Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48500 * 109.47041 * 274.99909 * 3 2 1 5 5 H 1.48498 * 109.47059 * 35.00015 * 3 2 1 6 6 H 1.48500 * 109.47083 * 155.00193 * 3 2 1 7 7 C 1.38813 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99828 * 185.04262 * 7 2 1 9 9 N 1.36934 * 120.00271 * 5.03978 * 7 2 1 10 10 C 1.47436 * 126.06274 * 355.01108 * 9 7 2 11 11 C 1.54494 * 107.15238 * 181.60377 * 10 9 7 12 12 C 1.56027 * 102.61439 * 22.83648 * 11 10 9 13 13 H 1.08998 * 112.86152 * 202.93599 * 12 11 10 14 14 C 1.53097 * 106.39281 * 78.38530 * 12 11 10 15 15 C 1.52835 * 110.57302 * 195.41622 * 14 12 11 16 16 N 1.47070 * 107.95539 * 57.35062 * 15 14 12 17 17 C 1.34773 * 121.16668 * 122.75385 * 16 15 14 18 18 O 1.21560 * 120.00296 * 173.69659 * 17 16 15 19 19 C 1.47789 * 119.99516 * 353.69229 * 17 16 15 20 20 N 1.32811 * 120.07569 * 5.45288 * 19 17 16 21 21 C 1.31671 * 122.01269 * 179.67561 * 20 19 17 22 22 C 1.38393 * 121.70187 * 0.62147 * 21 20 19 23 23 C 1.38865 * 119.13102 * 359.68555 * 22 21 20 24 24 O 1.34427 * 134.63423 * 179.97438 * 23 22 21 25 25 C 1.34452 * 110.85102 * 180.02562 * 24 23 22 26 26 C 1.34304 * 110.16627 * 0.02562 * 25 24 23 27 27 C 1.40207 * 120.06935 * 185.72136 * 19 17 16 28 28 C 1.46760 * 117.62108 * 302.68888 * 16 15 14 29 29 C 1.46474 * 126.06186 * 174.98105 * 9 7 2 30 30 H 1.09000 * 108.41764 * 269.26095 * 29 9 7 31 31 H 0.96997 * 120.00415 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.89755 * 300.97856 * 10 9 7 33 33 H 1.08992 * 109.90305 * 62.21606 * 10 9 7 34 34 H 1.09001 * 110.78861 * 141.12114 * 11 10 9 35 35 H 1.09004 * 110.78273 * 264.55823 * 11 10 9 36 36 H 1.08996 * 109.25856 * 315.70047 * 14 12 11 37 37 H 1.09008 * 109.25677 * 75.17704 * 14 12 11 38 38 H 1.08999 * 109.76517 * 176.97459 * 15 14 12 39 39 H 1.09000 * 109.76248 * 297.68823 * 15 14 12 40 40 H 1.08003 * 119.15191 * 180.33185 * 21 20 19 41 41 H 1.08004 * 120.43643 * 179.67167 * 22 21 20 42 42 H 1.07998 * 124.91327 * 179.97438 * 25 24 23 43 43 H 1.07998 * 126.89369 * 180.02562 * 26 25 24 44 44 H 1.08995 * 109.23447 * 292.23582 * 28 16 15 45 45 H 1.09002 * 109.22886 * 172.83017 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0817 9 7 1.3295 -2.3857 -0.1052 10 6 -0.1360 -2.5457 -0.1202 11 6 -0.4282 -4.0599 -0.2124 12 6 0.8831 -4.6946 0.3463 13 1 1.0363 -5.7187 0.0060 14 6 0.8060 -4.5743 1.8706 15 6 2.1796 -4.8099 2.4981 16 7 3.1159 -3.8349 1.9187 17 6 3.8052 -2.9803 2.7004 18 8 4.6566 -2.2626 2.2129 19 6 3.5256 -2.9157 4.1501 20 7 2.6745 -3.7725 4.7027 21 6 2.4023 -3.7533 5.9908 22 6 2.9800 -2.8280 6.8425 23 6 3.8747 -1.9001 6.3260 24 8 4.5965 -0.8928 6.8469 25 6 5.3246 -0.2835 5.8948 26 6 5.1105 -0.8667 4.7041 27 6 4.1541 -1.9460 4.9442 28 6 3.2738 -3.8271 0.4597 29 6 1.9283 -3.7173 -0.2228 30 1 2.0571 -3.9448 -1.2810 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5629 -2.1406 0.7974 33 1 -0.5564 -2.0333 -0.9856 34 1 -1.2827 -4.3276 0.4092 35 1 -0.5925 -4.3599 -1.2474 36 1 0.4563 -3.5765 2.1352 37 1 0.1043 -5.3148 2.2546 38 1 2.1210 -4.6685 3.5773 39 1 2.5170 -5.8225 2.2769 40 1 1.7067 -4.4753 6.3924 41 1 2.7379 -2.8274 7.8951 42 1 5.9852 0.5541 6.0631 43 1 5.5563 -0.5938 3.7590 44 1 3.7609 -4.7505 0.1463 45 1 3.8935 -2.9784 0.1702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042162011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = 47.581912 kcal Electronic energy + Delta-G solvation = -31281.670495 eV Core-core repulsion = 27266.821457 eV Total energy + Delta-G solvation = -4014.849038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.77517 -41.57619 -40.19766 -39.22557 -36.56220 -34.70086 -34.00338 -33.26520 -32.60920 -31.23333 -30.35411 -30.01933 -26.73823 -26.38130 -24.99150 -24.23914 -23.68852 -23.13470 -21.75006 -21.37144 -19.89354 -19.06588 -18.72421 -18.46057 -17.73593 -17.42227 -17.10146 -16.86975 -16.47425 -16.19589 -16.04340 -15.65281 -15.46476 -15.19057 -14.69230 -14.58123 -14.25513 -14.14552 -14.03996 -13.93683 -13.70045 -13.21642 -13.14371 -13.04763 -12.85609 -12.67099 -12.62368 -12.30284 -12.08376 -11.66444 -11.54557 -11.44629 -11.35667 -11.23547 -11.14728 -10.69604 -10.59211 -9.74307 -9.60706 -9.31163 -8.81829 -7.86829 -5.16488 -0.76456 0.04146 1.19974 1.32907 1.33765 1.44834 1.55520 1.68498 2.03718 2.44959 2.74430 3.00323 3.23872 3.31343 3.47483 3.54568 3.81388 3.91356 4.00079 4.04719 4.07251 4.19618 4.27256 4.40102 4.48030 4.56365 4.58128 4.66270 4.73098 4.73685 4.75469 4.85010 4.91828 5.04330 5.07182 5.16465 5.18313 5.23013 5.32768 5.50638 5.53676 5.67751 5.74112 5.78624 5.80018 6.06538 6.21017 6.44398 6.64956 7.12237 7.16999 7.80728 8.45288 9.24299 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.005425 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.189741 B = 5159.804456 C = 6725.089303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.206 4.206 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.188 3.812 11 C -0.129 4.129 12 C -0.089 4.089 13 H 0.119 0.881 14 C -0.108 4.108 15 C 0.035 3.965 16 N -0.570 5.570 17 C 0.558 3.442 18 O -0.576 6.576 19 C 0.117 3.883 20 N -0.453 5.453 21 C 0.104 3.896 22 C -0.116 4.116 23 C 0.069 3.931 24 O -0.185 6.185 25 C 0.039 3.961 26 C -0.224 4.224 27 C -0.161 4.161 28 C 0.113 3.887 29 C 0.143 3.857 30 H 0.028 0.972 31 H 0.243 0.757 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.096 0.904 38 H 0.183 0.817 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.195 0.805 42 H 0.264 0.736 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -12.573 16.441 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.336 4.336 8 H 0.083 0.917 9 N -0.329 5.329 10 C 0.063 3.937 11 C -0.167 4.167 12 C -0.108 4.108 13 H 0.137 0.863 14 C -0.146 4.146 15 C -0.086 4.086 16 N -0.300 5.300 17 C 0.345 3.655 18 O -0.456 6.456 19 C -0.023 4.023 20 N -0.166 5.166 21 C -0.049 4.049 22 C -0.136 4.136 23 C 0.014 3.986 24 O -0.085 6.085 25 C -0.025 4.025 26 C -0.244 4.244 27 C -0.165 4.165 28 C -0.010 4.010 29 C 0.036 3.964 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.115 0.885 38 H 0.197 0.803 39 H 0.099 0.901 40 H 0.244 0.756 41 H 0.212 0.788 42 H 0.279 0.721 43 H 0.168 0.832 44 H 0.110 0.890 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.954 -12.517 15.953 20.873 hybrid contribution 0.755 2.417 -0.657 2.615 sum 5.708 -10.100 15.296 19.198 Atomic orbital electron populations 1.70163 1.05659 1.24568 1.59476 1.25378 0.96434 1.00107 1.03938 0.85370 0.77689 0.80937 0.77478 1.21030 1.21879 1.20807 1.19111 0.90471 0.83853 1.40191 0.91690 1.44472 1.02159 1.00906 1.85409 1.20953 0.83584 0.92366 0.96797 1.23031 0.97998 0.94715 1.00969 1.22495 0.93866 0.98411 0.96068 0.86276 1.21682 0.97848 1.00947 0.94150 1.23923 0.86870 0.90629 1.07164 1.47802 1.41468 1.34469 1.06224 1.18081 0.81633 0.79929 0.85850 1.90686 1.35302 1.44385 1.75186 1.20555 0.94958 0.93507 0.93280 1.66962 1.12919 1.22503 1.14221 1.23706 0.97336 0.97154 0.86746 1.21706 0.94750 0.92475 1.04620 1.20164 0.96283 0.91743 0.90386 1.83988 1.48769 1.38511 1.37231 1.25009 0.95141 0.98039 0.84342 1.22746 1.02657 0.98235 1.00758 1.20902 1.01202 0.99213 0.95205 1.21353 0.97912 1.01832 0.79924 1.20987 0.92672 0.86286 0.96444 0.95455 0.94797 0.98094 0.97958 0.90025 0.91338 0.95526 0.88522 0.80264 0.90148 0.75603 0.78808 0.72059 0.83236 0.89030 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 10.41 21.65 0.23 -60.31 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.96 50.92 29.56 68.60 2.03 52.95 16 4 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 5 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 6 H -0.28 -15.08 7.11 99.48 0.71 -14.37 16 7 C -0.21 -12.50 9.71 84.03 0.82 -11.69 16 8 H 0.07 4.09 6.47 -2.91 -0.02 4.07 16 9 N -0.60 -32.18 3.20 -674.11 -2.15 -34.33 16 10 C 0.19 9.62 4.61 86.71 0.40 10.02 16 11 C -0.13 -4.67 6.33 32.15 0.20 -4.47 16 12 C -0.09 -2.89 3.68 -9.38 -0.03 -2.93 16 13 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 14 C -0.11 -3.41 5.04 30.57 0.15 -3.25 16 15 C 0.04 1.05 6.27 86.22 0.54 1.59 16 16 N -0.57 -22.18 2.96 -826.79 -2.45 -24.63 16 17 C 0.56 24.15 7.68 86.77 0.67 24.82 16 18 O -0.58 -28.76 14.72 -3.90 -0.06 -28.82 16 19 C 0.12 4.25 6.72 42.00 0.28 4.53 16 20 N -0.45 -12.54 6.00 -184.54 -1.11 -13.65 16 21 C 0.10 1.84 11.13 84.75 0.94 2.79 16 22 C -0.12 -2.00 10.13 22.46 0.23 -1.78 16 23 C 0.07 1.77 7.48 23.11 0.17 1.95 16 24 O -0.19 -4.31 10.57 -5.14 -0.05 -4.36 16 25 C 0.04 0.85 11.97 66.92 0.80 1.65 16 26 C -0.22 -7.19 10.32 23.44 0.24 -6.95 16 27 C -0.16 -5.48 6.16 -20.04 -0.12 -5.60 16 28 C 0.11 4.56 5.66 85.76 0.49 5.04 16 29 C 0.14 5.97 2.97 44.77 0.13 6.10 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.00 0.05 7.19 -2.38 -0.02 0.03 16 33 H 0.00 0.13 7.44 -2.39 -0.02 0.11 16 34 H 0.08 2.60 7.97 -2.39 -0.02 2.58 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.03 1.10 6.85 -2.39 -0.02 1.08 16 37 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.18 5.07 3.34 -104.61 -0.35 4.72 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.26 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.15 5.41 7.31 -2.91 -0.02 5.39 16 44 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.05 2.56 5.56 -2.39 -0.01 2.55 16 Total: -1.00 -87.27 353.56 3.49 -83.78 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.69 Total: 11.17 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.38 Total: 18.19 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -5.49 Total: -132.92 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.11 Total: -33.18 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.03 Total: 52.95 kcal Total: -87.27 3.49 -83.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042162011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.359 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds