 16 28 C 0.09 1.61 5.48 -3.93 -0.02 1.59 16 29 C 0.16 3.06 2.77 -67.73 -0.19 2.87 16 30 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 1.44 7.21 -51.93 -0.37 1.06 16 33 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 36 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.18 6.97 -51.93 -0.36 0.82 16 40 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.11 2.08 3.54 -55.80 -0.20 1.88 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -30.72 361.12 -9.55 -40.27 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.91 Total: 3.00 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.54 Total: 2.64 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.62 Total: -55.99 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.11 Total: -11.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.72 -9.55 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.067 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds