Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00389 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00118 * 3 2 1 5 5 H 1.48502 * 109.46814 * 29.99733 * 3 2 1 6 6 H 1.48493 * 109.47615 * 149.99887 * 3 2 1 7 7 C 1.38814 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.47531 * 126.55210 * 0.64630 * 9 7 2 11 11 C 1.55462 * 107.04365 * 185.44734 * 10 9 7 12 12 C 1.53430 * 101.67398 * 22.17937 * 11 10 9 13 13 H 1.09008 * 111.74836 * 78.23129 * 12 11 10 14 14 C 1.45026 * 126.56086 * 179.97438 * 9 7 2 15 15 H 1.08999 * 108.26375 * 263.89954 * 14 9 7 16 16 C 1.51085 * 119.18686 * 28.76769 * 14 9 7 17 17 C 1.53868 * 107.34241 * 183.88483 * 16 14 9 18 18 C 1.52710 * 111.52924 * 303.08107 * 17 16 14 19 19 N 1.45728 * 116.38225 * 207.27092 * 12 11 10 20 20 C 1.34777 * 122.22752 * 350.14355 * 19 12 11 21 21 O 1.21656 * 119.99957 * 6.56888 * 20 19 12 22 22 C 1.46976 * 120.00024 * 186.57077 * 20 19 12 23 23 C 1.35851 * 125.12346 * 187.11339 * 22 20 19 24 24 C 1.46089 * 106.07293 * 180.02562 * 23 22 20 25 25 C 1.39447 * 135.07399 * 179.97438 * 24 23 22 26 26 N 1.31680 * 120.07399 * 180.02562 * 25 24 23 27 27 C 1.32300 * 122.14318 * 359.97438 * 26 25 24 28 28 C 1.37759 * 121.58520 * 0.21424 * 27 26 25 29 29 C 1.39237 * 118.95125 * 359.60078 * 28 27 26 30 30 O 1.34286 * 134.37679 * 180.02562 * 29 28 27 31 31 H 0.97002 * 120.00057 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.27156 * 65.84700 * 10 9 7 33 33 H 1.08999 * 109.57577 * 304.65861 * 10 9 7 34 34 H 1.09005 * 110.98952 * 264.08988 * 11 10 9 35 35 H 1.08997 * 111.02242 * 140.29457 * 11 10 9 36 36 H 1.09002 * 109.88210 * 64.43310 * 16 14 9 37 37 H 1.08992 * 109.94611 * 303.38309 * 16 14 9 38 38 H 1.08997 * 109.07189 * 182.54656 * 17 16 14 39 39 H 1.09002 * 109.01282 * 63.56837 * 17 16 14 40 40 H 1.08999 * 109.16206 * 288.12184 * 18 17 16 41 41 H 1.09008 * 109.11987 * 168.90458 * 18 17 16 42 42 H 1.08008 * 126.95951 * 359.95814 * 23 22 20 43 43 H 1.07999 * 119.96550 * 0.04394 * 25 24 23 44 44 H 1.08002 * 119.20873 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.52225 * 179.67108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1401 -2.5563 -0.0134 11 6 -0.4255 -4.0774 0.1338 12 6 0.8730 -4.5757 0.7815 13 1 0.9028 -4.3549 1.8486 14 6 1.9023 -3.7186 0.0005 15 1 1.9372 -4.0758 -1.0287 16 6 3.2562 -3.9348 0.6353 17 6 3.6452 -5.4042 0.3969 18 6 2.5922 -6.3601 0.9533 19 7 1.2342 -5.9638 0.5235 20 6 0.3890 -6.8273 -0.0735 21 8 -0.6688 -6.4298 -0.5240 22 6 0.7454 -8.2492 -0.1804 23 6 0.0429 -9.1809 -0.8760 24 6 0.7602 -10.4416 -0.7017 25 6 0.5754 -11.7517 -1.1422 26 7 1.4313 -12.6909 -0.7968 27 6 2.4823 -12.4393 -0.0335 28 6 2.7379 -11.1743 0.4482 29 6 1.8705 -10.1377 0.1138 30 8 1.8200 -8.8264 0.3989 31 1 -0.4850 0.8401 0.0004 32 1 -0.5535 -2.1893 -0.9527 33 1 -0.5781 -2.0128 0.8238 34 1 -0.5790 -4.5419 -0.8403 35 1 -1.2802 -4.2535 0.7869 36 1 3.1999 -3.7352 1.7055 37 1 3.9924 -3.2768 0.1739 38 1 4.5998 -5.6034 0.8838 39 1 3.7499 -5.5745 -0.6746 40 1 2.6394 -6.3498 2.0422 41 1 2.8009 -7.3685 0.5957 42 1 -0.8630 -9.0220 -1.4422 43 1 -0.2705 -11.9963 -1.7675 44 1 3.1539 -13.2459 0.2212 45 1 3.5982 -10.9893 1.0743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049573628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 40.808468 kcal Electronic energy + Delta-G solvation = -29956.762213 eV Core-core repulsion = 25941.619456 eV Total energy + Delta-G solvation = -4015.142757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.87963 -41.74675 -40.04059 -39.32849 -37.09626 -34.35116 -34.16507 -33.94822 -32.74034 -31.40376 -30.50077 -29.80193 -26.98269 -26.34751 -25.26235 -24.34125 -23.10976 -22.91892 -22.36250 -21.64161 -20.92521 -19.20226 -18.87034 -18.23012 -17.77231 -17.34059 -16.88319 -16.71921 -16.41874 -16.33422 -15.93317 -15.64928 -15.49328 -15.33842 -15.06039 -14.66814 -14.46137 -14.42618 -14.31516 -14.08285 -13.90757 -13.46070 -13.19016 -12.91266 -12.74555 -12.63163 -12.42825 -12.10065 -11.98716 -11.83804 -11.76396 -11.61190 -11.51560 -11.44212 -10.89364 -10.75268 -10.65409 -10.51221 -9.81626 -9.44926 -8.93006 -7.84976 -5.22401 -0.67088 0.14852 0.61698 1.10118 1.45855 1.48008 1.56567 1.75563 1.93355 2.49513 2.70239 2.98516 3.31002 3.33419 3.37954 3.47919 3.73283 3.77432 3.84845 3.94464 3.97584 4.00314 4.11646 4.22651 4.26747 4.32045 4.51597 4.53270 4.57166 4.61943 4.67560 4.74470 4.84976 4.93165 4.98659 5.00842 5.04892 5.10643 5.24057 5.32318 5.36608 5.46839 5.54470 5.58165 5.70998 5.73790 6.17317 6.22534 6.81647 6.87655 7.05603 7.74889 8.43435 9.26468 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002617 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.643533 B =10696.347133 C =11430.423670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.234 4.234 8 H 0.090 0.910 9 N -0.610 5.610 10 C 0.183 3.817 11 C -0.120 4.120 12 C 0.131 3.869 13 H 0.091 0.909 14 C 0.152 3.848 15 H -0.002 1.002 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.099 3.901 19 N -0.588 5.588 20 C 0.594 3.406 21 O -0.539 6.539 22 C -0.038 4.038 23 C -0.088 4.088 24 C -0.214 4.214 25 C 0.175 3.825 26 N -0.513 5.513 27 C 0.120 3.880 28 C -0.158 4.158 29 C 0.082 3.918 30 O -0.173 6.173 31 H 0.247 0.753 32 H -0.001 1.001 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.204 0.796 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -26.323 2.784 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.334 5.334 10 C 0.058 3.942 11 C -0.159 4.159 12 C 0.026 3.974 13 H 0.109 0.891 14 C 0.044 3.956 15 H 0.016 0.984 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.022 4.022 19 N -0.318 5.318 20 C 0.382 3.618 21 O -0.419 6.419 22 C -0.087 4.087 23 C -0.110 4.110 24 C -0.218 4.218 25 C 0.011 3.989 26 N -0.224 5.224 27 C -0.029 4.029 28 C -0.178 4.178 29 C 0.027 3.973 30 O -0.074 6.074 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.202 0.798 43 H 0.205 0.795 44 H 0.220 0.780 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.606 -26.585 2.484 27.763 hybrid contribution -0.170 2.477 -0.043 2.484 sum 7.436 -24.108 2.441 25.346 Atomic orbital electron populations 1.70171 1.06494 1.25327 1.58306 1.25699 0.96550 1.01186 1.02702 0.85066 0.77825 0.79052 0.77325 1.21648 1.22263 1.18778 1.19406 0.91061 0.83041 1.42702 0.89258 1.44140 1.02143 1.00818 1.86342 1.21293 0.84016 0.91038 0.97879 1.22843 0.96099 0.95133 1.01814 1.22076 0.96825 0.79266 0.99209 0.89123 1.20863 0.94258 0.85103 0.95354 0.98432 1.21407 0.95571 0.97009 1.00947 1.21872 0.99356 0.92441 1.01948 1.22365 0.78799 0.99807 1.01181 1.47964 1.15952 1.10024 1.57876 1.17030 0.83712 0.82653 0.78357 1.90868 1.25329 1.76457 1.49258 1.21853 0.90384 0.93456 1.02974 1.22919 1.00417 0.89001 0.98638 1.21057 0.98554 0.96756 1.05385 1.22853 0.97055 0.85095 0.93869 1.67901 1.04744 1.35415 1.14294 1.23267 0.93617 0.95389 0.90626 1.21451 1.01453 0.89658 1.05269 1.20522 0.97028 0.83531 0.96220 1.84144 1.41285 1.19534 1.62462 0.94422 0.98243 0.95349 0.90222 0.91230 0.91256 0.92127 0.86739 0.92235 0.89125 0.86925 0.79794 0.79475 0.77970 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 10.45 21.65 0.23 -58.40 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.23 -12.98 9.94 84.03 0.84 -12.14 16 8 H 0.09 4.65 7.31 -2.91 -0.02 4.63 16 9 N -0.61 -31.87 3.33 -673.59 -2.24 -34.11 16 10 C 0.18 9.68 5.45 87.03 0.47 10.15 16 11 C -0.12 -5.19 5.13 31.59 0.16 -5.03 16 12 C 0.13 4.88 3.32 45.98 0.15 5.04 16 13 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 14 C 0.15 6.32 2.55 45.34 0.12 6.43 16 15 H 0.00 -0.08 8.05 -2.39 -0.02 -0.10 16 16 C -0.11 -3.56 5.45 30.26 0.16 -3.39 16 17 C -0.12 -2.65 5.93 30.79 0.18 -2.47 16 18 C 0.10 2.18 6.08 86.02 0.52 2.71 16 19 N -0.59 -17.88 2.92 -796.36 -2.33 -20.20 16 20 C 0.59 18.67 7.68 86.53 0.66 19.34 16 21 O -0.54 -20.25 13.55 -4.21 -0.06 -20.30 16 22 C -0.04 -0.94 6.77 24.01 0.16 -0.78 16 23 C -0.09 -1.88 10.81 23.75 0.26 -1.63 16 24 C -0.21 -4.01 6.43 -20.25 -0.13 -4.14 16 25 C 0.17 2.69 11.28 85.01 0.96 3.64 16 26 N -0.51 -8.02 10.34 -195.04 -2.02 -10.04 16 27 C 0.12 1.32 11.13 84.51 0.94 2.26 16 28 C -0.16 -1.87 10.13 22.40 0.23 -1.65 16 29 C 0.08 1.50 7.48 23.21 0.17 1.67 16 30 O -0.17 -3.64 7.18 -9.75 -0.07 -3.71 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.00 -0.04 7.82 -2.39 -0.02 -0.06 16 33 H 0.03 1.64 7.14 -2.39 -0.02 1.62 16 34 H 0.08 3.60 5.99 -2.38 -0.01 3.59 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 37 H 0.06 2.04 7.70 -2.39 -0.02 2.02 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 2.19 4.41 -8.63 -0.04 2.15 16 42 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -74.15 357.49 2.87 -71.28 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.99 Total: 11.04 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.33 Total: 16.54 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -6.36 Total: -122.75 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.13 Total: -24.01 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.15 2.87 -71.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049573628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.093 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds