Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47025 * 85.03978 * 3 2 1 5 5 H 1.48499 * 109.47039 * 205.03876 * 3 2 1 6 6 H 1.48501 * 109.47497 * 325.03829 * 3 2 1 7 7 C 1.38805 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00383 * 186.72811 * 7 2 1 9 9 N 1.36940 * 120.00358 * 6.73542 * 7 2 1 10 10 C 1.47164 * 135.99622 * 3.34379 * 9 7 2 11 11 C 1.52638 * 87.95094 * 206.72445 * 10 9 7 12 12 C 1.47168 * 136.00411 * 183.72211 * 9 7 2 13 13 C 1.52791 * 114.15176 * 220.84265 * 11 10 9 14 14 N 1.47367 * 108.05097 * 179.02561 * 13 11 10 15 15 C 1.34776 * 121.06144 * 228.20590 * 14 13 11 16 16 O 1.21779 * 119.99437 * 175.55808 * 15 14 13 17 17 C 1.46205 * 120.00375 * 355.55870 * 15 14 13 18 18 C 1.41736 * 126.80123 * 333.78963 * 17 15 14 19 19 C 1.34516 * 107.77805 * 179.97438 * 18 17 15 20 20 N 1.36952 * 109.60370 * 359.97438 * 19 18 17 21 21 C 1.36704 * 131.34707 * 179.97438 * 20 19 18 22 22 C 1.35000 * 120.75335 * 179.97438 * 21 20 19 23 23 C 1.40306 * 120.38083 * 359.97438 * 22 21 20 24 24 C 1.36343 * 119.45464 * 0.02562 * 23 22 21 25 25 C 1.36940 * 108.73827 * 359.76422 * 20 19 18 26 26 C 1.47111 * 117.87006 * 48.23117 * 14 13 11 27 27 C 1.53222 * 108.74742 * 307.69259 * 26 14 13 28 28 O 1.42387 * 114.12793 * 88.43400 * 11 10 9 29 29 H 0.97001 * 120.00343 * 0.02562 * 1 2 3 30 30 H 1.09007 * 113.49012 * 321.42813 * 10 9 7 31 31 H 1.09002 * 113.48746 * 91.93040 * 10 9 7 32 32 H 1.09001 * 113.49284 * 268.07150 * 12 9 7 33 33 H 1.09003 * 113.49344 * 38.51469 * 12 9 7 34 34 H 1.09000 * 109.74456 * 298.66464 * 13 11 10 35 35 H 1.08994 * 109.74216 * 59.33579 * 13 11 10 36 36 H 1.08008 * 126.10501 * 359.97438 * 18 17 15 37 37 H 1.07998 * 125.19681 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.62515 * 359.97335 * 21 20 19 39 39 H 1.08004 * 119.81181 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.27242 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.33586 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.59342 * 67.46818 * 26 14 13 43 43 H 1.08999 * 109.59294 * 187.90742 * 26 14 13 44 44 H 1.09002 * 109.49443 * 174.18391 * 27 26 14 45 45 H 1.08998 * 109.49167 * 294.22900 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3927 2.1069 1.3948 5 1 3.5962 1.4122 -0.5926 6 1 1.5039 2.6202 -0.8023 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1101 9 7 1.3327 -2.3840 -0.1380 10 6 -0.0658 -2.7822 -0.3644 11 6 0.2522 -4.0983 0.3403 12 6 1.6825 -3.8134 -0.1192 13 6 -0.3776 -5.3264 -0.3150 14 7 0.0323 -6.5150 0.4538 15 6 0.5152 -7.6107 -0.1648 16 8 0.9236 -8.5508 0.4929 17 6 0.5487 -7.6708 -1.6252 18 6 -0.2988 -6.9750 -2.5233 19 6 0.0656 -7.3091 -3.7743 20 7 1.1127 -8.1907 -3.7279 21 6 1.8185 -8.8077 -4.7228 22 6 2.8296 -9.6528 -4.4299 23 6 3.1737 -9.9119 -3.0945 24 6 2.4776 -9.3030 -2.0926 25 6 1.4326 -8.4252 -2.4172 26 6 -0.1029 -6.4673 1.9179 27 6 0.5940 -5.2048 2.4359 28 8 0.0722 -4.0608 1.7522 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7858 -2.1656 0.1739 31 1 -0.3179 -2.9033 -1.4180 32 1 1.9108 -4.2179 -1.1053 33 1 2.4376 -4.0662 0.6252 34 1 -1.4637 -5.2352 -0.3007 35 1 -0.0291 -5.4142 -1.3440 36 1 -1.0949 -6.2976 -2.2516 37 1 -0.3963 -6.9382 -4.6772 38 1 1.5643 -8.6169 -5.7550 39 1 3.3775 -10.1318 -5.2280 40 1 3.9832 -10.5880 -2.8622 41 1 2.7301 -9.4924 -1.0598 42 1 -1.1589 -6.4382 2.1867 43 1 0.3640 -7.3489 2.3570 44 1 0.4134 -5.1028 3.5060 45 1 1.6659 -5.2804 2.2536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053335899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 91.043425 kcal Electronic energy + Delta-G solvation = -30210.315358 eV Core-core repulsion = 26197.350952 eV Total energy + Delta-G solvation = -4012.964405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47379 -40.23287 -38.55815 -36.81032 -36.08590 -34.41902 -33.18206 -32.21360 -30.58680 -29.79632 -28.53630 -27.48174 -26.02255 -24.90786 -24.13417 -23.62649 -22.56977 -21.73920 -21.33349 -19.31434 -18.79463 -17.79926 -16.92630 -16.58795 -16.42055 -16.11256 -15.79368 -15.63590 -15.21492 -15.07725 -14.69239 -14.49056 -14.47502 -14.14638 -13.77069 -13.40972 -13.25042 -13.10839 -12.93322 -12.44757 -12.23842 -12.06786 -11.86673 -11.81967 -11.50070 -11.33801 -11.04774 -10.84581 -10.78224 -10.62906 -10.51147 -10.11008 -9.97079 -9.61035 -9.55454 -9.06850 -8.82113 -8.80169 -8.20620 -7.51046 -6.84275 -5.72691 -3.05525 0.54391 1.04427 2.26066 2.42991 3.07629 3.17413 3.41718 3.46491 3.48620 3.63053 4.18471 4.24044 4.46957 4.56323 4.57382 4.67361 4.83556 4.98657 5.01751 5.09307 5.18219 5.26637 5.32568 5.43477 5.48627 5.52145 5.54872 5.62701 5.66913 5.76440 5.83745 5.93221 5.99164 6.06834 6.09364 6.12356 6.36977 6.47436 6.50564 6.54385 6.63628 6.70155 6.94193 7.02433 7.21396 7.53849 7.59249 7.90220 8.03392 8.39818 9.05604 9.73264 10.64497 11.43738 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.003337 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.768407 B = 8389.198932 C = 9505.918956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.167 3.833 11 C 0.049 3.951 12 C 0.101 3.899 13 C 0.084 3.916 14 N -0.605 5.605 15 C 0.597 3.403 16 O -0.560 6.560 17 C -0.234 4.234 18 C -0.110 4.110 19 C -0.061 4.061 20 N -0.339 5.339 21 C 0.049 3.951 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.080 4.080 25 C 0.109 3.891 26 C 0.081 3.919 27 C 0.046 3.954 28 O -0.332 6.332 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -20.165 -8.448 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.040 3.960 11 C 0.006 3.994 12 C -0.025 4.025 13 C -0.040 4.040 14 N -0.337 5.337 15 C 0.389 3.611 16 O -0.440 6.440 17 C -0.243 4.243 18 C -0.131 4.131 19 C -0.186 4.186 20 N -0.002 5.002 21 C -0.072 4.072 22 C -0.165 4.165 23 C -0.140 4.140 24 C -0.099 4.099 25 C 0.000 4.000 26 C -0.042 4.042 27 C -0.032 4.032 28 O -0.250 6.250 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.181 0.819 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.357 -20.124 -8.226 21.743 hybrid contribution 0.575 0.789 -0.309 1.025 sum 0.933 -19.334 -8.535 21.155 Atomic orbital electron populations 1.69824 1.04981 1.25257 1.56173 1.24751 0.95641 0.97412 1.02471 0.86112 0.78629 0.83531 0.77554 1.21562 1.20692 1.21600 1.18869 0.90525 0.81495 1.43349 0.90236 1.45257 1.04499 0.99205 1.83442 1.22028 0.90758 0.87740 0.95453 1.23269 0.97872 0.95672 0.82545 1.22866 0.94788 0.87285 0.97594 1.22810 0.99936 0.83834 0.97372 1.47926 1.64066 1.14680 1.07047 1.17016 0.76483 0.81570 0.86053 1.90748 1.49261 1.36994 1.67013 1.19247 1.04083 1.08353 0.92626 1.21340 1.00692 0.99920 0.91149 1.21752 0.95247 1.01344 1.00283 1.41525 1.22960 1.29635 1.06128 1.21692 0.95117 0.97192 0.93181 1.20766 0.97933 0.99813 0.97976 1.21100 1.00367 1.00560 0.92014 1.20794 0.93081 0.94508 1.01475 1.18566 0.98559 1.00295 0.82560 1.22250 1.01543 1.00215 0.80175 1.22887 0.97672 0.85443 0.97182 1.88039 1.79570 1.40206 1.17184 0.93675 0.89245 0.94263 0.94371 0.94209 0.90711 0.87203 0.82030 0.80777 0.81915 0.83551 0.84534 0.83131 0.90872 0.88455 0.88151 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 11.44 55.49 0.64 -26.62 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.18 10.73 -15.06 -0.16 -6.34 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 N -0.60 -15.76 3.78 -185.00 -0.70 -16.46 16 10 C 0.17 3.89 6.97 -8.37 -0.06 3.83 16 11 C 0.05 0.95 1.28 -90.96 -0.12 0.84 16 12 C 0.10 2.20 7.91 -8.23 -0.07 2.14 16 13 C 0.08 1.30 4.44 -3.68 -0.02 1.28 16 14 N -0.60 -9.44 3.03 -174.19 -0.53 -9.97 16 15 C 0.60 9.83 7.62 -13.06 -0.10 9.74 16 16 O -0.56 -10.33 15.66 5.12 0.08 -10.25 16 17 C -0.23 -3.43 5.70 -104.46 -0.60 -4.02 16 18 C -0.11 -1.33 8.39 -39.56 -0.33 -1.66 16 19 C -0.06 -0.64 11.53 -16.58 -0.19 -0.83 16 20 N -0.34 -3.77 2.92 -60.81 -0.18 -3.95 16 21 C 0.05 0.40 10.89 -16.53 -0.18 0.22 16 22 C -0.14 -1.06 9.98 -39.95 -0.40 -1.46 16 23 C -0.12 -1.06 10.09 -39.49 -0.40 -1.45 16 24 C -0.08 -0.96 9.81 -39.50 -0.39 -1.35 16 25 C 0.11 1.48 6.69 -83.92 -0.56 0.92 16 26 C 0.08 1.17 6.60 -3.59 -0.02 1.15 16 27 C 0.05 0.73 6.90 37.27 0.26 0.99 16 28 O -0.33 -6.80 10.53 -35.23 -0.37 -7.17 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.09 2.38 6.90 -51.92 -0.36 2.02 16 31 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.04 0.80 7.93 -51.93 -0.41 0.38 16 33 H 0.04 0.88 7.37 -51.93 -0.38 0.50 16 34 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.11 1.60 4.07 -51.93 -0.21 1.39 16 36 H 0.16 1.71 6.16 -52.48 -0.32 1.38 16 37 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.15 1.88 7.47 -52.49 -0.39 1.49 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.38 7.05 -51.93 -0.37 1.01 16 44 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -36.13 364.40 -9.77 -45.89 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.75 Total: 1.98 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -3.42 Total: 3.72 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.77 Total: -57.00 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.29 Total: -17.42 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.13 -9.77 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053335899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.936 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds