Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48501 * 109.46960 * 239.99860 * 3 2 1 5 5 H 1.48501 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47066 * 120.00019 * 3 2 1 7 7 C 1.38814 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99375 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00483 * 0.02562 * 7 2 1 10 10 C 1.48165 * 126.39832 * 359.97438 * 9 7 2 11 11 C 1.55300 * 107.04373 * 185.02179 * 10 9 7 12 12 C 1.53549 * 101.83978 * 22.47482 * 11 10 9 13 13 H 1.08999 * 111.72020 * 78.83780 * 12 11 10 14 14 C 1.51984 * 115.06103 * 206.60487 * 12 11 10 15 15 C 1.53885 * 107.35752 * 175.39672 * 14 12 11 16 16 N 1.46592 * 110.70960 * 308.14772 * 15 14 12 17 17 C 1.34774 * 119.75606 * 227.75048 * 16 15 14 18 18 O 1.21652 * 119.99863 * 358.10598 * 17 16 15 19 19 C 1.46982 * 120.00167 * 178.10551 * 17 16 15 20 20 C 1.35848 * 125.11984 * 187.94908 * 19 17 16 21 21 C 1.46106 * 106.07062 * 179.86319 * 20 19 17 22 22 C 1.39447 * 135.07835 * 180.08983 * 21 20 19 23 23 N 1.31671 * 120.07710 * 180.31094 * 22 21 20 24 24 C 1.32303 * 122.14220 * 359.97438 * 23 22 21 25 25 C 1.37757 * 121.58367 * 0.03014 * 24 23 22 26 26 C 1.39237 * 118.95610 * 359.97438 * 25 24 23 27 27 O 1.34284 * 134.38221 * 180.02562 * 26 25 24 28 28 C 1.47804 * 120.49325 * 47.72540 * 16 15 14 29 29 C 1.45503 * 126.40128 * 179.97438 * 9 7 2 30 30 H 1.08996 * 109.56918 * 265.82656 * 29 9 7 31 31 H 0.97006 * 119.99724 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.91817 * 304.37901 * 10 9 7 33 33 H 1.09002 * 109.91837 * 65.47627 * 10 9 7 34 34 H 1.09000 * 110.95634 * 140.57440 * 11 10 9 35 35 H 1.08992 * 110.95978 * 264.27961 * 11 10 9 36 36 H 1.08999 * 109.89239 * 55.90973 * 14 12 11 37 37 H 1.09004 * 109.88907 * 294.88435 * 14 12 11 38 38 H 1.09003 * 109.22572 * 68.46052 * 15 14 12 39 39 H 1.08995 * 109.22852 * 187.83119 * 15 14 12 40 40 H 1.08003 * 126.96468 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.95931 * 0.28176 * 22 21 20 42 42 H 1.08001 * 119.21387 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.52471 * 179.97438 * 25 24 23 44 44 H 1.08995 * 110.06255 * 67.97858 * 28 16 15 45 45 H 1.09002 * 110.06569 * 189.54962 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1469 -2.5532 0.0005 11 6 -0.4344 -4.0738 0.1305 12 6 0.8663 -4.5873 0.7648 13 1 0.8977 -4.3902 1.8364 14 6 1.1973 -6.0406 0.4679 15 6 2.5771 -6.3322 1.0836 16 7 3.5602 -5.3357 0.6483 17 6 4.7631 -5.7375 0.1924 18 8 5.0428 -6.9213 0.1757 19 6 5.7372 -4.7455 -0.2845 20 6 6.9106 -5.0374 -0.9036 21 6 7.5430 -3.7536 -1.1978 22 6 8.7320 -3.3553 -1.8079 23 7 9.0218 -2.0755 -1.9161 24 6 8.2154 -1.1303 -1.4614 25 6 7.0215 -1.4353 -0.8455 26 6 6.6596 -2.7721 -0.7012 27 8 5.6027 -3.4068 -0.1689 28 6 3.2417 -3.8935 0.7050 29 6 1.9080 -3.7214 0.0005 30 1 1.9857 -4.0859 -1.0237 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5804 -2.0195 0.8463 33 1 -0.5633 -2.1718 -0.9318 34 1 -1.2855 -4.2549 0.7869 35 1 -0.5964 -4.5250 -0.8483 36 1 1.2308 -6.2007 -0.6098 37 1 0.4462 -6.6910 0.9161 38 1 2.4977 -6.3071 2.1705 39 1 2.9076 -7.3227 0.7712 40 1 7.2968 -6.0194 -1.1336 41 1 9.4163 -4.0976 -2.1917 42 1 8.4999 -0.0947 -1.5757 43 1 6.3763 -0.6499 -0.4802 44 1 3.1616 -3.5687 1.7423 45 1 4.0127 -3.3197 0.1907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042133621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 39.583398 kcal Electronic energy + Delta-G solvation = -30494.929869 eV Core-core repulsion = 26479.733989 eV Total energy + Delta-G solvation = -4015.195879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.93726 -41.49772 -40.08699 -39.73272 -36.88779 -34.84507 -34.11987 -33.28640 -32.66753 -31.29010 -30.70614 -30.13272 -26.94948 -26.03561 -25.32385 -24.35900 -23.57281 -22.68324 -21.85766 -21.65974 -20.81722 -19.42596 -18.88306 -18.61766 -17.80855 -17.35641 -16.84567 -16.71627 -16.58674 -16.29379 -15.91239 -15.71528 -15.52273 -15.29379 -15.09510 -14.84983 -14.49925 -14.48337 -14.09192 -13.88162 -13.80449 -13.42185 -13.16375 -13.08701 -12.71000 -12.63872 -12.54660 -12.14389 -12.04180 -11.87047 -11.60091 -11.52993 -11.52173 -11.35251 -10.99223 -10.77932 -10.70607 -10.55632 -9.96486 -9.49020 -8.91989 -7.84853 -5.20484 -0.70464 0.10478 0.57556 1.13868 1.44789 1.47717 1.53521 1.72257 1.90046 2.49224 2.65556 2.92371 3.28138 3.33835 3.39105 3.46766 3.66593 3.74263 3.83471 3.89496 3.96433 4.02578 4.18885 4.25105 4.26741 4.33200 4.46505 4.55740 4.57191 4.61652 4.68133 4.76674 4.83353 4.87298 5.01479 5.04110 5.07758 5.10466 5.11589 5.31947 5.38147 5.47388 5.52377 5.64583 5.71285 5.77334 6.02609 6.18511 6.72623 6.81214 7.07093 7.75974 8.43829 9.26101 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.005385 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.181199 B = 5198.124988 C = 8282.368947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.610 5.610 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.108 4.108 15 C 0.109 3.891 16 N -0.591 5.591 17 C 0.596 3.404 18 O -0.541 6.541 19 C -0.055 4.055 20 C -0.076 4.076 21 C -0.210 4.210 22 C 0.181 3.819 23 N -0.508 5.508 24 C 0.125 3.875 25 C -0.174 4.174 26 C 0.073 3.927 27 O -0.180 6.180 28 C 0.104 3.896 29 C 0.149 3.851 30 H 0.009 0.991 31 H 0.246 0.754 32 H 0.023 0.977 33 H 0.000 1.000 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.200 0.800 41 H 0.201 0.799 42 H 0.200 0.800 43 H 0.151 0.849 44 H 0.072 0.928 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.865 -10.946 0.035 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.146 4.146 15 C -0.012 4.012 16 N -0.321 5.321 17 C 0.384 3.616 18 O -0.422 6.422 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.213 4.213 22 C 0.017 3.983 23 N -0.219 5.219 24 C -0.024 4.024 25 C -0.195 4.195 26 C 0.019 3.981 27 O -0.081 6.081 28 C -0.018 4.018 29 C 0.041 3.959 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.217 0.783 41 H 0.218 0.782 42 H 0.216 0.784 43 H 0.169 0.831 44 H 0.091 0.909 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.424 -10.892 -0.200 16.523 hybrid contribution -0.954 1.327 0.318 1.665 sum 11.469 -9.565 0.118 14.935 Atomic orbital electron populations 1.70155 1.06255 1.25242 1.58210 1.25580 0.96498 1.00792 1.02715 0.85303 0.77429 0.79205 0.78452 1.20130 1.22352 1.19891 1.19273 0.90714 0.83376 1.42891 0.90072 1.44410 1.02390 1.00237 1.86496 1.21352 0.83092 0.92170 0.97714 1.22560 0.97535 0.95127 1.00797 1.22239 0.95106 0.95131 0.99499 0.90392 1.21781 0.96089 0.95182 1.01541 1.21896 0.87554 0.91699 1.00066 1.48250 1.14100 1.08173 1.61601 1.16904 0.81058 0.86080 0.77528 1.90820 1.77961 1.15598 1.57797 1.22190 0.99333 0.80758 1.08078 1.22951 0.91355 0.98963 0.96517 1.21117 0.99633 0.93048 1.07521 1.23004 0.91673 0.93288 0.90333 1.67915 1.33139 1.01283 1.19524 1.23114 0.87828 1.00781 0.90675 1.21413 1.00531 0.92041 1.05489 1.20619 0.86774 0.95559 0.95189 1.84345 1.38755 1.18276 1.66753 1.22261 0.98856 0.79088 1.01566 1.21127 0.92926 0.86335 0.95528 0.97344 0.94498 0.95828 0.98143 0.89662 0.91296 0.91714 0.86972 0.89678 0.88179 0.78325 0.78210 0.78377 0.83086 0.90941 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 10.43 21.65 0.23 -55.88 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.23 -12.59 9.88 84.04 0.83 -11.76 16 8 H 0.08 4.18 7.41 -2.91 -0.02 4.16 16 9 N -0.61 -30.26 3.35 -668.96 -2.24 -32.49 16 10 C 0.18 8.72 5.45 86.85 0.47 9.19 16 11 C -0.12 -4.20 6.54 31.57 0.21 -4.00 16 12 C -0.10 -3.17 2.62 -10.07 -0.03 -3.19 16 13 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 14 C -0.11 -2.54 5.72 30.56 0.17 -2.36 16 15 C 0.11 2.63 6.33 86.66 0.55 3.18 16 16 N -0.59 -17.86 3.01 -823.15 -2.48 -20.34 16 17 C 0.60 18.53 7.65 86.53 0.66 19.19 16 18 O -0.54 -17.65 16.18 -4.19 -0.07 -17.72 16 19 C -0.06 -1.65 6.79 24.01 0.16 -1.48 16 20 C -0.08 -1.84 10.81 23.76 0.26 -1.59 16 21 C -0.21 -5.13 6.43 -20.25 -0.13 -5.26 16 22 C 0.18 3.60 11.28 85.01 0.96 4.56 16 23 N -0.51 -11.19 10.34 -195.04 -2.02 -13.21 16 24 C 0.12 2.62 11.13 84.51 0.94 3.56 16 25 C -0.17 -4.41 10.13 22.40 0.23 -4.19 16 26 C 0.07 2.13 7.48 23.21 0.17 2.30 16 27 O -0.18 -5.86 6.86 -9.67 -0.07 -5.92 16 28 C 0.10 3.70 5.48 85.74 0.47 4.17 16 29 C 0.15 5.88 2.77 45.66 0.13 6.01 16 30 H 0.01 0.39 7.90 -2.39 -0.02 0.37 16 31 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 32 H 0.02 1.27 7.21 -2.39 -0.02 1.25 16 33 H 0.00 0.02 7.76 -2.39 -0.02 0.00 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 36 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.32 6.97 -2.39 -0.02 2.30 16 40 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.10 3.96 3.54 -63.77 -0.23 3.73 16 Total: -1.00 -69.69 361.12 2.71 -66.98 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.80 Total: 16.93 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.52 Total: 15.30 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -6.51 Total: -121.92 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.13 Total: -23.65 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.69 2.71 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.566 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds