Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00389 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00118 * 3 2 1 5 5 H 1.48502 * 109.46814 * 29.99733 * 3 2 1 6 6 H 1.48493 * 109.47615 * 149.99887 * 3 2 1 7 7 C 1.38814 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.47531 * 126.55210 * 0.64630 * 9 7 2 11 11 C 1.55462 * 107.04365 * 185.44734 * 10 9 7 12 12 C 1.53430 * 101.67398 * 22.17937 * 11 10 9 13 13 H 1.09008 * 111.74836 * 78.23129 * 12 11 10 14 14 C 1.45026 * 126.56086 * 179.97438 * 9 7 2 15 15 H 1.08999 * 108.26375 * 263.89954 * 14 9 7 16 16 C 1.51085 * 119.18686 * 28.76769 * 14 9 7 17 17 C 1.53868 * 107.34241 * 183.88483 * 16 14 9 18 18 C 1.52710 * 111.52924 * 303.08107 * 17 16 14 19 19 N 1.45728 * 116.38225 * 207.27092 * 12 11 10 20 20 C 1.34777 * 122.22752 * 350.14355 * 19 12 11 21 21 O 1.21656 * 119.99957 * 6.56888 * 20 19 12 22 22 C 1.46976 * 120.00024 * 186.57077 * 20 19 12 23 23 C 1.35851 * 125.12346 * 187.11339 * 22 20 19 24 24 C 1.46089 * 106.07293 * 180.02562 * 23 22 20 25 25 C 1.39447 * 135.07399 * 179.97438 * 24 23 22 26 26 N 1.31680 * 120.07399 * 180.02562 * 25 24 23 27 27 C 1.32300 * 122.14318 * 359.97438 * 26 25 24 28 28 C 1.37759 * 121.58520 * 0.21424 * 27 26 25 29 29 C 1.39237 * 118.95125 * 359.60078 * 28 27 26 30 30 O 1.34286 * 134.37679 * 180.02562 * 29 28 27 31 31 H 0.97002 * 120.00057 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.27156 * 65.84700 * 10 9 7 33 33 H 1.08999 * 109.57577 * 304.65861 * 10 9 7 34 34 H 1.09005 * 110.98952 * 264.08988 * 11 10 9 35 35 H 1.08997 * 111.02242 * 140.29457 * 11 10 9 36 36 H 1.09002 * 109.88210 * 64.43310 * 16 14 9 37 37 H 1.08992 * 109.94611 * 303.38309 * 16 14 9 38 38 H 1.08997 * 109.07189 * 182.54656 * 17 16 14 39 39 H 1.09002 * 109.01282 * 63.56837 * 17 16 14 40 40 H 1.08999 * 109.16206 * 288.12184 * 18 17 16 41 41 H 1.09008 * 109.11987 * 168.90458 * 18 17 16 42 42 H 1.08008 * 126.95951 * 359.95814 * 23 22 20 43 43 H 1.07999 * 119.96550 * 0.04394 * 25 24 23 44 44 H 1.08002 * 119.20873 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.52225 * 179.67108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1401 -2.5563 -0.0134 11 6 -0.4255 -4.0774 0.1338 12 6 0.8730 -4.5757 0.7815 13 1 0.9028 -4.3549 1.8486 14 6 1.9023 -3.7186 0.0005 15 1 1.9372 -4.0758 -1.0287 16 6 3.2562 -3.9348 0.6353 17 6 3.6452 -5.4042 0.3969 18 6 2.5922 -6.3601 0.9533 19 7 1.2342 -5.9638 0.5235 20 6 0.3890 -6.8273 -0.0735 21 8 -0.6688 -6.4298 -0.5240 22 6 0.7454 -8.2492 -0.1804 23 6 0.0429 -9.1809 -0.8760 24 6 0.7602 -10.4416 -0.7017 25 6 0.5754 -11.7517 -1.1422 26 7 1.4313 -12.6909 -0.7968 27 6 2.4823 -12.4393 -0.0335 28 6 2.7379 -11.1743 0.4482 29 6 1.8705 -10.1377 0.1138 30 8 1.8200 -8.8264 0.3989 31 1 -0.4850 0.8401 0.0004 32 1 -0.5535 -2.1893 -0.9527 33 1 -0.5781 -2.0128 0.8238 34 1 -0.5790 -4.5419 -0.8403 35 1 -1.2802 -4.2535 0.7869 36 1 3.1999 -3.7352 1.7055 37 1 3.9924 -3.2768 0.1739 38 1 4.5998 -5.6034 0.8838 39 1 3.7499 -5.5745 -0.6746 40 1 2.6394 -6.3498 2.0422 41 1 2.8009 -7.3685 0.5957 42 1 -0.8630 -9.0220 -1.4422 43 1 -0.2705 -11.9963 -1.7675 44 1 3.1539 -13.2459 0.2212 45 1 3.5982 -10.9893 1.0743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049573628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 60.510014 kcal Electronic energy + Delta-G solvation = -29955.907890 eV Core-core repulsion = 25941.619456 eV Total energy + Delta-G solvation = -4014.288433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.07408 -40.42650 -39.28905 -37.92155 -35.58323 -33.35447 -32.74655 -32.40820 -31.93455 -30.30128 -28.93116 -28.32669 -25.75452 -24.58528 -24.20112 -23.50844 -22.14828 -21.57675 -21.04857 -20.11690 -19.53012 -18.43195 -17.54901 -16.90259 -16.64855 -16.22951 -15.86252 -15.42178 -15.13003 -14.90388 -14.72238 -14.62446 -14.28923 -13.95942 -13.79674 -13.70764 -13.50267 -13.36316 -12.97394 -12.57102 -12.33117 -12.00517 -11.89539 -11.59690 -11.15375 -10.92194 -10.77791 -10.73305 -10.63312 -10.51724 -10.14249 -10.11084 -10.06618 -9.91917 -9.78311 -9.66389 -9.32613 -8.79286 -8.61212 -8.38159 -6.86146 -5.72511 -3.07357 0.10323 0.84788 1.46071 1.99216 2.88704 3.04712 3.34786 3.38819 3.43536 3.45679 3.88699 3.99415 4.12007 4.46856 4.47959 4.55852 4.67059 4.87610 4.99710 5.04195 5.21562 5.26036 5.28617 5.32715 5.40205 5.44307 5.56446 5.66499 5.77176 5.79096 5.85028 5.91031 5.96494 6.02077 6.18892 6.23034 6.33327 6.42311 6.53207 6.65645 6.70655 6.82430 7.08924 7.41126 7.50217 7.56367 7.63364 7.81399 8.04047 8.23570 9.17832 9.80782 10.47972 11.39211 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002617 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.643533 B =10696.347133 C =11430.423670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.173 3.827 11 C -0.137 4.137 12 C 0.114 3.886 13 H 0.087 0.913 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.101 3.899 19 N -0.585 5.585 20 C 0.595 3.405 21 O -0.502 6.502 22 C -0.013 4.013 23 C -0.105 4.105 24 C -0.196 4.196 25 C 0.173 3.827 26 N -0.495 5.495 27 C 0.114 3.886 28 C -0.160 4.160 29 C 0.094 3.906 30 O -0.172 6.172 31 H 0.253 0.747 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 -23.214 1.826 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.175 4.175 12 C 0.011 3.989 13 H 0.104 0.896 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.021 4.021 19 N -0.316 5.316 20 C 0.381 3.619 21 O -0.380 6.380 22 C -0.063 4.063 23 C -0.127 4.127 24 C -0.199 4.199 25 C 0.009 3.991 26 N -0.205 5.205 27 C -0.036 4.036 28 C -0.180 4.180 29 C 0.039 3.961 30 O -0.072 6.072 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.194 0.806 43 H 0.184 0.816 44 H 0.186 0.814 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.791 -23.419 1.518 23.952 hybrid contribution 0.664 1.721 0.315 1.871 sum 5.455 -21.698 1.833 22.448 Atomic orbital electron populations 1.69941 1.04895 1.25132 1.56651 1.24813 0.95684 0.97667 1.02135 0.86140 0.78567 0.83587 0.77571 1.21617 1.21669 1.20700 1.18978 0.90356 0.82130 1.44143 0.90321 1.43881 1.01851 0.99305 1.86506 1.21592 0.83797 0.88549 1.01230 1.23098 0.94378 0.98327 1.01710 1.22486 0.99305 0.77426 0.99712 0.89557 1.20692 0.91366 0.87275 0.95758 0.96424 1.21438 0.98506 0.94112 1.01398 1.21903 0.97610 0.95578 1.01610 1.22111 0.80921 0.99152 0.99936 1.47932 1.14474 1.11489 1.57662 1.16764 0.84264 0.81511 0.79319 1.90901 1.23902 1.75335 1.47814 1.22546 0.88562 0.94739 1.00432 1.22684 1.00845 0.88774 1.00371 1.20968 0.98181 0.96541 1.04245 1.22472 0.96567 0.85784 0.94234 1.67807 1.03963 1.35218 1.13531 1.22611 0.94122 0.94548 0.92290 1.21060 1.01149 0.90503 1.05334 1.20066 0.96309 0.83743 0.96011 1.84247 1.41836 1.18846 1.62287 0.93666 0.94256 0.92415 0.89359 0.91974 0.91620 0.91241 0.90630 0.91804 0.91118 0.88663 0.80614 0.81624 0.81432 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.45 55.49 0.58 -26.34 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.20 9.94 -15.06 -0.15 -6.35 16 8 H 0.08 2.05 7.31 -52.49 -0.38 1.66 16 9 N -0.59 -14.87 3.33 -164.26 -0.55 -15.42 16 10 C 0.17 4.29 5.45 -2.17 -0.01 4.27 16 11 C -0.14 -2.81 5.13 -25.20 -0.13 -2.94 16 12 C 0.11 2.11 3.32 -67.04 -0.22 1.89 16 13 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 14 C 0.16 3.24 2.55 -68.60 -0.17 3.06 16 15 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 16 C -0.12 -1.94 5.45 -27.24 -0.15 -2.08 16 17 C -0.13 -1.63 5.93 -26.43 -0.16 -1.78 16 18 C 0.10 1.25 6.08 -3.45 -0.02 1.23 16 19 N -0.58 -9.12 2.92 -165.69 -0.48 -9.60 16 20 C 0.60 9.40 7.68 -12.72 -0.10 9.30 16 21 O -0.50 -9.19 13.55 5.23 0.07 -9.12 16 22 C -0.01 -0.18 6.77 -36.90 -0.25 -0.42 16 23 C -0.10 -1.18 10.81 -37.29 -0.40 -1.58 16 24 C -0.20 -2.04 6.43 -105.22 -0.68 -2.71 16 25 C 0.17 1.54 11.28 -17.17 -0.19 1.35 16 26 N -0.50 -4.63 10.34 -13.00 -0.13 -4.77 16 27 C 0.11 0.85 11.13 -17.53 -0.20 0.66 16 28 C -0.16 -1.25 10.13 -39.39 -0.40 -1.65 16 29 C 0.09 0.99 7.48 -38.13 -0.29 0.70 16 30 O -0.17 -2.00 7.18 3.68 0.03 -1.97 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.04 1.07 7.82 -51.93 -0.41 0.67 16 33 H 0.06 1.56 7.14 -51.93 -0.37 1.19 16 34 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.07 4.41 -52.32 -0.23 0.84 16 42 H 0.18 1.71 8.06 -52.48 -0.42 1.28 16 43 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -32.21 357.49 -9.62 -41.82 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.88 Total: 0.49 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.61 Total: 2.65 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.58 Total: -56.13 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.10 Total: -11.09 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.21 -9.62 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.334 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds