Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48497 * 109.47211 * 269.99941 * 3 2 1 5 5 H 1.48509 * 109.47408 * 29.99838 * 3 2 1 6 6 H 1.48504 * 109.47346 * 149.99462 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00151 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.47436 * 126.06063 * 0.02562 * 9 7 2 11 11 C 1.54503 * 107.14888 * 181.60288 * 10 9 7 12 12 C 1.56028 * 102.61022 * 22.84301 * 11 10 9 13 13 H 1.09006 * 112.85684 * 202.93739 * 12 11 10 14 14 C 1.53095 * 106.39886 * 78.38546 * 12 11 10 15 15 C 1.52837 * 110.57071 * 195.41793 * 14 12 11 16 16 N 1.47067 * 107.95931 * 57.34684 * 15 14 12 17 17 C 1.34771 * 121.16365 * 122.74798 * 16 15 14 18 18 O 1.21655 * 120.00399 * 352.78557 * 17 16 15 19 19 C 1.46984 * 120.00087 * 172.78377 * 17 16 15 20 20 C 1.35848 * 125.12134 * 172.20391 * 19 17 16 21 21 C 1.46100 * 106.06946 * 179.97438 * 20 19 17 22 22 C 1.39441 * 135.07339 * 180.02562 * 21 20 19 23 23 N 1.31681 * 120.07650 * 180.02562 * 22 21 20 24 24 C 1.32307 * 122.13888 * 359.91287 * 23 22 21 25 25 C 1.37754 * 121.58513 * 0.06644 * 24 23 22 26 26 C 1.39237 * 118.95664 * 359.97438 * 25 24 23 27 27 O 1.34278 * 134.38245 * 180.34908 * 26 25 24 28 28 C 1.46760 * 117.62104 * 302.68943 * 16 15 14 29 29 C 1.46467 * 126.06056 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.41929 * 269.26514 * 29 9 7 31 31 H 0.97003 * 119.99979 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.90466 * 300.98185 * 10 9 7 33 33 H 1.09004 * 109.90351 * 62.22637 * 10 9 7 34 34 H 1.08994 * 110.78194 * 141.12028 * 11 10 9 35 35 H 1.08997 * 110.78413 * 264.56487 * 11 10 9 36 36 H 1.08996 * 109.25146 * 315.69867 * 14 12 11 37 37 H 1.08997 * 109.25575 * 75.17008 * 14 12 11 38 38 H 1.09001 * 109.75759 * 176.97544 * 15 14 12 39 39 H 1.08997 * 109.75728 * 297.67697 * 15 14 12 40 40 H 1.08003 * 126.96436 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.96593 * 359.96632 * 22 21 20 42 42 H 1.08003 * 119.20711 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.52481 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.22866 * 292.23591 * 28 16 15 45 45 H 1.09003 * 109.22718 * 172.83097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1406 -2.5437 -0.0005 11 6 -0.4379 -4.0593 0.0412 12 6 0.8713 -4.6465 0.6540 13 1 1.0211 -5.6972 0.4054 14 6 0.7949 -4.3920 2.1618 15 6 2.1677 -4.5758 2.8077 16 7 3.1073 -3.6590 2.1448 17 6 3.7994 -2.7410 2.8481 18 8 3.5582 -2.5702 4.0283 19 6 4.8456 -1.9460 2.1894 20 6 5.5000 -0.8965 2.7513 21 6 6.4413 -0.4191 1.7411 22 6 7.3885 0.6023 1.6787 23 7 8.1000 0.7765 0.5844 24 6 7.9525 0.0061 -0.4811 25 6 7.0402 -1.0258 -0.5047 26 6 6.2575 -1.2595 0.6229 27 8 5.3057 -2.1532 0.9367 28 6 3.2650 -3.7805 0.6908 29 6 1.9198 -3.7268 0.0005 30 1 2.0474 -4.0469 -1.0336 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5660 -2.0578 0.8776 33 1 -0.5593 -2.1083 -0.9079 34 1 -1.2931 -4.2680 0.6838 35 1 -0.6033 -4.4488 -0.9633 36 1 0.4485 -3.3735 2.3372 37 1 0.0907 -5.0932 2.6094 38 1 2.1096 -4.3397 3.8703 39 1 2.5016 -5.6051 2.6769 40 1 5.3540 -0.4962 3.7437 41 1 7.5382 1.2518 2.5284 42 1 8.5616 0.1911 -1.3536 43 1 6.9337 -1.6438 -1.3839 44 1 3.7489 -4.7295 0.4603 45 1 3.8875 -2.9627 0.3276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042133622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 53.788807 kcal Electronic energy + Delta-G solvation = -31477.638327 eV Core-core repulsion = 27463.058440 eV Total energy + Delta-G solvation = -4014.579887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.66392 -40.02252 -38.89507 -38.17242 -35.05897 -33.16678 -32.88064 -31.76024 -31.29534 -29.94030 -29.06043 -28.51020 -25.44627 -24.30012 -24.05462 -23.21842 -22.52631 -21.56333 -20.35619 -20.03882 -18.84506 -18.12049 -17.55592 -16.63675 -16.47493 -16.01330 -15.63271 -15.35349 -14.95526 -14.72340 -14.44475 -14.35693 -14.09308 -13.92879 -13.55814 -13.40047 -13.31607 -13.04758 -12.72274 -12.59298 -12.06697 -11.65280 -11.59739 -11.48561 -11.29434 -10.95328 -10.89561 -10.78784 -10.33155 -10.21134 -10.15130 -9.89396 -9.79722 -9.73961 -9.68900 -9.59010 -9.33803 -8.63642 -8.48862 -8.19265 -6.86583 -5.75788 -3.08096 0.50211 1.26222 1.84719 2.41899 3.13587 3.35379 3.42250 3.42720 3.44981 3.73895 4.27149 4.38317 4.44619 4.51948 4.87436 4.94017 5.00010 5.09917 5.21101 5.29449 5.37652 5.43669 5.51236 5.62065 5.63430 5.67970 5.70948 5.74607 5.84812 5.90815 5.98597 6.11934 6.17548 6.20275 6.23042 6.33628 6.39544 6.49030 6.57888 6.61764 6.87982 6.92429 6.95836 7.50195 7.57110 7.61722 7.78146 7.86892 8.20323 8.25066 9.16362 9.78330 10.44599 11.36220 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.005531 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.047705 B = 5060.889753 C = 6297.692278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.073 0.927 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.143 4.143 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.122 4.122 15 C 0.116 3.884 16 N -0.579 5.579 17 C 0.609 3.391 18 O -0.528 6.528 19 C 0.002 3.998 20 C -0.109 4.109 21 C -0.192 4.192 22 C 0.169 3.831 23 N -0.497 5.497 24 C 0.110 3.890 25 C -0.157 4.157 26 C 0.099 3.901 27 O -0.165 6.165 28 C 0.095 3.905 29 C 0.154 3.846 30 H 0.030 0.970 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.146 0.854 44 H 0.062 0.938 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -8.483 1.371 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.198 4.198 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.091 0.909 9 N -0.315 5.315 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.123 4.123 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.006 4.006 16 N -0.310 5.310 17 C 0.396 3.604 18 O -0.407 6.407 19 C -0.047 4.047 20 C -0.131 4.131 21 C -0.196 4.196 22 C 0.006 3.994 23 N -0.207 5.207 24 C -0.040 4.040 25 C -0.178 4.178 26 C 0.043 3.957 27 O -0.065 6.065 28 C -0.027 4.027 29 C 0.046 3.954 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.190 0.810 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.080 0.920 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.155 -7.743 1.710 12.884 hybrid contribution -0.392 0.437 -0.189 0.617 sum 9.763 -7.306 1.521 12.289 Atomic orbital electron populations 1.69937 1.04735 1.24947 1.56823 1.24684 0.95563 0.97306 1.02228 0.86332 0.78943 0.84297 0.77684 1.21557 1.21491 1.20654 1.18824 0.90039 0.82210 1.43917 0.90899 1.44252 1.01537 0.99067 1.86596 1.21223 0.84091 0.88427 1.00873 1.23160 0.96140 0.99608 0.99262 1.22413 0.97122 0.97777 0.94947 0.90494 1.21829 0.95609 1.03587 0.94989 1.21608 0.89043 0.91820 0.98086 1.47699 1.40971 1.33730 1.08565 1.16571 0.79724 0.78750 0.85359 1.90825 1.67758 1.67172 1.14922 1.22096 0.99368 1.00333 0.82951 1.22574 0.94983 0.95279 1.00254 1.20926 1.02105 1.01047 0.95480 1.22383 0.88579 0.92716 0.95759 1.67761 1.25448 1.27383 1.00138 1.22534 0.95074 0.89880 0.96533 1.21034 0.97779 1.02124 0.96842 1.20021 0.90068 0.89764 0.95801 1.84269 1.44364 1.48124 1.29741 1.22043 0.99719 1.02374 0.78612 1.20699 0.90771 0.88087 0.95872 0.95316 0.93777 0.93596 0.94048 0.92170 0.92680 0.89949 0.91760 0.89272 0.91507 0.80982 0.81889 0.81600 0.83638 0.91998 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.38 55.49 0.58 -26.10 16 2 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -5.88 9.70 -15.06 -0.15 -6.03 16 8 H 0.07 1.91 6.08 -52.49 -0.32 1.59 16 9 N -0.59 -13.98 3.20 -164.39 -0.53 -14.50 16 10 C 0.18 4.14 4.61 -2.74 -0.01 4.13 16 11 C -0.14 -2.52 6.33 -24.32 -0.15 -2.67 16 12 C -0.10 -1.65 3.68 -88.42 -0.33 -1.97 16 13 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.94 5.04 -26.77 -0.13 -2.07 16 15 C 0.12 1.76 6.44 -3.82 -0.02 1.74 16 16 N -0.58 -10.25 2.97 -175.58 -0.52 -10.77 16 17 C 0.61 11.78 7.67 -12.72 -0.10 11.69 16 18 O -0.53 -11.06 16.32 5.23 0.09 -10.97 16 19 C 0.00 0.03 6.73 -36.90 -0.25 -0.21 16 20 C -0.11 -1.82 10.81 -37.29 -0.40 -2.23 16 21 C -0.19 -3.08 6.43 -105.22 -0.68 -3.75 16 22 C 0.17 2.37 11.28 -17.17 -0.19 2.18 16 23 N -0.50 -7.00 10.34 -13.00 -0.13 -7.13 16 24 C 0.11 1.35 11.13 -17.52 -0.20 1.16 16 25 C -0.16 -2.09 10.13 -39.39 -0.40 -2.49 16 26 C 0.10 1.61 7.48 -38.13 -0.29 1.32 16 27 O -0.16 -2.89 6.71 3.69 0.02 -2.86 16 28 C 0.10 1.64 5.34 -4.76 -0.03 1.62 16 29 C 0.15 2.91 2.97 -68.28 -0.20 2.71 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.05 1.20 7.04 -51.93 -0.37 0.84 16 33 H 0.04 1.08 7.57 -51.93 -0.39 0.68 16 34 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.65 6.85 -51.93 -0.36 1.30 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.39 7.06 -51.93 -0.37 1.03 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 41 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.11 2.04 2.85 -52.86 -0.15 1.89 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -32.50 356.85 -9.49 -41.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.73 Total: 2.39 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.62 Total: 4.99 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.60 Total: -58.50 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.11 Total: -13.83 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.50 -9.49 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.780 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds