Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48497 * 109.47211 * 269.99941 * 3 2 1 5 5 H 1.48509 * 109.47408 * 29.99838 * 3 2 1 6 6 H 1.48504 * 109.47346 * 149.99462 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00151 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.47436 * 126.06063 * 0.02562 * 9 7 2 11 11 C 1.54503 * 107.14888 * 181.60288 * 10 9 7 12 12 C 1.56028 * 102.61022 * 22.84301 * 11 10 9 13 13 H 1.09006 * 112.85684 * 202.93739 * 12 11 10 14 14 C 1.53095 * 106.39886 * 78.38546 * 12 11 10 15 15 C 1.52837 * 110.57071 * 195.41793 * 14 12 11 16 16 N 1.47067 * 107.95931 * 57.34684 * 15 14 12 17 17 C 1.34771 * 121.16365 * 122.74798 * 16 15 14 18 18 O 1.21655 * 120.00399 * 352.78557 * 17 16 15 19 19 C 1.46984 * 120.00087 * 172.78377 * 17 16 15 20 20 C 1.35848 * 125.12134 * 172.20391 * 19 17 16 21 21 C 1.46100 * 106.06946 * 179.97438 * 20 19 17 22 22 C 1.39441 * 135.07339 * 180.02562 * 21 20 19 23 23 N 1.31681 * 120.07650 * 180.02562 * 22 21 20 24 24 C 1.32307 * 122.13888 * 359.91287 * 23 22 21 25 25 C 1.37754 * 121.58513 * 0.06644 * 24 23 22 26 26 C 1.39237 * 118.95664 * 359.97438 * 25 24 23 27 27 O 1.34278 * 134.38245 * 180.34908 * 26 25 24 28 28 C 1.46760 * 117.62104 * 302.68943 * 16 15 14 29 29 C 1.46467 * 126.06056 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.41929 * 269.26514 * 29 9 7 31 31 H 0.97003 * 119.99979 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.90466 * 300.98185 * 10 9 7 33 33 H 1.09004 * 109.90351 * 62.22637 * 10 9 7 34 34 H 1.08994 * 110.78194 * 141.12028 * 11 10 9 35 35 H 1.08997 * 110.78413 * 264.56487 * 11 10 9 36 36 H 1.08996 * 109.25146 * 315.69867 * 14 12 11 37 37 H 1.08997 * 109.25575 * 75.17008 * 14 12 11 38 38 H 1.09001 * 109.75759 * 176.97544 * 15 14 12 39 39 H 1.08997 * 109.75728 * 297.67697 * 15 14 12 40 40 H 1.08003 * 126.96436 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.96593 * 359.96632 * 22 21 20 42 42 H 1.08003 * 119.20711 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.52481 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.22866 * 292.23591 * 28 16 15 45 45 H 1.09003 * 109.22718 * 172.83097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1406 -2.5437 -0.0005 11 6 -0.4379 -4.0593 0.0412 12 6 0.8713 -4.6465 0.6540 13 1 1.0211 -5.6972 0.4054 14 6 0.7949 -4.3920 2.1618 15 6 2.1677 -4.5758 2.8077 16 7 3.1073 -3.6590 2.1448 17 6 3.7994 -2.7410 2.8481 18 8 3.5582 -2.5702 4.0283 19 6 4.8456 -1.9460 2.1894 20 6 5.5000 -0.8965 2.7513 21 6 6.4413 -0.4191 1.7411 22 6 7.3885 0.6023 1.6787 23 7 8.1000 0.7765 0.5844 24 6 7.9525 0.0061 -0.4811 25 6 7.0402 -1.0258 -0.5047 26 6 6.2575 -1.2595 0.6229 27 8 5.3057 -2.1532 0.9367 28 6 3.2650 -3.7805 0.6908 29 6 1.9198 -3.7268 0.0005 30 1 2.0474 -4.0469 -1.0336 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5660 -2.0578 0.8776 33 1 -0.5593 -2.1083 -0.9079 34 1 -1.2931 -4.2680 0.6838 35 1 -0.6033 -4.4488 -0.9633 36 1 0.4485 -3.3735 2.3372 37 1 0.0907 -5.0932 2.6094 38 1 2.1096 -4.3397 3.8703 39 1 2.5016 -5.6051 2.6769 40 1 5.3540 -0.4962 3.7437 41 1 7.5382 1.2518 2.5284 42 1 8.5616 0.1911 -1.3536 43 1 6.9337 -1.6438 -1.3839 44 1 3.7489 -4.7295 0.4603 45 1 3.8875 -2.9627 0.3276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042133622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 33.393923 kcal Electronic energy + Delta-G solvation = -31478.522715 eV Core-core repulsion = 27463.058440 eV Total energy + Delta-G solvation = -4015.464275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.87337 -41.40922 -40.05455 -39.64580 -36.59607 -34.87562 -34.09276 -33.16553 -32.65200 -31.23209 -30.56906 -30.11264 -26.95097 -25.99150 -25.40796 -24.40757 -23.80240 -22.80018 -21.79504 -21.69314 -20.22580 -19.30347 -19.04508 -18.28406 -17.79475 -17.38709 -16.85688 -16.77911 -16.46386 -16.12618 -16.02357 -15.63907 -15.53823 -15.37778 -14.99030 -14.57188 -14.49374 -14.40135 -14.14826 -13.94376 -13.79578 -13.23685 -13.10206 -13.01818 -12.73723 -12.65709 -12.59362 -12.37260 -12.12974 -11.75060 -11.62166 -11.49720 -11.36418 -11.19073 -11.08136 -10.80943 -10.70555 -10.50940 -9.79523 -9.41884 -8.84009 -7.87601 -5.17349 -0.66735 0.12402 0.61438 1.18590 1.30440 1.32892 1.38374 1.79659 2.10113 2.40908 2.66344 3.07108 3.31509 3.32097 3.41922 3.51723 3.75327 3.78725 3.84571 3.95773 4.03681 4.09583 4.23684 4.28097 4.38399 4.45705 4.53049 4.59239 4.64399 4.66075 4.69429 4.78851 4.83064 4.91372 4.99735 5.06042 5.09781 5.14951 5.24322 5.32111 5.45923 5.53285 5.63289 5.71715 5.73355 5.80194 6.19434 6.21696 6.81604 6.84598 7.09740 7.79469 8.44620 9.23689 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.005531 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.047705 B = 5060.889753 C = 6297.692278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.202 4.202 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.130 4.130 12 C -0.086 4.086 13 H 0.128 0.872 14 C -0.117 4.117 15 C 0.113 3.887 16 N -0.581 5.581 17 C 0.599 3.401 18 O -0.559 6.559 19 C -0.028 4.028 20 C -0.108 4.108 21 C -0.214 4.214 22 C 0.169 3.831 23 N -0.509 5.509 24 C 0.118 3.882 25 C -0.162 4.162 26 C 0.076 3.924 27 O -0.170 6.170 28 C 0.097 3.903 29 C 0.141 3.859 30 H 0.040 0.960 31 H 0.241 0.759 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.208 0.792 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -10.929 0.379 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.332 4.332 8 H 0.093 0.907 9 N -0.331 5.331 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.105 4.105 13 H 0.145 0.855 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.310 5.310 17 C 0.387 3.613 18 O -0.440 6.440 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.217 4.217 22 C 0.006 3.994 23 N -0.219 5.219 24 C -0.032 4.032 25 C -0.182 4.182 26 C 0.021 3.979 27 O -0.071 6.071 28 C -0.026 4.026 29 C 0.035 3.965 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.200 0.800 41 H 0.206 0.794 42 H 0.224 0.776 43 H 0.190 0.810 44 H 0.122 0.878 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.076 -10.238 0.697 15.848 hybrid contribution -0.873 1.190 0.059 1.477 sum 11.203 -9.048 0.756 14.421 Atomic orbital electron populations 1.70136 1.05743 1.24456 1.59465 1.25299 0.96218 0.99866 1.04185 0.85552 0.77786 0.81650 0.77482 1.21216 1.22488 1.20491 1.19066 0.90273 0.83391 1.40457 0.90718 1.44480 1.02078 1.00433 1.86084 1.20957 0.83802 0.92312 0.96885 1.23026 0.97873 0.94887 1.01014 1.22482 0.94274 0.99503 0.94232 0.85452 1.21771 0.96774 1.01397 0.95527 1.21838 0.88226 0.93405 0.97277 1.47877 1.40816 1.33445 1.08843 1.16822 0.80189 0.79026 0.85301 1.90786 1.68934 1.68230 1.16093 1.22030 1.00408 1.01443 0.83842 1.22871 0.94570 0.94708 1.00824 1.21102 1.03032 1.02231 0.95372 1.22835 0.87629 0.92269 0.96683 1.67877 1.25548 1.27909 1.00599 1.23264 0.94358 0.88476 0.97060 1.21469 0.97197 1.02720 0.96823 1.20603 0.90378 0.89886 0.97045 1.84222 1.44918 1.48658 1.29282 1.22056 0.98548 1.03919 0.78070 1.21045 0.92439 0.86048 0.97012 0.94246 0.94893 0.97944 0.98110 0.90470 0.90910 0.95232 0.88234 0.90334 0.87068 0.80042 0.79357 0.77571 0.80994 0.87773 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 10.38 21.65 0.22 -57.90 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.94 48.06 29.55 68.60 2.03 50.09 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.20 -10.97 9.70 84.03 0.81 -10.16 16 8 H 0.08 3.98 6.08 -2.91 -0.02 3.96 16 9 N -0.61 -29.03 3.20 -674.01 -2.15 -31.18 16 10 C 0.19 8.87 4.61 86.71 0.40 9.27 16 11 C -0.13 -4.29 6.33 32.15 0.20 -4.09 16 12 C -0.09 -2.41 3.68 -9.37 -0.03 -2.45 16 13 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 14 C -0.12 -3.41 5.04 30.57 0.15 -3.26 16 15 C 0.11 3.15 6.44 86.22 0.56 3.71 16 16 N -0.58 -19.80 2.97 -827.65 -2.45 -22.26 16 17 C 0.60 23.44 7.67 86.54 0.66 24.10 16 18 O -0.56 -24.09 16.32 -4.21 -0.07 -24.16 16 19 C -0.03 -1.04 6.73 24.01 0.16 -0.88 16 20 C -0.11 -3.67 10.81 23.76 0.26 -3.42 16 21 C -0.21 -6.75 6.43 -20.25 -0.13 -6.88 16 22 C 0.17 4.50 11.28 85.01 0.96 5.46 16 23 N -0.51 -13.14 10.34 -195.04 -2.02 -15.16 16 24 C 0.12 2.55 11.13 84.51 0.94 3.49 16 25 C -0.16 -3.93 10.13 22.40 0.23 -3.70 16 26 C 0.08 2.41 7.48 23.21 0.17 2.58 16 27 O -0.17 -5.91 6.71 -9.69 -0.07 -5.97 16 28 C 0.10 3.10 5.34 85.77 0.46 3.56 16 29 C 0.14 5.02 2.97 44.78 0.13 5.15 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.24 14.68 8.31 -92.71 -0.77 13.90 16 32 H 0.00 0.13 7.04 -2.39 -0.02 0.11 16 33 H 0.00 0.04 7.57 -2.38 -0.02 0.02 16 34 H 0.08 2.30 7.97 -2.39 -0.02 2.28 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.37 7.06 -2.39 -0.02 2.36 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 40 H 0.18 5.52 8.06 -2.91 -0.02 5.50 16 41 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 44 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.09 3.30 2.85 -17.19 -0.05 3.25 16 Total: -1.00 -76.66 356.85 2.88 -73.78 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.99 Total: 13.44 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.40 Total: 19.32 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.40 Total: -126.50 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.13 Total: -30.13 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -76.66 2.88 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.176 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds