Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47022 * 239.99838 * 3 2 1 5 5 H 1.48502 * 109.47270 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47149 * 120.00149 * 3 2 1 7 7 C 1.38820 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36927 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.47435 * 126.06291 * 0.02562 * 9 7 2 11 11 C 1.54504 * 107.14754 * 178.35384 * 10 9 7 12 12 C 1.56017 * 102.61542 * 337.15983 * 11 10 9 13 13 H 1.09001 * 112.85996 * 157.06425 * 12 11 10 14 14 C 1.53096 * 106.39548 * 281.61453 * 12 11 10 15 15 C 1.52843 * 110.57063 * 164.58112 * 14 12 11 16 16 N 1.47147 * 107.97713 * 302.64760 * 15 14 12 17 17 C 1.34780 * 121.21492 * 237.30368 * 16 15 14 18 18 O 1.21563 * 119.99739 * 169.77876 * 17 16 15 19 19 C 1.47779 * 119.99944 * 349.78437 * 17 16 15 20 20 N 1.32821 * 120.07613 * 352.58243 * 19 17 16 21 21 C 1.31672 * 122.01451 * 179.67289 * 20 19 17 22 22 C 1.38390 * 121.69715 * 0.62712 * 21 20 19 23 23 C 1.38864 * 119.13666 * 359.68388 * 22 21 20 24 24 O 1.34427 * 134.63415 * 179.97438 * 23 22 21 25 25 C 1.34449 * 110.84880 * 180.02562 * 24 23 22 26 26 C 1.34302 * 110.16670 * 0.02562 * 25 24 23 27 27 C 1.40203 * 120.07338 * 172.85707 * 19 17 16 28 28 C 1.46763 * 117.57353 * 57.28930 * 16 15 14 29 29 C 1.46470 * 126.05865 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.42291 * 90.12570 * 29 9 7 31 31 H 0.97002 * 119.99788 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.90545 * 297.73392 * 10 9 7 33 33 H 1.09003 * 109.89926 * 58.79705 * 10 9 7 34 34 H 1.08999 * 110.77898 * 95.44059 * 11 10 9 35 35 H 1.09004 * 110.78152 * 218.68570 * 11 10 9 36 36 H 1.08994 * 109.25455 * 284.85964 * 14 12 11 37 37 H 1.08997 * 109.25572 * 44.30460 * 14 12 11 38 38 H 1.09002 * 109.76013 * 62.26816 * 15 14 12 39 39 H 1.09004 * 109.75868 * 183.02780 * 15 14 12 40 40 H 1.07996 * 119.14777 * 180.29365 * 21 20 19 41 41 H 1.08009 * 120.43151 * 179.66586 * 22 21 20 42 42 H 1.07998 * 124.91137 * 180.02562 * 25 24 23 43 43 H 1.08006 * 126.88896 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.22346 * 187.16482 * 28 16 15 45 45 H 1.09000 * 109.22828 * 67.80191 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3880 -0.0016 10 6 -0.1407 -2.5436 -0.0028 11 6 -0.4379 -4.0592 -0.0461 12 6 0.8721 -4.6460 -0.6573 13 1 1.0214 -5.6969 -0.4093 14 6 0.7978 -4.3904 -2.1650 15 6 2.1717 -4.5739 -2.8091 16 7 3.1111 -3.6571 -2.1442 17 6 3.8041 -2.7377 -2.8450 18 8 4.4291 -1.8734 -2.2619 19 6 3.8039 -2.7804 -4.3222 20 7 3.2465 -3.8045 -4.9584 21 6 3.2192 -3.8784 -6.2728 22 6 3.7828 -2.8961 -7.0681 23 6 4.3870 -1.8013 -6.4643 24 8 5.0124 -0.6999 -6.9149 25 6 5.4266 0.0676 -5.8917 26 6 5.0902 -0.4996 -4.7217 27 6 4.3972 -1.7429 -5.0551 28 6 3.2659 -3.7801 -0.6899 29 6 1.9197 -3.7268 -0.0028 30 1 2.0573 -4.0435 1.0311 31 1 -0.4850 0.8401 0.0004 32 1 -0.5608 -2.1089 0.9042 33 1 -0.5650 -2.0543 -0.8796 34 1 -0.6048 -4.4494 0.9579 35 1 -1.2944 -4.2671 -0.6875 36 1 0.0938 -5.0909 -2.6140 37 1 0.4519 -3.3718 -2.3403 38 1 2.5058 -5.6031 -2.6777 39 1 2.1152 -4.3369 -3.8716 40 1 2.7495 -4.7301 -6.7421 41 1 3.7534 -2.9801 -8.1446 42 1 5.9537 1.0045 -5.9956 43 1 5.2904 -0.1138 -3.7329 44 1 3.8881 -2.9630 -0.3248 45 1 3.7494 -4.7294 -0.4593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042162009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 68.043075 kcal Electronic energy + Delta-G solvation = -31193.785076 eV Core-core repulsion = 27179.823301 eV Total energy + Delta-G solvation = -4013.961775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.76372 -40.16739 -38.90191 -37.71915 -34.93088 -32.98403 -32.72875 -32.05694 -30.95610 -30.02555 -28.86740 -28.25212 -25.35650 -24.41811 -23.61293 -23.16374 -22.30076 -21.92231 -20.03891 -19.85524 -18.39455 -18.01787 -17.53053 -16.53652 -16.44228 -16.38224 -15.67802 -15.42987 -14.93177 -14.76771 -14.39021 -14.08093 -13.87088 -13.77311 -13.39479 -13.33253 -12.93617 -12.86101 -12.63043 -12.48971 -11.96679 -11.84807 -11.47302 -11.31266 -11.22065 -10.75740 -10.73874 -10.64582 -10.37984 -10.10486 -9.94812 -9.77726 -9.74426 -9.56846 -9.56357 -9.39928 -8.77183 -8.46512 -8.44315 -7.95693 -6.68048 -5.56079 -2.87149 0.30578 1.04044 2.24217 2.49685 2.97955 3.34145 3.52378 3.54682 3.59657 3.92176 4.09294 4.32873 4.44981 4.64767 4.77747 4.90810 5.06102 5.15801 5.27375 5.41181 5.49003 5.59351 5.64608 5.66934 5.73562 5.77985 5.87328 5.96134 5.98364 6.09569 6.12670 6.23818 6.30262 6.36970 6.38975 6.52668 6.63313 6.66758 6.72677 6.83402 6.85595 7.09805 7.24658 7.57926 7.70690 7.72942 7.97600 7.99892 8.38698 8.64874 9.37671 9.98604 10.63424 11.56526 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.005265 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.378831 B = 5316.443333 C = 7053.620798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.207 4.207 8 H 0.083 0.917 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.122 4.122 15 C 0.077 3.923 16 N -0.570 5.570 17 C 0.570 3.430 18 O -0.518 6.518 19 C 0.156 3.844 20 N -0.455 5.455 21 C 0.103 3.897 22 C -0.144 4.144 23 C 0.082 3.918 24 O -0.190 6.190 25 C -0.005 4.005 26 C -0.166 4.166 27 C -0.134 4.134 28 C 0.111 3.889 29 C 0.155 3.845 30 H 0.025 0.975 31 H 0.248 0.752 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.140 0.860 40 H 0.174 0.826 41 H 0.146 0.854 42 H 0.215 0.785 43 H 0.175 0.825 44 H 0.094 0.906 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -9.731 -13.834 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.336 4.336 8 H 0.100 0.900 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.046 4.046 16 N -0.301 5.301 17 C 0.355 3.645 18 O -0.393 6.393 19 C 0.013 3.987 20 N -0.169 5.169 21 C -0.050 4.050 22 C -0.164 4.164 23 C 0.027 3.973 24 O -0.090 6.090 25 C -0.069 4.069 26 C -0.186 4.186 27 C -0.138 4.138 28 C -0.012 4.012 29 C 0.046 3.954 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.191 0.809 41 H 0.164 0.836 42 H 0.232 0.768 43 H 0.192 0.808 44 H 0.112 0.888 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.505 -9.600 -13.314 17.657 hybrid contribution 0.575 1.633 -0.287 1.755 sum 7.081 -7.967 -13.601 17.280 Atomic orbital electron populations 1.69956 1.04777 1.24679 1.58277 1.24696 0.95553 0.97396 1.02944 0.86269 0.78444 0.83584 0.78059 1.21087 1.22034 1.21370 1.19027 0.90626 0.81996 1.41907 0.89970 1.44291 1.01404 0.99274 1.86335 1.21205 0.84350 0.88310 1.00715 1.23160 0.96234 0.99722 0.99128 1.22379 0.96871 0.97584 0.95332 0.90765 1.21851 0.96518 1.02805 0.94858 1.22830 0.87977 0.92301 1.01443 1.47584 1.40874 1.33961 1.07701 1.17477 0.80796 0.81649 0.84591 1.90771 1.44829 1.34150 1.69541 1.21005 0.93592 0.89257 0.94843 1.67762 1.15719 1.23174 1.10272 1.22740 0.96073 0.97453 0.88766 1.21093 1.01282 0.92034 1.02040 1.19732 0.96514 0.89057 0.92023 1.83951 1.61040 1.28235 1.35792 1.24238 1.01379 0.96993 0.84271 1.22796 1.01465 0.93880 1.00437 1.20616 1.02547 0.97469 0.93195 1.21487 0.99236 1.01342 0.79155 1.20673 0.91110 0.87912 0.95681 0.95755 0.94134 0.94217 0.93789 0.92896 0.92393 0.92293 0.90625 0.92526 0.84395 0.80878 0.83614 0.76840 0.80766 0.88779 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 10.38 55.49 0.58 -27.62 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 23.71 29.55 -169.99 -5.02 18.69 16 4 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.21 -5.91 9.70 -15.06 -0.15 -6.05 16 8 H 0.08 2.38 6.48 -52.49 -0.34 2.04 16 9 N -0.59 -14.96 3.20 -164.45 -0.53 -15.49 16 10 C 0.18 4.40 4.61 -2.74 -0.01 4.39 16 11 C -0.14 -2.72 6.32 -24.33 -0.15 -2.87 16 12 C -0.10 -1.77 3.68 -88.45 -0.33 -2.10 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -2.06 5.05 -26.76 -0.14 -2.19 16 15 C 0.08 1.22 5.96 -3.77 -0.02 1.20 16 16 N -0.57 -10.79 2.97 -175.24 -0.52 -11.31 16 17 C 0.57 11.56 7.65 -12.36 -0.09 11.47 16 18 O -0.52 -11.96 14.71 5.31 0.08 -11.88 16 19 C 0.16 2.69 6.63 -82.80 -0.55 2.14 16 20 N -0.46 -6.46 6.19 -9.69 -0.06 -6.52 16 21 C 0.10 1.08 11.13 -17.56 -0.20 0.88 16 22 C -0.14 -1.50 10.13 -39.29 -0.40 -1.90 16 23 C 0.08 1.11 7.48 -38.29 -0.29 0.82 16 24 O -0.19 -2.42 10.57 4.98 0.05 -2.36 16 25 C 0.00 -0.06 11.97 29.34 0.35 0.29 16 26 C -0.17 -2.54 10.32 -37.78 -0.39 -2.93 16 27 C -0.13 -2.20 6.16 -104.90 -0.65 -2.85 16 28 C 0.11 2.15 5.70 -4.79 -0.03 2.12 16 29 C 0.15 3.19 2.96 -68.33 -0.20 2.99 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 33 H 0.04 1.21 7.04 -51.93 -0.37 0.84 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.59 6.86 -51.93 -0.36 1.23 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.14 2.12 4.04 -80.93 -0.33 1.79 16 40 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.22 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.17 2.87 7.32 -52.48 -0.38 2.48 16 44 H 0.09 2.08 5.54 -51.93 -0.29 1.79 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -34.90 353.98 -9.23 -44.13 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.81 Total: 2.04 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.33 Total: 4.99 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.53 Total: -60.94 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.13 Total: -14.24 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.90 -9.23 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042162009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.169 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds