Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99544 * 2 1 4 4 H 1.48506 * 109.47215 * 274.99498 * 3 2 1 5 5 H 1.48502 * 109.47204 * 34.99752 * 3 2 1 6 6 H 1.48499 * 109.47045 * 154.99859 * 3 2 1 7 7 C 1.38808 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00315 * 174.88848 * 7 2 1 9 9 N 1.36941 * 119.99933 * 354.89204 * 7 2 1 10 10 C 1.48152 * 126.39181 * 355.04970 * 9 7 2 11 11 C 1.55309 * 107.03884 * 175.02444 * 10 9 7 12 12 C 1.53696 * 101.84288 * 337.53260 * 11 10 9 13 13 H 1.09000 * 111.10611 * 281.42396 * 12 11 10 14 14 C 1.51977 * 115.01011 * 153.49945 * 12 11 10 15 15 C 1.53892 * 107.28869 * 184.53853 * 14 12 11 16 16 N 1.46598 * 110.70667 * 51.80667 * 15 14 12 17 17 C 1.34778 * 119.75013 * 132.27905 * 16 15 14 18 18 O 1.21649 * 119.99998 * 6.54436 * 17 16 15 19 19 C 1.46986 * 119.99988 * 186.54668 * 17 16 15 20 20 C 1.35841 * 125.11824 * 187.69423 * 19 17 16 21 21 C 1.46105 * 106.06824 * 179.97438 * 20 19 17 22 22 C 1.39443 * 135.07362 * 180.02562 * 21 20 19 23 23 N 1.31678 * 120.07346 * 179.97438 * 22 21 20 24 24 C 1.32304 * 122.13946 * 0.02562 * 23 22 21 25 25 C 1.37753 * 121.58775 * 359.97438 * 24 23 22 26 26 C 1.39238 * 118.95565 * 0.02562 * 25 24 23 27 27 O 1.34274 * 134.37970 * 180.32015 * 26 25 24 28 28 C 1.47901 * 119.97944 * 311.81375 * 16 15 14 29 29 C 1.45501 * 126.39700 * 175.07562 * 9 7 2 30 30 H 1.09000 * 109.57481 * 93.34188 * 29 9 7 31 31 H 0.96999 * 120.00473 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.92677 * 55.67800 * 10 9 7 33 33 H 1.09000 * 110.08863 * 294.45690 * 10 9 7 34 34 H 1.09002 * 110.95739 * 95.67840 * 11 10 9 35 35 H 1.09000 * 110.95847 * 219.38449 * 11 10 9 36 36 H 1.09001 * 109.89004 * 303.98043 * 14 12 11 37 37 H 1.09002 * 109.89668 * 65.09162 * 14 12 11 38 38 H 1.09003 * 109.22950 * 172.12520 * 15 14 12 39 39 H 1.09006 * 109.22451 * 291.49388 * 15 14 12 40 40 H 1.07992 * 126.96950 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.96645 * 359.94637 * 22 21 20 42 42 H 1.08004 * 119.20261 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.52375 * 180.02562 * 25 24 23 44 44 H 1.09002 * 110.46058 * 292.89257 * 28 16 15 45 45 H 1.09004 * 109.62758 * 171.35677 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3920 2.1075 -1.3948 5 1 1.5043 2.6200 0.8030 6 1 3.5965 1.4122 0.5917 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2039 -0.0828 9 7 1.3298 -2.3856 0.1067 10 6 -0.1260 -2.5455 0.3299 11 6 -0.4346 -4.0655 0.2493 12 6 0.7548 -4.5856 -0.5736 13 1 0.6163 -4.3821 -1.6355 14 6 1.1198 -6.0401 -0.3269 15 6 2.3891 -6.3381 -1.1444 16 7 3.4304 -5.3446 -0.8656 17 6 4.6873 -5.7503 -0.5974 18 8 4.9828 -6.9256 -0.7035 19 6 5.7011 -4.7728 -0.1766 20 6 7.0250 -5.0364 -0.0241 21 6 7.6408 -3.7815 0.4012 22 6 8.9361 -3.3760 0.7207 23 7 9.1680 -2.1304 1.0794 24 6 8.2035 -1.2276 1.1517 25 6 6.8962 -1.5430 0.8534 26 6 6.5879 -2.8448 0.4676 27 8 5.4575 -3.4762 0.1119 28 6 3.1016 -3.9028 -0.8897 29 6 1.9016 -3.7209 0.0217 30 1 2.1456 -4.0780 1.0223 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6810 -2.0126 -0.4421 33 1 -0.3982 -2.1631 1.3137 34 1 -0.4472 -4.5140 1.2427 35 1 -1.3761 -4.2453 -0.2696 36 1 1.3160 -6.1984 0.7336 37 1 0.3067 -6.6875 -0.6553 38 1 2.7597 -7.3295 -0.8835 39 1 2.1456 -6.3146 -2.2067 40 1 7.5217 -5.9818 -0.1846 41 1 9.7501 -4.0843 0.6744 42 1 8.4472 -0.2191 1.4518 43 1 6.1224 -0.7922 0.9178 44 1 2.8534 -3.5854 -1.9025 45 1 3.9477 -3.3279 -0.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042133623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 57.236866 kcal Electronic energy + Delta-G solvation = -30534.106698 eV Core-core repulsion = 26519.676330 eV Total energy + Delta-G solvation = -4014.430368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.86835 -40.22690 -39.02811 -38.37366 -35.42573 -33.27181 -33.03386 -31.91770 -31.41107 -30.07848 -29.31074 -28.55710 -25.60136 -24.40912 -24.03438 -23.23973 -22.39294 -21.57262 -20.46654 -20.03310 -19.51058 -18.33587 -17.72444 -16.91174 -16.53197 -16.15751 -15.71214 -15.50102 -15.13144 -14.87184 -14.66783 -14.46688 -14.08547 -14.01571 -13.65653 -13.63041 -13.48088 -13.36203 -12.90754 -12.50556 -12.14200 -12.00189 -11.75279 -11.55927 -11.37044 -10.99862 -10.86221 -10.77731 -10.53248 -10.47241 -10.20048 -10.01949 -9.91323 -9.86574 -9.73047 -9.56971 -9.44181 -8.76031 -8.72130 -8.44498 -6.93806 -5.78442 -3.15756 0.30097 1.11957 1.60261 2.20059 2.93803 3.04533 3.32497 3.36592 3.40162 3.60039 4.03840 4.22323 4.31303 4.42472 4.70411 4.74097 4.88740 4.94979 5.07224 5.10678 5.21975 5.32074 5.48258 5.50626 5.55782 5.57234 5.65734 5.71637 5.75225 5.78105 5.95847 5.98202 6.02406 6.04693 6.15025 6.20845 6.29971 6.43718 6.50035 6.54385 6.69934 6.79811 6.95279 7.28012 7.41618 7.56199 7.73857 7.74255 7.92798 8.16465 9.09164 9.72966 10.40209 11.31122 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008497 B = 0.005421 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.457209 B = 5163.460242 C = 8235.645027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.137 4.137 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.119 4.119 15 C 0.113 3.887 16 N -0.591 5.591 17 C 0.596 3.404 18 O -0.527 6.527 19 C -0.019 4.019 20 C -0.103 4.103 21 C -0.200 4.200 22 C 0.169 3.831 23 N -0.495 5.495 24 C 0.113 3.887 25 C -0.154 4.154 26 C 0.099 3.901 27 O -0.157 6.157 28 C 0.091 3.909 29 C 0.158 3.842 30 H 0.026 0.974 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -9.411 -0.469 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.009 4.009 16 N -0.322 5.322 17 C 0.383 3.617 18 O -0.406 6.406 19 C -0.069 4.069 20 C -0.125 4.125 21 C -0.203 4.203 22 C 0.004 3.996 23 N -0.206 5.206 24 C -0.036 4.036 25 C -0.174 4.174 26 C 0.044 3.956 27 O -0.058 6.058 28 C -0.030 4.030 29 C 0.049 3.951 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.191 0.809 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.169 0.831 44 H 0.097 0.903 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.276 -9.318 -0.329 13.875 hybrid contribution -0.532 0.807 -0.191 0.985 sum 9.744 -8.511 -0.520 12.948 Atomic orbital electron populations 1.69920 1.04918 1.25086 1.56495 1.24795 0.95631 0.97637 1.02057 0.86179 0.78736 0.83759 0.77553 1.21592 1.21590 1.20575 1.18962 0.90438 0.82349 1.43939 0.90506 1.44165 1.03863 0.99037 1.84403 1.21648 0.84329 0.88908 1.00475 1.22711 0.96769 0.99469 0.98578 1.22334 0.97425 0.93426 1.00246 0.90294 1.21813 0.96119 0.97341 1.00452 1.21685 0.87528 0.92005 0.99690 1.48252 1.07911 1.08859 1.67220 1.16813 0.81132 0.85891 0.77870 1.90841 1.79479 1.15732 1.54534 1.22193 0.95581 0.82626 1.06466 1.22603 0.91528 0.98006 1.00352 1.20940 0.96338 0.94511 1.08550 1.22393 0.93270 0.92536 0.91364 1.67786 1.35807 1.01905 1.15053 1.22604 0.87056 0.99210 0.94728 1.21238 0.99211 0.93147 1.03816 1.20156 0.84625 0.94468 0.96349 1.84422 1.31057 1.20663 1.69629 1.22610 1.01096 0.77564 1.01729 1.21002 0.91177 0.87863 0.95091 0.95661 0.93685 0.91236 0.95318 0.92612 0.92106 0.91362 0.90527 0.89203 0.91370 0.80864 0.81846 0.81395 0.83058 0.90288 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 10.50 55.49 0.58 -25.21 16 2 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 3 Si 0.91 21.03 29.56 -169.99 -5.02 16.01 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.23 -5.94 9.84 -15.06 -0.15 -6.09 16 8 H 0.08 1.92 7.51 -52.49 -0.39 1.53 16 9 N -0.59 -14.08 3.35 -162.85 -0.54 -14.63 16 10 C 0.17 3.93 5.55 -1.91 -0.01 3.92 16 11 C -0.14 -2.41 6.54 -25.14 -0.16 -2.58 16 12 C -0.11 -1.89 2.60 -89.46 -0.23 -2.13 16 13 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 14 C -0.12 -1.57 5.72 -26.79 -0.15 -1.72 16 15 C 0.11 1.50 6.29 -3.52 -0.02 1.48 16 16 N -0.59 -9.21 3.00 -174.07 -0.52 -9.73 16 17 C 0.60 9.50 7.64 -12.72 -0.10 9.40 16 18 O -0.53 -8.97 16.22 5.23 0.08 -8.89 16 19 C -0.02 -0.29 6.78 -36.90 -0.25 -0.54 16 20 C -0.10 -1.32 10.81 -37.29 -0.40 -1.73 16 21 C -0.20 -2.61 6.43 -105.22 -0.68 -3.28 16 22 C 0.17 1.91 11.28 -17.17 -0.19 1.72 16 23 N -0.50 -6.10 10.34 -13.00 -0.13 -6.23 16 24 C 0.11 1.31 11.13 -17.53 -0.20 1.12 16 25 C -0.15 -2.03 10.13 -39.39 -0.40 -2.43 16 26 C 0.10 1.47 7.48 -38.13 -0.29 1.18 16 27 O -0.16 -2.56 6.95 3.70 0.03 -2.53 16 28 C 0.09 1.60 5.62 -3.89 -0.02 1.58 16 29 C 0.16 3.08 2.79 -67.77 -0.19 2.89 16 30 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.07 1.79 6.79 -51.93 -0.35 1.43 16 33 H 0.03 0.72 8.07 -51.93 -0.42 0.31 16 34 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.16 7.02 -51.93 -0.36 0.80 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.17 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.11 2.04 3.50 -55.60 -0.19 1.84 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -30.48 361.51 -9.54 -40.01 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.91 Total: 3.18 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.54 Total: 2.57 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.62 Total: -55.80 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.11 Total: -11.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.48 -9.54 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042133623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.249 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds