Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48490 * 109.47232 * 89.99800 * 3 2 1 5 5 H 1.48500 * 109.46987 * 210.00495 * 3 2 1 6 6 H 1.48506 * 109.46823 * 329.99833 * 3 2 1 7 7 C 1.38813 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99811 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.46831 * 125.37533 * 179.97438 * 9 7 2 11 11 C 1.53899 * 107.49806 * 181.00850 * 10 9 7 12 12 H 1.08996 * 109.09592 * 260.22713 * 11 10 9 13 13 C 1.50771 * 110.58809 * 140.15826 * 11 10 9 14 14 C 1.51325 * 113.46883 * 289.13253 * 13 11 10 15 15 C 1.51617 * 112.05410 * 304.71241 * 14 13 11 16 16 N 1.44500 * 112.73341 * 42.33952 * 15 14 13 17 17 C 1.34777 * 116.65330 * 154.48387 * 16 15 14 18 18 O 1.21654 * 120.00248 * 176.01985 * 17 16 15 19 19 C 1.46986 * 119.99892 * 356.02449 * 17 16 15 20 20 C 1.35841 * 125.12019 * 187.53630 * 19 17 16 21 21 C 1.46104 * 106.06950 * 179.97438 * 20 19 17 22 22 C 1.39438 * 135.07540 * 180.02562 * 21 20 19 23 23 N 1.31680 * 120.07823 * 179.97438 * 22 21 20 24 24 C 1.32306 * 122.13534 * 0.02562 * 23 22 21 25 25 C 1.37750 * 121.58846 * 359.97438 * 24 23 22 26 26 C 1.39236 * 118.95620 * 0.02562 * 25 24 23 27 27 O 1.34281 * 134.38054 * 180.35060 * 26 25 24 28 28 C 1.44122 * 126.70167 * 334.46397 * 16 15 14 29 29 H 1.09001 * 109.49442 * 254.12888 * 28 16 15 30 30 C 1.46900 * 125.38031 * 359.69568 * 9 7 2 31 31 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.84875 * 300.49453 * 10 9 7 33 33 H 1.09002 * 109.84149 * 61.52710 * 10 9 7 34 34 H 1.09006 * 108.68363 * 50.15408 * 13 11 10 35 35 H 1.08999 * 108.68537 * 168.09685 * 13 11 10 36 36 H 1.09002 * 108.97072 * 65.37304 * 14 13 11 37 37 H 1.09004 * 108.96431 * 184.14166 * 14 13 11 38 38 H 1.09002 * 108.83181 * 163.17858 * 15 14 13 39 39 H 1.09000 * 108.82915 * 281.50158 * 15 14 13 40 40 H 1.07998 * 126.96968 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.96779 * 359.97191 * 22 21 20 42 42 H 1.08001 * 119.20583 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.52354 * 180.02562 * 25 24 23 44 44 H 1.09007 * 110.08779 * 281.32217 * 30 9 7 45 45 H 1.08996 * 110.09162 * 42.89271 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 1.9373 -3.7228 0.0017 11 6 0.7960 -4.7549 -0.0228 12 1 0.6333 -5.1307 0.9873 13 6 1.1434 -5.9081 -0.9298 14 6 1.1339 -5.5437 -2.3985 15 6 -0.1901 -4.9420 -2.8272 16 7 -0.7126 -3.9989 -1.8651 17 6 -1.5432 -3.0493 -2.3391 18 8 -2.0754 -2.2688 -1.5724 19 6 -1.8064 -2.9566 -3.7822 20 6 -2.5037 -1.9601 -4.3871 21 6 -2.5111 -2.2793 -5.8128 22 6 -3.0403 -1.6810 -6.9557 23 7 -2.8650 -2.2404 -8.1348 24 6 -2.1939 -3.3707 -8.2848 25 6 -1.6381 -4.0280 -7.2093 26 6 -1.7898 -3.4855 -5.9360 27 8 -1.3867 -3.8468 -4.7071 28 6 -0.4371 -3.9694 -0.4508 29 1 -1.3071 -4.3317 0.0969 30 6 -0.1369 -2.5257 0.0086 31 1 -0.4850 0.8401 -0.0004 32 1 2.5638 -3.8429 -0.8821 33 1 2.5365 -3.8551 0.9026 34 1 2.1366 -6.2722 -0.6669 35 1 0.4250 -6.7110 -0.7645 36 1 1.9289 -4.8230 -2.5899 37 1 1.3207 -6.4417 -2.9875 38 1 -0.0526 -4.4322 -3.7807 39 1 -0.9145 -5.7453 -2.9615 40 1 -2.9601 -1.1050 -3.9107 41 1 -3.5948 -0.7578 -6.8739 42 1 -2.0791 -3.7882 -9.2742 43 1 -1.0933 -4.9496 -7.3515 44 1 -0.5235 -2.3627 1.0147 45 1 -0.5835 -1.8128 -0.6845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050085275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 45.894866 kcal Electronic energy + Delta-G solvation = -30806.385813 eV Core-core repulsion = 26791.463619 eV Total energy + Delta-G solvation = -4014.922194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.91472 -41.91054 -40.02613 -39.22611 -37.09949 -34.85121 -34.09659 -33.80971 -32.76400 -31.65675 -30.88859 -28.90208 -27.40957 -26.30380 -25.45895 -24.36236 -23.51150 -23.13555 -22.40769 -21.44169 -19.52795 -19.33899 -19.01368 -18.54676 -17.87283 -17.47515 -16.93824 -16.81762 -16.50152 -16.24098 -15.76677 -15.76046 -15.48615 -15.35468 -15.20124 -14.55513 -14.46549 -14.40541 -14.25667 -13.88672 -13.77264 -13.63992 -13.13040 -13.03070 -12.73605 -12.65334 -12.47940 -12.13319 -12.04976 -11.77276 -11.67427 -11.51424 -11.45203 -11.36434 -10.92617 -10.76392 -10.58908 -10.47151 -9.65350 -9.38101 -8.83425 -7.73007 -5.19050 -0.64913 0.14538 0.64804 1.15273 1.41218 1.43917 1.52365 1.86657 2.10140 2.48001 2.69578 3.07495 3.32889 3.34285 3.43621 3.60627 3.66884 3.77936 3.82325 3.85927 3.96935 3.99145 4.03676 4.11801 4.31831 4.49711 4.53013 4.60500 4.65474 4.69925 4.71316 4.79933 4.87041 4.89558 5.00641 5.04445 5.09026 5.15343 5.29628 5.33547 5.40845 5.41447 5.49187 5.68005 5.76586 5.98612 6.22894 6.51376 6.86085 6.98574 7.11703 7.82296 8.43868 9.26304 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.004287 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.283775 B = 6530.095882 C = 8120.176819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.088 4.088 12 H 0.094 0.906 13 C -0.098 4.098 14 C -0.122 4.122 15 C 0.099 3.901 16 N -0.570 5.570 17 C 0.568 3.432 18 O -0.522 6.522 19 C -0.033 4.033 20 C -0.103 4.103 21 C -0.212 4.212 22 C 0.171 3.829 23 N -0.510 5.510 24 C 0.119 3.881 25 C -0.155 4.155 26 C 0.075 3.925 27 O -0.165 6.165 28 C 0.138 3.862 29 H 0.068 0.932 30 C 0.132 3.868 31 H 0.243 0.757 32 H 0.029 0.971 33 H 0.023 0.977 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.172 0.828 41 H 0.185 0.815 42 H 0.208 0.792 43 H 0.179 0.821 44 H -0.022 1.022 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -15.772 -15.262 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.107 4.107 12 H 0.112 0.888 13 C -0.136 4.136 14 C -0.159 4.159 15 C -0.022 4.022 16 N -0.300 5.300 17 C 0.355 3.645 18 O -0.401 6.401 19 C -0.082 4.082 20 C -0.125 4.125 21 C -0.216 4.216 22 C 0.008 3.992 23 N -0.220 5.220 24 C -0.031 4.031 25 C -0.175 4.175 26 C 0.020 3.980 27 O -0.066 6.066 28 C 0.033 3.967 29 H 0.086 0.914 30 C 0.007 3.993 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.189 0.811 41 H 0.201 0.799 42 H 0.224 0.776 43 H 0.196 0.804 44 H -0.004 1.004 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.178 -15.152 -15.500 21.907 hybrid contribution 0.582 1.267 1.572 2.101 sum -2.596 -13.885 -13.928 19.837 Atomic orbital electron populations 1.70209 1.05995 1.24691 1.57516 1.25677 0.96552 1.00918 1.02661 0.85144 0.77642 0.79446 0.77500 1.21218 1.19314 1.22216 1.19382 0.90825 0.83839 1.43521 0.90238 1.44629 1.02391 1.01140 1.86854 1.21537 0.95029 0.84646 0.97904 1.21311 0.92496 0.95502 1.01386 0.88794 1.20565 1.03881 0.95877 0.93279 1.21155 0.95200 1.02089 0.97466 1.21484 0.97493 0.92344 0.90867 1.46623 1.45047 1.29791 1.08572 1.17362 0.81042 0.81600 0.84509 1.90914 1.51144 1.42157 1.55857 1.21975 1.03866 0.93150 0.89180 1.22837 0.98912 0.99177 0.91585 1.21031 1.06523 0.99076 0.94922 1.22782 0.93156 0.98490 0.84770 1.67901 1.16994 1.12158 1.24990 1.23312 0.90384 0.89450 0.99921 1.21462 1.05383 1.04400 0.86226 1.20665 0.95523 0.94649 0.87142 1.84398 1.62984 1.45482 1.13752 1.21057 0.97910 0.98054 0.79645 0.91428 1.22250 0.84168 0.94727 0.98118 0.94731 0.95353 0.95855 0.89189 0.89580 0.93287 0.86434 0.89308 0.89964 0.81087 0.79857 0.77557 0.80353 1.00432 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 10.17 21.65 0.22 -59.67 16 2 C -0.06 -3.87 5.48 84.86 0.47 -3.40 16 3 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 7 C -0.25 -14.53 10.25 84.03 0.86 -13.67 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -33.82 3.39 -695.57 -2.36 -36.18 16 10 C 0.13 5.55 6.74 86.62 0.58 6.14 16 11 C -0.09 -2.86 2.96 -11.43 -0.03 -2.90 16 12 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 13 C -0.10 -2.18 5.10 29.32 0.15 -2.03 16 14 C -0.12 -2.67 5.84 29.59 0.17 -2.50 16 15 C 0.10 2.63 5.23 86.30 0.45 3.08 16 16 N -0.57 -20.87 3.09 -813.67 -2.51 -23.38 16 17 C 0.57 23.54 6.95 86.54 0.60 24.15 16 18 O -0.52 -26.25 13.85 -4.20 -0.06 -26.30 16 19 C -0.03 -1.12 6.64 24.01 0.16 -0.97 16 20 C -0.10 -3.29 10.81 23.76 0.26 -3.04 16 21 C -0.21 -5.64 6.43 -20.25 -0.13 -5.77 16 22 C 0.17 3.78 11.27 85.00 0.96 4.74 16 23 N -0.51 -10.54 10.34 -195.04 -2.02 -12.56 16 24 C 0.12 1.81 11.13 84.51 0.94 2.75 16 25 C -0.15 -2.55 10.13 22.39 0.23 -2.32 16 26 C 0.08 1.85 7.48 23.21 0.17 2.03 16 27 O -0.16 -4.64 6.80 -9.74 -0.07 -4.71 16 28 C 0.14 5.53 3.22 45.71 0.15 5.68 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 C 0.13 7.15 4.67 86.80 0.41 7.55 16 31 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.03 1.15 6.70 -2.39 -0.02 1.13 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.68 8.10 -2.38 -0.02 1.66 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.31 7.10 -2.39 -0.02 1.29 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.47 4.68 -23.88 -0.11 2.36 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.17 5.41 8.06 -2.91 -0.02 5.39 16 41 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 44 H -0.02 -1.35 8.14 -2.38 -0.02 -1.37 16 45 H 0.12 6.97 2.98 -3.43 -0.01 6.96 16 Total: -1.00 -80.89 353.79 2.55 -78.34 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.92 Total: 14.90 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.39 Total: 19.52 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -6.67 Total: -131.79 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.12 Total: -31.01 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -80.89 2.55 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050085275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.232 kcal (2) G-P(sol) polarization free energy of solvation -80.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds