Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48497 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47072 * 300.00481 * 3 2 1 6 6 H 1.48505 * 109.46905 * 59.99971 * 3 2 1 7 7 C 1.38808 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.39532 * 0.02562 * 9 7 2 11 11 C 1.55296 * 107.04032 * 175.02521 * 10 9 7 12 12 C 1.53692 * 101.85189 * 337.53561 * 11 10 9 13 13 H 1.08998 * 111.10358 * 281.43294 * 12 11 10 14 14 C 1.51973 * 115.01527 * 153.49257 * 12 11 10 15 15 C 1.53887 * 107.28769 * 184.54278 * 14 12 11 16 16 N 1.46597 * 110.70547 * 51.81529 * 15 14 12 17 17 C 1.34780 * 119.75562 * 132.27911 * 16 15 14 18 18 O 1.21572 * 119.99523 * 352.19421 * 17 16 15 19 19 C 1.47782 * 120.00366 * 172.20048 * 17 16 15 20 20 N 1.32814 * 120.07018 * 352.80163 * 19 17 16 21 21 C 1.31676 * 122.01362 * 179.97438 * 20 19 17 22 22 C 1.38400 * 121.69672 * 359.97438 * 21 20 19 23 23 C 1.38863 * 119.13444 * 0.02813 * 22 21 20 24 24 O 1.34422 * 134.63171 * 180.02562 * 23 22 21 25 25 C 1.34455 * 110.84698 * 179.32435 * 24 23 22 26 26 C 1.34300 * 110.16810 * 0.59008 * 25 24 23 27 27 C 1.40200 * 120.07225 * 172.52796 * 19 17 16 28 28 C 1.47899 * 119.98168 * 311.80312 * 16 15 14 29 29 C 1.45506 * 126.39981 * 180.02562 * 9 7 2 30 30 H 1.09001 * 109.57563 * 93.33799 * 29 9 7 31 31 H 0.96992 * 120.00658 * 0.02562 * 1 2 3 32 32 H 1.09009 * 109.91416 * 55.68007 * 10 9 7 33 33 H 1.08993 * 110.09339 * 294.47080 * 10 9 7 34 34 H 1.08998 * 110.96019 * 95.69163 * 11 10 9 35 35 H 1.09008 * 110.96173 * 219.38495 * 11 10 9 36 36 H 1.09004 * 109.89380 * 303.99032 * 14 12 11 37 37 H 1.08995 * 109.89339 * 65.10028 * 14 12 11 38 38 H 1.09003 * 109.23195 * 172.12618 * 15 14 12 39 39 H 1.08996 * 109.23302 * 291.49751 * 15 14 12 40 40 H 1.08000 * 119.15485 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.43311 * 180.02562 * 22 21 20 42 42 H 1.08008 * 124.91351 * 180.10015 * 25 24 23 43 43 H 1.08003 * 126.89702 * 179.55677 * 26 25 24 44 44 H 1.08996 * 110.46165 * 292.90169 * 28 16 15 45 45 H 1.09001 * 109.63270 * 171.35956 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1466 -2.5532 -0.0005 11 6 -0.4340 -4.0739 -0.1293 12 6 0.8680 -4.5886 -0.7634 13 1 0.8912 -4.3832 -1.8336 14 6 1.1966 -6.0424 -0.4663 15 6 2.5760 -6.3346 -1.0826 16 7 3.5596 -5.3383 -0.6478 17 6 4.7629 -5.7404 -0.1929 18 8 4.9794 -6.9226 -0.0100 19 6 5.8189 -4.7443 0.0837 20 7 5.6366 -3.4714 -0.2485 21 6 6.5513 -2.5523 -0.0195 22 6 7.7583 -2.8618 0.5828 23 6 8.0111 -4.1756 0.9546 24 8 9.0409 -4.8095 1.5416 25 6 8.7727 -6.1180 1.6949 26 6 7.5564 -6.4023 1.2015 27 6 7.0132 -5.1400 0.7025 28 6 3.2333 -3.8975 -0.7192 29 6 1.9083 -3.7214 -0.0005 30 1 1.9998 -4.0800 1.0247 31 1 -0.4851 0.8399 -0.0004 32 1 -0.5800 -2.0203 -0.8470 33 1 -0.5660 -2.1736 0.9311 34 1 -0.5955 -4.5245 0.8500 35 1 -1.2855 -4.2557 -0.7851 36 1 1.2304 -6.2022 0.6114 37 1 0.4449 -6.6917 -0.9150 38 1 2.9064 -7.3252 -0.7701 39 1 2.4963 -6.3098 -2.1694 40 1 6.3543 -1.5305 -0.3084 41 1 8.4940 -2.0915 0.7613 42 1 9.4421 -6.8380 2.1422 43 1 7.0756 -7.3691 1.1788 44 1 3.1403 -3.5789 -1.7574 45 1 4.0105 -3.3207 -0.2180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042162012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = 67.540198 kcal Electronic energy + Delta-G solvation = -30502.506378 eV Core-core repulsion = 26488.522796 eV Total energy + Delta-G solvation = -4013.983582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85937 -40.39218 -38.90891 -38.03592 -35.20004 -33.16497 -33.06481 -32.04253 -31.07855 -30.00938 -29.12395 -28.34743 -25.52745 -24.45265 -23.45950 -23.26969 -22.52693 -21.55771 -20.17808 -19.80284 -19.21130 -18.11114 -17.65857 -16.66701 -16.57287 -16.50140 -15.72615 -15.54656 -15.13422 -14.82705 -14.55668 -14.21590 -14.11825 -13.78510 -13.58416 -13.35544 -13.11140 -13.04385 -12.84370 -12.50096 -12.04519 -11.98987 -11.80159 -11.50800 -11.23946 -10.86980 -10.75810 -10.67774 -10.49460 -10.36653 -10.12209 -9.99588 -9.80834 -9.71897 -9.62541 -9.55661 -8.63654 -8.59531 -8.56776 -8.27390 -6.80962 -5.68540 -3.01510 0.21683 1.01430 2.09924 2.41237 2.74833 3.07590 3.40372 3.44095 3.48191 3.75749 4.04101 4.17856 4.35096 4.51928 4.70046 4.84762 5.02594 5.08106 5.11316 5.25248 5.26712 5.48652 5.51488 5.56206 5.67472 5.68575 5.74968 5.85559 5.87560 6.03107 6.05495 6.12955 6.16719 6.22853 6.26699 6.30180 6.53313 6.62625 6.70637 6.73282 6.77002 7.11139 7.14820 7.50554 7.59770 7.64825 7.70078 7.84791 8.24774 8.28893 9.22434 9.85932 10.54199 11.44215 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004428 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.268175 B = 6322.065252 C = 8605.744244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.117 4.117 15 C 0.109 3.891 16 N -0.580 5.580 17 C 0.569 3.431 18 O -0.544 6.544 19 C 0.141 3.859 20 N -0.440 5.440 21 C 0.111 3.889 22 C -0.137 4.137 23 C 0.080 3.920 24 O -0.189 6.189 25 C -0.002 4.002 26 C -0.173 4.173 27 C -0.136 4.136 28 C 0.075 3.925 29 C 0.155 3.845 30 H 0.020 0.980 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.179 0.821 41 H 0.149 0.851 42 H 0.214 0.786 43 H 0.172 0.828 44 H 0.069 0.931 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.395 -11.535 0.355 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.316 5.316 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.013 4.013 16 N -0.311 5.311 17 C 0.355 3.645 18 O -0.422 6.422 19 C -0.002 4.002 20 N -0.153 5.153 21 C -0.042 4.042 22 C -0.158 4.158 23 C 0.026 3.974 24 O -0.089 6.089 25 C -0.066 4.066 26 C -0.193 4.193 27 C -0.140 4.140 28 C -0.047 4.047 29 C 0.046 3.954 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.196 0.804 41 H 0.166 0.834 42 H 0.231 0.769 43 H 0.189 0.811 44 H 0.087 0.913 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.931 -11.506 0.133 17.309 hybrid contribution 0.923 0.702 0.376 1.219 sum 13.853 -10.804 0.509 17.576 Atomic orbital electron populations 1.69950 1.04886 1.24796 1.57371 1.24780 0.95643 0.97543 1.02547 0.86101 0.78754 0.84097 0.77158 1.20434 1.21886 1.21961 1.19087 0.90457 0.82172 1.43177 0.90088 1.44156 1.01588 0.99238 1.86615 1.21524 0.83781 0.88458 1.00881 1.22733 0.96098 0.99663 0.99206 1.22316 0.97426 0.93594 1.00174 0.90511 1.21770 0.95303 0.97274 1.01182 1.21646 0.88570 0.92532 0.98601 1.48197 1.12934 1.09056 1.60934 1.17697 0.82006 0.86935 0.77820 1.90712 1.80968 1.16787 1.53758 1.20789 0.92320 0.91081 0.95970 1.67983 1.29025 1.00224 1.18070 1.22943 0.87488 0.99923 0.93839 1.21210 1.00143 0.92264 1.02135 1.19714 0.86581 0.94272 0.96859 1.83966 1.38528 1.21077 1.65370 1.24231 0.98175 0.82076 1.02101 1.22680 0.95195 0.98682 1.02777 1.20571 0.95573 0.94853 1.03028 1.23171 1.01034 0.77975 1.02529 1.21029 0.91607 0.87372 0.95402 0.96242 0.93903 0.92709 0.94542 0.92684 0.92356 0.91541 0.90968 0.89458 0.91781 0.80359 0.83354 0.76942 0.81056 0.91254 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.44 55.49 0.58 -26.08 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -5.88 9.88 -15.06 -0.15 -6.03 16 8 H 0.08 2.06 7.43 -52.49 -0.39 1.67 16 9 N -0.59 -14.69 3.35 -162.88 -0.55 -15.23 16 10 C 0.18 4.28 5.45 -1.91 -0.01 4.27 16 11 C -0.14 -2.60 6.54 -25.15 -0.16 -2.77 16 12 C -0.12 -2.05 2.60 -89.48 -0.23 -2.28 16 13 H 0.08 1.41 8.12 -51.93 -0.42 0.98 16 14 C -0.12 -1.71 5.72 -26.79 -0.15 -1.86 16 15 C 0.11 1.61 6.35 -3.53 -0.02 1.59 16 16 N -0.58 -9.85 3.00 -173.80 -0.52 -10.38 16 17 C 0.57 9.87 7.63 -12.36 -0.09 9.77 16 18 O -0.54 -9.84 14.60 5.30 0.08 -9.77 16 19 C 0.14 2.29 6.63 -82.80 -0.55 1.74 16 20 N -0.44 -6.91 6.04 -9.68 -0.06 -6.97 16 21 C 0.11 1.40 11.13 -17.56 -0.20 1.21 16 22 C -0.14 -1.53 10.13 -39.29 -0.40 -1.93 16 23 C 0.08 1.03 7.48 -38.28 -0.29 0.74 16 24 O -0.19 -2.15 10.57 4.97 0.05 -2.10 16 25 C 0.00 -0.01 11.97 29.34 0.35 0.34 16 26 C -0.17 -2.09 10.32 -37.78 -0.39 -2.48 16 27 C -0.14 -1.98 6.16 -104.90 -0.65 -2.62 16 28 C 0.07 1.40 5.11 -3.91 -0.02 1.38 16 29 C 0.15 3.21 2.79 -67.80 -0.19 3.02 16 30 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 1.45 7.21 -51.92 -0.37 1.08 16 33 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 34 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.26 6.92 -51.93 -0.36 0.91 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.21 0.93 8.06 -52.48 -0.42 0.50 16 43 H 0.17 2.02 7.32 -52.48 -0.38 1.63 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.15 2.85 3.78 -86.21 -0.33 2.52 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -32.37 357.91 -9.29 -41.67 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.00 Total: 3.31 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.24 Total: 3.73 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.55 Total: -58.66 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.13 Total: -11.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.37 -9.29 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042162012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.207 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds