Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00066 * 2 1 4 4 H 1.48504 * 109.47374 * 240.00201 * 3 2 1 5 5 H 1.48500 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47183 * 120.00169 * 3 2 1 7 7 C 1.38817 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99527 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.46881 * 125.58289 * 359.97438 * 9 7 2 11 11 C 1.54055 * 107.70772 * 177.04772 * 10 9 7 12 12 C 1.54068 * 103.74634 * 342.87619 * 11 10 9 13 13 H 1.08999 * 109.15532 * 274.18549 * 12 11 10 14 14 C 1.47778 * 125.61927 * 179.97438 * 9 7 2 15 15 H 1.08993 * 111.35011 * 322.06792 * 14 9 7 16 16 C 1.52927 * 107.92976 * 83.52488 * 14 9 7 17 17 C 1.52945 * 109.74001 * 171.87913 * 16 14 9 18 18 C 1.53053 * 108.49261 * 294.03178 * 17 16 14 19 19 N 1.44188 * 111.76433 * 153.24956 * 12 11 10 20 20 C 1.34782 * 117.76019 * 93.53487 * 19 12 11 21 21 O 1.21649 * 119.99938 * 173.91542 * 20 19 12 22 22 C 1.46977 * 119.99845 * 353.91271 * 20 19 12 23 23 C 1.35847 * 125.11835 * 173.19752 * 22 20 19 24 24 C 1.46106 * 106.06989 * 179.89779 * 23 22 20 25 25 C 1.39445 * 135.07641 * 180.08168 * 24 23 22 26 26 N 1.31680 * 120.07644 * 180.28063 * 25 24 23 27 27 C 1.32308 * 122.14060 * 0.02636 * 26 25 24 28 28 C 1.37760 * 121.58314 * 0.03728 * 27 26 25 29 29 C 1.39241 * 118.95353 * 359.90378 * 28 27 26 30 30 O 1.34277 * 134.37373 * 180.02562 * 29 28 27 31 31 H 0.97002 * 119.99661 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.81066 * 57.50191 * 10 9 7 33 33 H 1.08994 * 109.86905 * 296.62765 * 10 9 7 34 34 H 1.09004 * 110.57077 * 224.30705 * 11 10 9 35 35 H 1.09002 * 110.56974 * 101.44143 * 11 10 9 36 36 H 1.08999 * 109.42219 * 51.81549 * 16 14 9 37 37 H 1.09001 * 109.41678 * 291.94148 * 16 14 9 38 38 H 1.08998 * 109.63363 * 53.73999 * 17 16 14 39 39 H 1.09010 * 109.63105 * 174.13090 * 17 16 14 40 40 H 1.08997 * 109.45611 * 173.83807 * 18 17 16 41 41 H 1.09000 * 109.45607 * 293.79132 * 18 17 16 42 42 H 1.07993 * 126.96852 * 0.02562 * 23 22 20 43 43 H 1.08003 * 119.96401 * 0.30838 * 25 24 23 44 44 H 1.07997 * 119.21145 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.51842 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1363 -2.5309 0.0005 11 6 -0.4602 -4.0351 -0.0755 12 6 0.8585 -4.6696 -0.5572 13 1 0.8954 -4.6348 -1.6460 14 6 1.9355 -3.7341 -0.0016 15 1 2.8281 -3.7647 -0.6263 16 6 2.2804 -4.0958 1.4437 17 6 2.7272 -5.5566 1.5180 18 6 1.5341 -6.4477 1.1645 19 7 0.9837 -6.0383 -0.1213 20 6 0.5634 -7.0054 -0.9608 21 8 0.7505 -8.1751 -0.6835 22 6 -0.1209 -6.6469 -2.2111 23 6 -0.4696 -7.5221 -3.1898 24 6 -1.1214 -6.7281 -4.2289 25 6 -1.6996 -7.0061 -5.4670 26 7 -2.2145 -6.0323 -6.1885 27 6 -2.2060 -4.7738 -5.7804 28 6 -1.6542 -4.4110 -4.5714 29 6 -1.0951 -5.3969 -3.7627 30 8 -0.4922 -5.3970 -2.5628 31 1 -0.4850 0.8401 0.0004 32 1 -0.5582 -2.0180 -0.8638 33 1 -0.5489 -2.1100 0.9174 34 1 -1.2588 -4.2190 -0.7942 35 1 -0.7328 -4.4183 0.9079 36 1 1.4016 -3.9532 2.0726 37 1 3.0864 -3.4520 1.7959 38 1 3.5361 -5.7288 0.8081 39 1 3.0712 -5.7835 2.5272 40 1 1.8611 -7.4858 1.1056 41 1 0.7684 -6.3516 1.9343 42 1 -0.3013 -8.5887 -3.1974 43 1 -1.7257 -8.0214 -5.8344 44 1 -2.6413 -4.0124 -6.4106 45 1 -1.6571 -3.3783 -4.2550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049573626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = 51.299529 kcal Electronic energy + Delta-G solvation = -30722.869058 eV Core-core repulsion = 26708.181228 eV Total energy + Delta-G solvation = -4014.687830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.91412 -40.47620 -39.02900 -38.25597 -35.23856 -33.31699 -33.06524 -32.19184 -31.74801 -30.08535 -29.05965 -28.46416 -25.67219 -24.64252 -24.04948 -23.37645 -22.25556 -21.70124 -20.86670 -20.13769 -18.98719 -18.33306 -17.57062 -17.01619 -16.54290 -16.27338 -15.80919 -15.51663 -15.04059 -14.86936 -14.71605 -14.59889 -14.11388 -13.87436 -13.63802 -13.58259 -13.45814 -13.25343 -12.95023 -12.66656 -12.13298 -11.98669 -11.74707 -11.46412 -11.13439 -10.99776 -10.84252 -10.73894 -10.59798 -10.54141 -10.39890 -10.18668 -9.99373 -9.90277 -9.73967 -9.71044 -9.44941 -8.71108 -8.66554 -8.38706 -6.95435 -5.78961 -3.13964 0.27535 1.09021 1.57904 2.22580 2.95441 3.02821 3.35419 3.40300 3.41093 3.57172 4.02877 4.20040 4.30160 4.42574 4.68061 4.72900 4.90169 5.04208 5.13294 5.17263 5.18973 5.26038 5.42093 5.44955 5.50577 5.53032 5.54059 5.63960 5.76253 5.85151 5.95222 5.99437 6.05515 6.14250 6.18659 6.22245 6.24716 6.41379 6.46568 6.65133 6.68806 6.79840 6.94598 7.31943 7.48211 7.52917 7.71687 7.74262 7.93640 8.16499 9.12991 9.72321 10.36687 11.31808 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.004433 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.822346 B = 6314.869565 C = 8619.309857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.182 3.818 11 C -0.150 4.150 12 C 0.121 3.879 13 H 0.099 0.901 14 C 0.163 3.837 15 H 0.055 0.945 16 C -0.132 4.132 17 C -0.132 4.132 18 C 0.113 3.887 19 N -0.571 5.571 20 C 0.589 3.411 21 O -0.525 6.525 22 C -0.019 4.019 23 C -0.104 4.104 24 C -0.201 4.201 25 C 0.169 3.831 26 N -0.496 5.496 27 C 0.113 3.887 28 C -0.154 4.154 29 C 0.100 3.900 30 O -0.157 6.157 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -13.414 -5.451 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.057 3.943 11 C -0.189 4.189 12 C 0.017 3.983 13 H 0.116 0.884 14 C 0.054 3.946 15 H 0.073 0.927 16 C -0.172 4.172 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.301 5.301 20 C 0.376 3.624 21 O -0.404 6.404 22 C -0.069 4.069 23 C -0.126 4.126 24 C -0.204 4.204 25 C 0.005 3.995 26 N -0.206 5.206 27 C -0.036 4.036 28 C -0.174 4.174 29 C 0.045 3.955 30 O -0.057 6.057 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.191 0.809 43 H 0.181 0.819 44 H 0.186 0.814 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.246 -13.568 -5.877 14.956 hybrid contribution 0.742 1.229 0.877 1.682 sum -1.503 -12.339 -5.001 13.398 Atomic orbital electron populations 1.69952 1.04873 1.25256 1.56658 1.24783 0.95692 0.97608 1.01955 0.86208 0.78487 0.83160 0.77939 1.21131 1.21568 1.21147 1.18965 0.90414 0.82064 1.44315 0.90432 1.44496 1.01421 0.99102 1.86819 1.21041 0.84254 0.87687 1.01357 1.23068 0.96016 0.99666 1.00193 1.21598 0.97822 0.79295 0.99598 0.88372 1.20870 0.93676 0.86042 0.93984 0.92662 1.22146 1.01680 0.93615 0.99779 1.21859 0.96991 0.96512 1.01669 1.21459 0.96161 0.99851 0.83347 1.47082 1.59456 1.06563 1.16957 1.16920 0.78744 0.85561 0.81141 1.90838 1.57509 1.17715 1.74337 1.22125 1.04574 0.82311 0.97844 1.22614 0.98646 1.00461 0.90844 1.20951 1.06687 0.93867 0.98916 1.22398 0.90351 0.98956 0.87787 1.67790 1.17862 1.00705 1.34215 1.22608 0.94905 0.93344 0.92727 1.21201 1.01748 0.99899 0.94535 1.20057 0.94602 0.95269 0.85593 1.84522 1.61283 1.28951 1.30926 0.93624 0.92910 0.94069 0.91711 0.92372 0.91846 0.91616 0.91659 0.90785 0.89016 0.91566 0.80880 0.81861 0.81382 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.29 55.49 0.57 -25.27 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.11 2.94 -163.74 -0.48 -14.59 16 10 C 0.18 4.18 5.39 -3.28 -0.02 4.16 16 11 C -0.15 -2.76 6.18 -25.62 -0.16 -2.92 16 12 C 0.12 2.10 2.23 -68.55 -0.15 1.94 16 13 H 0.10 1.78 5.07 -51.93 -0.26 1.51 16 14 C 0.16 3.14 3.29 -67.22 -0.22 2.92 16 15 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -2.24 5.31 -26.80 -0.14 -2.38 16 17 C -0.13 -1.75 6.10 -26.73 -0.16 -1.91 16 18 C 0.11 1.54 6.29 -4.43 -0.03 1.52 16 19 N -0.57 -8.84 2.80 -169.08 -0.47 -9.31 16 20 C 0.59 9.19 7.55 -12.72 -0.10 9.10 16 21 O -0.52 -8.79 16.04 5.23 0.08 -8.70 16 22 C -0.02 -0.28 6.57 -36.90 -0.24 -0.52 16 23 C -0.10 -1.29 10.81 -37.28 -0.40 -1.69 16 24 C -0.20 -2.50 6.43 -105.22 -0.68 -3.17 16 25 C 0.17 1.83 11.28 -17.17 -0.19 1.64 16 26 N -0.50 -5.80 10.34 -13.00 -0.13 -5.93 16 27 C 0.11 1.22 11.13 -17.52 -0.20 1.02 16 28 C -0.15 -1.86 10.13 -39.38 -0.40 -2.26 16 29 C 0.10 1.40 7.48 -38.13 -0.29 1.12 16 30 O -0.16 -2.41 5.50 3.70 0.02 -2.39 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 33 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 34 H 0.06 1.14 6.70 -51.93 -0.35 0.79 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.09 1.20 6.90 -51.93 -0.36 0.84 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -30.28 359.47 -9.57 -39.86 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.93 Total: 2.45 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.62 Total: 2.17 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.52 Total: -55.10 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.10 Total: -11.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.28 -9.57 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.159 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds