Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48500 * 109.47041 * 274.99909 * 3 2 1 5 5 H 1.48498 * 109.47059 * 35.00015 * 3 2 1 6 6 H 1.48500 * 109.47083 * 155.00193 * 3 2 1 7 7 C 1.38813 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99828 * 185.04262 * 7 2 1 9 9 N 1.36934 * 120.00271 * 5.03978 * 7 2 1 10 10 C 1.47436 * 126.06274 * 355.01108 * 9 7 2 11 11 C 1.54494 * 107.15238 * 181.60377 * 10 9 7 12 12 C 1.56027 * 102.61439 * 22.83648 * 11 10 9 13 13 H 1.08998 * 112.86152 * 202.93599 * 12 11 10 14 14 C 1.53097 * 106.39281 * 78.38530 * 12 11 10 15 15 C 1.52835 * 110.57302 * 195.41622 * 14 12 11 16 16 N 1.47070 * 107.95539 * 57.35062 * 15 14 12 17 17 C 1.34773 * 121.16668 * 122.75385 * 16 15 14 18 18 O 1.21560 * 120.00296 * 173.69659 * 17 16 15 19 19 C 1.47789 * 119.99516 * 353.69229 * 17 16 15 20 20 N 1.32811 * 120.07569 * 5.45288 * 19 17 16 21 21 C 1.31671 * 122.01269 * 179.67561 * 20 19 17 22 22 C 1.38393 * 121.70187 * 0.62147 * 21 20 19 23 23 C 1.38865 * 119.13102 * 359.68555 * 22 21 20 24 24 O 1.34427 * 134.63423 * 179.97438 * 23 22 21 25 25 C 1.34452 * 110.85102 * 180.02562 * 24 23 22 26 26 C 1.34304 * 110.16627 * 0.02562 * 25 24 23 27 27 C 1.40207 * 120.06935 * 185.72136 * 19 17 16 28 28 C 1.46760 * 117.62108 * 302.68888 * 16 15 14 29 29 C 1.46474 * 126.06186 * 174.98105 * 9 7 2 30 30 H 1.09000 * 108.41764 * 269.26095 * 29 9 7 31 31 H 0.96997 * 120.00415 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.89755 * 300.97856 * 10 9 7 33 33 H 1.08992 * 109.90305 * 62.21606 * 10 9 7 34 34 H 1.09001 * 110.78861 * 141.12114 * 11 10 9 35 35 H 1.09004 * 110.78273 * 264.55823 * 11 10 9 36 36 H 1.08996 * 109.25856 * 315.70047 * 14 12 11 37 37 H 1.09008 * 109.25677 * 75.17704 * 14 12 11 38 38 H 1.08999 * 109.76517 * 176.97459 * 15 14 12 39 39 H 1.09000 * 109.76248 * 297.68823 * 15 14 12 40 40 H 1.08003 * 119.15191 * 180.33185 * 21 20 19 41 41 H 1.08004 * 120.43643 * 179.67167 * 22 21 20 42 42 H 1.07998 * 124.91327 * 179.97438 * 25 24 23 43 43 H 1.07998 * 126.89369 * 180.02562 * 26 25 24 44 44 H 1.08995 * 109.23447 * 292.23582 * 28 16 15 45 45 H 1.09002 * 109.22886 * 172.83017 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0817 9 7 1.3295 -2.3857 -0.1052 10 6 -0.1360 -2.5457 -0.1202 11 6 -0.4282 -4.0599 -0.2124 12 6 0.8831 -4.6946 0.3463 13 1 1.0363 -5.7187 0.0060 14 6 0.8060 -4.5743 1.8706 15 6 2.1796 -4.8099 2.4981 16 7 3.1159 -3.8349 1.9187 17 6 3.8052 -2.9803 2.7004 18 8 4.6566 -2.2626 2.2129 19 6 3.5256 -2.9157 4.1501 20 7 2.6745 -3.7725 4.7027 21 6 2.4023 -3.7533 5.9908 22 6 2.9800 -2.8280 6.8425 23 6 3.8747 -1.9001 6.3260 24 8 4.5965 -0.8928 6.8469 25 6 5.3246 -0.2835 5.8948 26 6 5.1105 -0.8667 4.7041 27 6 4.1541 -1.9460 4.9442 28 6 3.2738 -3.8271 0.4597 29 6 1.9283 -3.7173 -0.2228 30 1 2.0571 -3.9448 -1.2810 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5629 -2.1406 0.7974 33 1 -0.5564 -2.0333 -0.9856 34 1 -1.2827 -4.3276 0.4092 35 1 -0.5925 -4.3599 -1.2474 36 1 0.4563 -3.5765 2.1352 37 1 0.1043 -5.3148 2.2546 38 1 2.1210 -4.6685 3.5773 39 1 2.5170 -5.8225 2.2769 40 1 1.7067 -4.4753 6.3924 41 1 2.7379 -2.8274 7.8951 42 1 5.9852 0.5541 6.0631 43 1 5.5563 -0.5938 3.7590 44 1 3.7609 -4.7505 0.1463 45 1 3.8935 -2.9784 0.1702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042162011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = 70.981954 kcal Electronic energy + Delta-G solvation = -31280.655793 eV Core-core repulsion = 27266.821457 eV Total energy + Delta-G solvation = -4013.834336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.76530 -40.20353 -38.89023 -37.75343 -34.94096 -32.98418 -32.74827 -32.10126 -30.92882 -30.03268 -28.86773 -28.24462 -25.38514 -24.43616 -23.62059 -23.17626 -22.28332 -21.93515 -20.05665 -19.86821 -18.36068 -18.02989 -17.57304 -16.51339 -16.46777 -16.37882 -15.78003 -15.42662 -14.94966 -14.75048 -14.43945 -14.09131 -13.85611 -13.76769 -13.41558 -13.36452 -12.91601 -12.75467 -12.74475 -12.47855 -11.98990 -11.86059 -11.51076 -11.33462 -11.27328 -10.80039 -10.71707 -10.69251 -10.37608 -10.09077 -9.92573 -9.75030 -9.72673 -9.58010 -9.56444 -9.46316 -8.53891 -8.47640 -8.46322 -7.96336 -6.70123 -5.60712 -2.91499 0.31342 1.04191 2.24245 2.49925 2.96768 3.34755 3.47501 3.52887 3.57709 3.95409 4.06601 4.32847 4.44982 4.60863 4.78326 4.91352 5.06194 5.14535 5.27517 5.44453 5.49800 5.59200 5.64307 5.67529 5.72540 5.77974 5.90611 5.97418 5.98187 6.09207 6.14207 6.25381 6.29694 6.37943 6.40015 6.53549 6.66453 6.71687 6.78631 6.84283 6.94176 7.12364 7.32348 7.56068 7.67816 7.72563 7.95199 7.99003 8.35535 8.62471 9.33635 9.94839 10.60963 11.52003 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.005425 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.189741 B = 5159.804456 C = 6725.089303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.144 4.144 12 C -0.104 4.104 13 H 0.073 0.927 14 C -0.115 4.115 15 C 0.038 3.962 16 N -0.566 5.566 17 C 0.573 3.427 18 O -0.530 6.530 19 C 0.162 3.838 20 N -0.452 5.452 21 C 0.105 3.895 22 C -0.144 4.144 23 C 0.085 3.915 24 O -0.190 6.190 25 C -0.005 4.005 26 C -0.165 4.165 27 C -0.135 4.135 28 C 0.111 3.889 29 C 0.155 3.845 30 H 0.026 0.974 31 H 0.249 0.751 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.172 0.828 39 H 0.050 0.950 40 H 0.175 0.825 41 H 0.147 0.853 42 H 0.215 0.785 43 H 0.175 0.825 44 H 0.056 0.944 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -9.849 13.453 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.313 5.313 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.124 4.124 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.085 4.085 16 N -0.296 5.296 17 C 0.358 3.642 18 O -0.406 6.406 19 C 0.020 3.980 20 N -0.164 5.164 21 C -0.048 4.048 22 C -0.164 4.164 23 C 0.030 3.970 24 O -0.090 6.090 25 C -0.069 4.069 26 C -0.185 4.185 27 C -0.139 4.139 28 C -0.012 4.012 29 C 0.046 3.954 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.187 0.813 39 H 0.068 0.932 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.232 0.768 43 H 0.192 0.808 44 H 0.074 0.926 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.500 -9.737 12.979 17.132 hybrid contribution 0.550 1.596 0.157 1.695 sum 6.050 -8.141 13.136 16.596 Atomic orbital electron populations 1.69971 1.04784 1.24634 1.57826 1.24717 0.95575 0.97395 1.02759 0.86216 0.79104 0.84043 0.77408 1.21783 1.22052 1.20334 1.19064 0.90938 0.82172 1.41962 0.90108 1.44285 1.01405 0.99824 1.85836 1.21202 0.84350 0.88394 1.00576 1.23161 0.96288 0.99549 0.99240 1.22430 0.96804 0.97428 0.95766 0.90857 1.21736 0.96493 1.02555 0.94510 1.23638 0.88185 0.90172 1.06471 1.47606 1.41142 1.34102 1.06703 1.17445 0.82085 0.80522 0.84120 1.90739 1.33301 1.42719 1.73866 1.20988 0.91669 0.90716 0.94637 1.67218 1.13896 1.23209 1.12124 1.22804 0.97271 0.96449 0.88277 1.21064 0.97835 0.95085 1.02444 1.19737 0.95106 0.90625 0.91533 1.83954 1.48869 1.38731 1.37409 1.24236 0.97399 0.99172 0.86060 1.22770 0.99988 0.95850 0.99929 1.20574 1.00809 0.99024 0.93462 1.21476 0.99037 1.01840 0.78886 1.20681 0.91110 0.87657 0.95907 0.95660 0.94111 0.94183 0.93925 0.92387 0.92902 0.90687 0.92501 0.81317 0.93179 0.80752 0.83516 0.76831 0.80792 0.92574 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.95 10.41 55.49 0.58 -27.38 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.90 23.46 29.56 -169.99 -5.02 18.44 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.21 -6.08 9.71 -15.06 -0.15 -6.22 16 8 H 0.08 2.35 6.47 -52.48 -0.34 2.01 16 9 N -0.59 -15.00 3.20 -164.42 -0.53 -15.53 16 10 C 0.18 4.42 4.61 -2.75 -0.01 4.40 16 11 C -0.14 -2.73 6.33 -24.33 -0.15 -2.89 16 12 C -0.10 -1.84 3.68 -88.43 -0.33 -2.17 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.11 -1.95 5.04 -26.77 -0.13 -2.08 16 15 C 0.04 0.60 6.27 -3.82 -0.02 0.58 16 16 N -0.57 -10.82 2.96 -175.30 -0.52 -11.34 16 17 C 0.57 11.68 7.68 -12.36 -0.09 11.59 16 18 O -0.53 -12.06 14.72 5.31 0.08 -11.98 16 19 C 0.16 2.85 6.72 -82.80 -0.56 2.30 16 20 N -0.45 -6.58 6.00 -9.68 -0.06 -6.64 16 21 C 0.10 1.13 11.13 -17.56 -0.20 0.93 16 22 C -0.14 -1.53 10.13 -39.29 -0.40 -1.93 16 23 C 0.08 1.17 7.48 -38.29 -0.29 0.88 16 24 O -0.19 -2.42 10.57 4.97 0.05 -2.36 16 25 C 0.00 -0.06 11.97 29.34 0.35 0.30 16 26 C -0.17 -2.50 10.32 -37.78 -0.39 -2.89 16 27 C -0.13 -2.22 6.16 -104.90 -0.65 -2.87 16 28 C 0.11 2.18 5.66 -4.77 -0.03 2.16 16 29 C 0.15 3.23 2.97 -68.30 -0.20 3.03 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 1.10 7.19 -51.92 -0.37 0.73 16 33 H 0.04 1.17 7.44 -51.93 -0.39 0.78 16 34 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.57 6.85 -51.93 -0.36 1.22 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.17 2.57 3.34 -103.70 -0.35 2.23 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.22 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.17 2.76 7.31 -52.49 -0.38 2.38 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.10 5.56 -51.93 -0.29 1.82 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -34.96 353.56 -9.26 -44.22 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.83 Total: 2.48 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -3.34 Total: 4.75 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.53 Total: -60.87 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.13 Total: -14.34 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.96 -9.26 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042162011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.200 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds