Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47222 * 274.98830 * 3 2 1 5 5 H 1.48505 * 109.47012 * 34.98673 * 3 2 1 6 6 H 1.48498 * 109.47213 * 154.98231 * 3 2 1 7 7 C 1.38811 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99380 * 185.08435 * 7 2 1 9 9 N 1.36936 * 120.00441 * 5.09208 * 7 2 1 10 10 C 1.47772 * 134.41124 * 173.50274 * 9 7 2 11 11 C 1.52938 * 85.80689 * 156.05630 * 10 9 7 12 12 C 1.47774 * 134.40236 * 353.47406 * 9 7 2 13 13 C 1.54549 * 115.12191 * 266.53471 * 11 10 9 14 14 C 1.55472 * 100.54022 * 194.49852 * 13 11 10 15 15 H 1.09004 * 110.82771 * 274.79279 * 14 13 11 16 16 N 1.46503 * 110.82774 * 151.43028 * 14 13 11 17 17 C 1.34773 * 120.00116 * 157.71442 * 16 14 13 18 18 O 1.21776 * 119.99994 * 0.02562 * 17 16 14 19 19 C 1.46207 * 120.00123 * 180.02562 * 17 16 14 20 20 C 1.41740 * 126.79874 * 359.67853 * 19 17 16 21 21 C 1.34518 * 107.77664 * 179.88979 * 20 19 17 22 22 N 1.36952 * 109.60286 * 0.38767 * 21 20 19 23 23 C 1.36704 * 131.34610 * 179.77478 * 22 21 20 24 24 C 1.35005 * 120.75365 * 179.97438 * 23 22 21 25 25 C 1.40307 * 120.38172 * 0.02562 * 24 23 22 26 26 C 1.36340 * 119.45323 * 359.97438 * 25 24 23 27 27 C 1.36934 * 108.74325 * 359.75391 * 22 21 20 28 28 C 1.54465 * 102.55248 * 33.11156 * 14 13 11 29 29 O 1.42540 * 116.18954 * 141.02928 * 11 10 9 30 30 H 0.96992 * 120.00334 * 0.02562 * 1 2 3 31 31 H 1.08995 * 113.81761 * 41.83374 * 10 9 7 32 32 H 1.08997 * 113.92854 * 270.28829 * 10 9 7 33 33 H 1.08996 * 113.81916 * 89.71992 * 12 9 7 34 34 H 1.09000 * 113.81760 * 318.15413 * 12 9 7 35 35 H 1.08998 * 111.35420 * 76.66485 * 13 11 10 36 36 H 1.09001 * 111.18237 * 312.26109 * 13 11 10 37 37 H 0.97001 * 119.99916 * 337.71923 * 16 14 13 38 38 H 1.08001 * 126.10856 * 0.02562 * 20 19 17 39 39 H 1.08000 * 125.19724 * 180.14332 * 21 20 19 40 40 H 1.08001 * 119.62761 * 359.97438 * 23 22 21 41 41 H 1.08002 * 119.81334 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.27573 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.33766 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.83397 * 98.04221 * 28 14 13 45 45 H 1.08994 * 109.83686 * 218.92993 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0834 9 7 1.3297 -2.3858 -0.1042 10 6 1.7315 -3.7998 -0.2555 11 6 0.3732 -4.1350 0.3623 12 6 -0.1000 -2.7594 -0.1105 13 6 0.3807 -4.3348 1.8948 14 6 -1.0031 -5.0131 2.1000 15 1 -1.7917 -4.2659 2.1884 16 7 -0.9848 -5.8892 3.2740 17 6 -2.1382 -6.2121 3.8919 18 8 -3.1956 -5.7760 3.4741 19 6 -2.1199 -7.0860 5.0640 20 6 -0.9801 -7.6763 5.6652 21 6 -1.4001 -8.4024 6.7168 22 7 -2.7631 -8.3165 6.8194 23 6 -3.6386 -8.8742 7.7090 24 6 -4.9649 -8.6420 7.6100 25 6 -5.4675 -7.8220 6.5884 26 6 -4.6050 -7.2597 5.6947 27 6 -3.2302 -7.5125 5.8143 28 6 -1.1691 -5.8360 0.8033 29 8 -0.3090 -5.2582 -0.1898 30 1 -0.4850 0.8399 -0.0004 31 1 2.5802 -4.0851 0.3661 32 1 1.8352 -4.1215 -1.2917 33 1 -0.5489 -2.7657 -1.1037 34 1 -0.6985 -2.2228 0.6257 35 1 0.4328 -3.3807 2.4192 36 1 1.1919 -4.9950 2.2019 37 1 -0.1425 -6.2369 3.6067 38 1 0.0430 -7.5615 5.3388 39 1 -0.7606 -8.9699 7.3766 40 1 -3.2652 -9.5077 8.4999 41 1 -5.6430 -9.0900 8.3213 42 1 -6.5287 -7.6371 6.5111 43 1 -4.9763 -6.6259 4.9029 44 1 -0.8822 -6.8720 0.9834 45 1 -2.2052 -5.7924 0.4677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053867293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = 39.950128 kcal Electronic energy + Delta-G solvation = -28781.113613 eV Core-core repulsion = 24765.933636 eV Total energy + Delta-G solvation = -4015.179977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.22918 -41.57138 -40.11558 -37.88285 -37.49714 -35.65040 -34.14732 -33.97569 -31.79930 -30.78431 -29.92800 -28.79489 -27.48600 -26.73382 -24.84214 -24.46941 -23.88797 -22.46402 -22.25982 -21.23313 -20.33092 -18.99228 -18.75242 -17.82112 -17.58093 -17.04131 -17.02164 -16.57674 -16.55345 -16.42510 -16.34675 -15.61577 -15.57724 -15.44707 -15.26389 -14.64370 -14.39811 -14.22878 -14.01525 -13.70297 -13.62464 -13.37530 -12.89944 -12.87162 -12.77523 -12.67486 -12.60081 -12.52876 -12.36875 -12.26296 -11.97393 -11.80014 -11.46384 -11.37296 -11.00253 -10.87210 -10.35531 -10.14615 -9.64242 -8.97451 -8.35809 -7.93157 -5.27747 -0.24298 0.25360 1.33205 1.45554 1.48442 1.57312 1.64549 2.22046 2.33939 2.44016 2.69698 2.85899 3.20110 3.33950 3.53558 3.60840 3.70505 3.76498 3.84973 3.95874 3.99116 4.03293 4.06064 4.12316 4.27112 4.47279 4.64786 4.68957 4.75523 4.78383 4.82310 4.85251 4.89673 4.92960 4.96161 5.04525 5.14418 5.19715 5.23589 5.31534 5.37009 5.45270 5.49371 5.68404 5.85173 5.86081 6.15539 6.30961 6.64107 6.87241 7.32276 7.57299 8.51794 9.24841 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002200 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.413626 B =12724.211170 C =13023.176217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.231 4.231 8 H 0.094 0.906 9 N -0.629 5.629 10 C 0.132 3.868 11 C 0.076 3.924 12 C 0.153 3.847 13 C -0.107 4.107 14 C 0.126 3.874 15 H 0.074 0.926 16 N -0.699 5.699 17 C 0.587 3.413 18 O -0.597 6.597 19 C -0.284 4.284 20 C -0.108 4.108 21 C -0.059 4.059 22 N -0.342 5.342 23 C 0.051 3.949 24 C -0.147 4.147 25 C -0.097 4.097 26 C -0.131 4.131 27 C 0.095 3.905 28 C 0.047 3.953 29 O -0.378 6.378 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.009 0.991 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.417 0.583 38 H 0.179 0.821 39 H 0.215 0.785 40 H 0.208 0.792 41 H 0.188 0.812 42 H 0.159 0.841 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -24.916 21.005 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.359 4.359 8 H 0.111 0.889 9 N -0.358 5.358 10 C 0.007 3.993 11 C 0.035 3.965 12 C 0.027 3.973 13 C -0.145 4.145 14 C 0.020 3.980 15 H 0.093 0.907 16 N -0.352 5.352 17 C 0.379 3.621 18 O -0.480 6.480 19 C -0.294 4.294 20 C -0.129 4.129 21 C -0.182 4.182 22 N -0.006 5.006 23 C -0.070 4.070 24 C -0.167 4.167 25 C -0.118 4.118 26 C -0.150 4.150 27 C -0.016 4.016 28 C -0.031 4.031 29 O -0.295 6.295 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.255 0.745 38 H 0.196 0.804 39 H 0.231 0.769 40 H 0.225 0.775 41 H 0.205 0.795 42 H 0.176 0.824 43 H 0.146 0.854 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.690 -24.529 20.731 32.617 hybrid contribution 0.150 1.538 -0.565 1.645 sum -5.540 -22.992 20.166 31.080 Atomic orbital electron populations 1.70054 1.06768 1.25758 1.57733 1.25756 0.96535 1.01238 1.02715 0.85011 0.78061 0.78807 0.77175 1.21667 1.22279 1.18437 1.19429 0.91439 0.82665 1.42383 0.88881 1.46009 1.02877 1.01947 1.84919 1.22681 0.94688 0.83334 0.98608 1.23858 0.93894 0.85385 0.93366 1.22374 0.87699 0.90455 0.96739 1.22935 0.96398 1.01901 0.93261 1.22204 0.98388 0.91897 0.85493 0.90734 1.45413 1.09701 1.50340 1.29704 1.17497 0.83151 0.79258 0.82201 1.90761 1.32119 1.56956 1.68179 1.19265 0.94209 1.12865 1.03042 1.21395 0.98758 0.97322 0.95453 1.22345 0.80369 1.10420 1.05101 1.41837 1.08184 1.30918 1.19611 1.22583 0.90024 0.99511 0.94847 1.21313 0.94518 1.00392 1.00433 1.21563 1.01387 0.95396 0.93468 1.20847 0.90226 1.02166 1.01733 1.18808 0.94017 0.96922 0.91812 1.23571 0.94383 0.97773 0.87401 1.88281 1.59068 1.44658 1.37517 0.94264 0.90239 0.93684 0.97341 0.94034 0.90464 0.86578 0.74535 0.80420 0.76881 0.77482 0.79467 0.82377 0.85405 0.89018 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 11.52 21.65 0.25 -59.69 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.98 46.51 29.56 68.60 2.03 48.53 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.23 -13.12 10.69 84.03 0.90 -12.23 16 8 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 9 N -0.63 -33.40 3.69 -739.63 -2.73 -36.12 16 10 C 0.13 5.52 8.50 86.11 0.73 6.25 16 11 C 0.08 3.07 1.48 -10.25 -0.02 3.05 16 12 C 0.15 8.00 6.91 86.12 0.59 8.60 16 13 C -0.11 -3.54 6.07 31.97 0.19 -3.35 16 14 C 0.13 4.10 3.32 46.34 0.15 4.25 16 15 H 0.07 2.93 7.63 -2.38 -0.02 2.91 16 16 N -0.70 -18.41 5.12 -440.51 -2.25 -20.66 16 17 C 0.59 18.26 7.77 86.31 0.67 18.93 16 18 O -0.60 -23.56 15.34 -4.59 -0.07 -23.63 16 19 C -0.28 -7.19 6.20 -19.76 -0.12 -7.32 16 20 C -0.11 -1.78 10.27 22.28 0.23 -1.55 16 21 C -0.06 -0.73 11.53 83.04 0.96 0.22 16 22 N -0.34 -5.39 2.92 -346.29 -1.01 -6.40 16 23 C 0.05 0.43 10.89 83.19 0.91 1.34 16 24 C -0.15 -1.18 9.98 22.03 0.22 -0.96 16 25 C -0.10 -1.37 10.09 22.33 0.23 -1.14 16 26 C -0.13 -3.01 9.72 22.33 0.22 -2.80 16 27 C 0.10 2.28 6.70 39.43 0.26 2.54 16 28 C 0.05 1.52 7.57 72.48 0.55 2.06 16 29 O -0.38 -14.48 11.17 -148.98 -1.66 -16.14 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.04 2.38 7.36 -2.39 -0.02 2.37 16 35 H 0.08 2.95 8.06 -2.39 -0.02 2.93 16 36 H 0.12 2.94 7.98 -2.39 -0.02 2.92 16 37 H 0.42 7.84 7.50 -92.71 -0.69 7.14 16 38 H 0.18 1.77 7.53 -2.91 -0.02 1.75 16 39 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.21 -0.17 8.06 -2.91 -0.02 -0.19 16 41 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.13 3.55 7.07 -2.91 -0.02 3.53 16 44 H 0.09 2.52 8.02 -2.38 -0.02 2.50 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -84.29 375.86 2.01 -82.28 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.33 Total: 17.52 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.14 Total: 14.32 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.74 Total: -122.88 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.73 Total: -39.77 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -84.29 2.01 -82.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053867293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.231 kcal (2) G-P(sol) polarization free energy of solvation -84.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds