Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48490 * 109.47232 * 89.99800 * 3 2 1 5 5 H 1.48500 * 109.46987 * 210.00495 * 3 2 1 6 6 H 1.48506 * 109.46823 * 329.99833 * 3 2 1 7 7 C 1.38813 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99811 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.46831 * 125.37533 * 179.97438 * 9 7 2 11 11 C 1.53899 * 107.49806 * 181.00850 * 10 9 7 12 12 H 1.08996 * 109.09592 * 260.22713 * 11 10 9 13 13 C 1.50771 * 110.58809 * 140.15826 * 11 10 9 14 14 C 1.51325 * 113.46883 * 289.13253 * 13 11 10 15 15 C 1.51617 * 112.05410 * 304.71241 * 14 13 11 16 16 N 1.44500 * 112.73341 * 42.33952 * 15 14 13 17 17 C 1.34777 * 116.65330 * 154.48387 * 16 15 14 18 18 O 1.21654 * 120.00248 * 176.01985 * 17 16 15 19 19 C 1.46986 * 119.99892 * 356.02449 * 17 16 15 20 20 C 1.35841 * 125.12019 * 187.53630 * 19 17 16 21 21 C 1.46104 * 106.06950 * 179.97438 * 20 19 17 22 22 C 1.39438 * 135.07540 * 180.02562 * 21 20 19 23 23 N 1.31680 * 120.07823 * 179.97438 * 22 21 20 24 24 C 1.32306 * 122.13534 * 0.02562 * 23 22 21 25 25 C 1.37750 * 121.58846 * 359.97438 * 24 23 22 26 26 C 1.39236 * 118.95620 * 0.02562 * 25 24 23 27 27 O 1.34281 * 134.38054 * 180.35060 * 26 25 24 28 28 C 1.44122 * 126.70167 * 334.46397 * 16 15 14 29 29 H 1.09001 * 109.49442 * 254.12888 * 28 16 15 30 30 C 1.46900 * 125.38031 * 359.69568 * 9 7 2 31 31 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.84875 * 300.49453 * 10 9 7 33 33 H 1.09002 * 109.84149 * 61.52710 * 10 9 7 34 34 H 1.09006 * 108.68363 * 50.15408 * 13 11 10 35 35 H 1.08999 * 108.68537 * 168.09685 * 13 11 10 36 36 H 1.09002 * 108.97072 * 65.37304 * 14 13 11 37 37 H 1.09004 * 108.96431 * 184.14166 * 14 13 11 38 38 H 1.09002 * 108.83181 * 163.17858 * 15 14 13 39 39 H 1.09000 * 108.82915 * 281.50158 * 15 14 13 40 40 H 1.07998 * 126.96968 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.96779 * 359.97191 * 22 21 20 42 42 H 1.08001 * 119.20583 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.52354 * 180.02562 * 25 24 23 44 44 H 1.09007 * 110.08779 * 281.32217 * 30 9 7 45 45 H 1.08996 * 110.09162 * 42.89271 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 1.9373 -3.7228 0.0017 11 6 0.7960 -4.7549 -0.0228 12 1 0.6333 -5.1307 0.9873 13 6 1.1434 -5.9081 -0.9298 14 6 1.1339 -5.5437 -2.3985 15 6 -0.1901 -4.9420 -2.8272 16 7 -0.7126 -3.9989 -1.8651 17 6 -1.5432 -3.0493 -2.3391 18 8 -2.0754 -2.2688 -1.5724 19 6 -1.8064 -2.9566 -3.7822 20 6 -2.5037 -1.9601 -4.3871 21 6 -2.5111 -2.2793 -5.8128 22 6 -3.0403 -1.6810 -6.9557 23 7 -2.8650 -2.2404 -8.1348 24 6 -2.1939 -3.3707 -8.2848 25 6 -1.6381 -4.0280 -7.2093 26 6 -1.7898 -3.4855 -5.9360 27 8 -1.3867 -3.8468 -4.7071 28 6 -0.4371 -3.9694 -0.4508 29 1 -1.3071 -4.3317 0.0969 30 6 -0.1369 -2.5257 0.0086 31 1 -0.4850 0.8401 -0.0004 32 1 2.5638 -3.8429 -0.8821 33 1 2.5365 -3.8551 0.9026 34 1 2.1366 -6.2722 -0.6669 35 1 0.4250 -6.7110 -0.7645 36 1 1.9289 -4.8230 -2.5899 37 1 1.3207 -6.4417 -2.9875 38 1 -0.0526 -4.4322 -3.7807 39 1 -0.9145 -5.7453 -2.9615 40 1 -2.9601 -1.1050 -3.9107 41 1 -3.5948 -0.7578 -6.8739 42 1 -2.0791 -3.7882 -9.2742 43 1 -1.0933 -4.9496 -7.3515 44 1 -0.5235 -2.3627 1.0147 45 1 -0.5835 -1.8128 -0.6845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050085275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 68.134845 kcal Electronic energy + Delta-G solvation = -30805.421415 eV Core-core repulsion = 26791.463619 eV Total energy + Delta-G solvation = -4013.957796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84478 -40.48935 -39.07564 -37.73112 -35.47067 -33.40733 -32.95612 -32.13199 -31.79461 -30.15394 -29.52726 -27.35118 -25.70131 -24.99406 -24.07517 -23.33806 -22.28361 -21.83479 -20.90511 -19.97465 -18.33672 -18.04749 -17.66478 -16.86053 -16.60548 -16.13548 -15.81893 -15.51179 -15.12146 -14.78655 -14.50703 -14.29483 -14.12082 -14.04980 -13.75799 -13.54531 -13.48372 -13.16336 -13.04743 -12.35100 -12.20618 -11.76604 -11.74015 -11.54100 -11.12886 -10.98994 -10.78828 -10.65259 -10.42125 -10.38066 -10.29625 -10.14471 -9.93907 -9.88818 -9.62045 -9.53719 -9.24382 -8.58402 -8.39412 -8.02239 -6.73041 -5.55402 -2.97870 0.36868 1.08140 1.77223 2.28745 3.21463 3.43139 3.45862 3.47934 3.50329 3.58444 4.14262 4.24700 4.38222 4.54278 4.72054 4.80355 4.85722 4.93190 5.01420 5.09195 5.21551 5.26979 5.35767 5.49740 5.53678 5.57260 5.62866 5.68074 5.71984 5.90205 5.97293 5.99084 6.04047 6.10487 6.20485 6.21923 6.23864 6.40556 6.57848 6.69114 6.72410 6.76086 7.03300 7.50305 7.62504 7.71447 7.72530 8.09483 8.37727 8.59952 9.29679 9.91216 10.54346 11.47167 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.004287 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.283775 B = 6530.095882 C = 8120.176819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.099 4.099 12 H 0.080 0.920 13 C -0.102 4.102 14 C -0.125 4.125 15 C 0.106 3.894 16 N -0.570 5.570 17 C 0.576 3.424 18 O -0.470 6.470 19 C -0.008 4.008 20 C -0.107 4.107 21 C -0.192 4.192 22 C 0.171 3.829 23 N -0.496 5.496 24 C 0.110 3.890 25 C -0.160 4.160 26 C 0.088 3.912 27 O -0.169 6.169 28 C 0.127 3.873 29 H 0.064 0.936 30 C 0.134 3.866 31 H 0.252 0.748 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.177 0.823 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.144 0.856 44 H 0.025 0.975 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -12.912 -12.348 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.119 4.119 12 H 0.098 0.902 13 C -0.140 4.140 14 C -0.163 4.163 15 C -0.016 4.016 16 N -0.302 5.302 17 C 0.361 3.639 18 O -0.344 6.344 19 C -0.058 4.058 20 C -0.129 4.129 21 C -0.195 4.195 22 C 0.008 3.992 23 N -0.207 5.207 24 C -0.040 4.040 25 C -0.181 4.181 26 C 0.032 3.968 27 O -0.070 6.070 28 C 0.024 3.976 29 H 0.082 0.918 30 C 0.009 3.991 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.194 0.806 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.162 0.838 44 H 0.043 0.957 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.476 -12.227 -12.559 18.090 hybrid contribution 0.991 0.397 0.814 1.343 sum -3.485 -11.831 -11.744 17.030 Atomic orbital electron populations 1.69903 1.04484 1.24787 1.56246 1.24824 0.95713 0.97514 1.02256 0.86180 0.78547 0.83854 0.77537 1.21629 1.20847 1.21667 1.18981 0.90316 0.82430 1.44342 0.90701 1.44339 1.01784 0.99734 1.86995 1.21298 0.93567 0.85938 0.97795 1.21274 0.95832 0.95455 0.99291 0.90201 1.20536 1.01821 0.97377 0.94276 1.21097 0.97267 1.01023 0.96905 1.21167 0.95834 0.92577 0.92032 1.46513 1.45626 1.29405 1.08691 1.16937 0.81515 0.82057 0.83375 1.90951 1.49016 1.40329 1.54114 1.22606 1.01645 0.91531 0.89973 1.22683 1.00163 0.99850 0.90161 1.20983 1.04901 0.98047 0.95589 1.22450 0.93576 0.97941 0.85270 1.67792 1.16373 1.11107 1.25412 1.22551 0.92549 0.90653 0.98282 1.21005 1.05757 1.03380 0.87946 1.20129 0.95489 0.94415 0.86718 1.84459 1.62814 1.46196 1.13557 1.21390 0.96409 1.01459 0.78374 0.91766 1.22499 0.84476 0.91045 1.01033 0.93671 0.95986 0.96157 0.91430 0.92396 0.91068 0.90782 0.89040 0.92621 0.80606 0.81707 0.81653 0.83823 0.95737 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 10.17 55.49 0.56 -26.76 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.62 10.25 -15.06 -0.15 -6.78 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.72 3.39 -171.21 -0.58 -16.30 16 10 C 0.14 2.92 6.74 -3.39 -0.02 2.90 16 11 C -0.10 -1.68 2.96 -91.61 -0.27 -1.96 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.10 -1.33 5.10 -28.69 -0.15 -1.48 16 14 C -0.13 -1.60 5.84 -28.28 -0.17 -1.76 16 15 C 0.11 1.52 5.23 -5.81 -0.03 1.49 16 16 N -0.57 -10.33 3.09 -171.16 -0.53 -10.86 16 17 C 0.58 11.31 6.95 -12.72 -0.09 11.22 16 18 O -0.47 -10.84 13.85 5.23 0.07 -10.77 16 19 C -0.01 -0.14 6.64 -36.90 -0.24 -0.38 16 20 C -0.11 -1.62 10.81 -37.29 -0.40 -2.03 16 21 C -0.19 -2.59 6.43 -105.22 -0.68 -3.26 16 22 C 0.17 2.00 11.27 -17.17 -0.19 1.81 16 23 N -0.50 -5.80 10.34 -13.00 -0.13 -5.93 16 24 C 0.11 1.05 11.13 -17.53 -0.20 0.86 16 25 C -0.16 -1.62 10.13 -39.39 -0.40 -2.01 16 26 C 0.09 1.15 7.48 -38.13 -0.29 0.87 16 27 O -0.17 -2.45 6.80 3.68 0.03 -2.42 16 28 C 0.13 2.50 3.22 -68.77 -0.22 2.28 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 C 0.13 3.39 4.67 -3.06 -0.01 3.38 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.02 0.46 6.70 -51.93 -0.35 0.11 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.04 7.10 -51.93 -0.37 0.67 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.34 4.68 -53.29 -0.25 1.09 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 41 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.02 0.69 8.14 -51.92 -0.42 0.26 16 45 H 0.14 3.91 2.98 -52.00 -0.15 3.75 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -33.95 353.79 -9.62 -43.57 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.74 Total: 1.71 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.61 Total: 4.86 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.68 Total: -59.85 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.10 Total: -13.19 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.95 -9.62 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050085275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.705 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds