Wall clock time and date at job start Sat Apr 11 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00185 * 2 1 4 4 H 1.48500 * 109.46862 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.46777 * 29.99866 * 3 2 1 6 6 H 1.48491 * 109.47169 * 150.00020 * 3 2 1 7 7 C 1.38810 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 337.31780 * 7 2 1 9 9 N 1.36937 * 119.99916 * 157.31820 * 7 2 1 10 10 C 1.47222 * 135.96676 * 350.23806 * 9 7 2 11 11 C 1.52953 * 87.66941 * 153.64570 * 10 9 7 12 12 C 1.47222 * 135.96722 * 170.61092 * 9 7 2 13 13 C 1.53327 * 115.75755 * 270.15743 * 11 10 9 14 14 C 1.55020 * 103.78547 * 229.61355 * 13 11 10 15 15 H 1.09007 * 110.87222 * 139.02570 * 14 13 11 16 16 N 1.46505 * 110.87241 * 262.49716 * 14 13 11 17 17 C 1.34775 * 119.99866 * 205.00205 * 16 14 13 18 18 O 1.21599 * 120.00249 * 359.97438 * 17 16 14 19 19 C 1.47502 * 119.99713 * 179.97438 * 17 16 14 20 20 C 1.41196 * 126.37391 * 359.68704 * 19 17 16 21 21 C 1.37992 * 106.86879 * 179.90067 * 20 19 17 22 22 C 1.41385 * 131.99020 * 180.02562 * 21 20 19 23 23 C 1.35737 * 119.33675 * 180.32225 * 22 21 20 24 24 C 1.40827 * 119.71684 * 359.97438 * 23 22 21 25 25 C 1.34539 * 120.58479 * 0.02562 * 24 23 22 26 26 N 1.37437 * 120.74423 * 0.02562 * 25 24 23 27 27 C 1.35123 * 131.28754 * 179.97438 * 26 25 24 28 28 C 1.55056 * 102.13356 * 20.86638 * 14 13 11 29 29 O 1.42829 * 115.80378 * 141.76206 * 11 10 9 30 30 H 0.96997 * 120.00266 * 183.60078 * 1 2 3 31 31 H 1.09003 * 113.50436 * 268.31876 * 10 9 7 32 32 H 1.09001 * 113.50110 * 38.86273 * 10 9 7 33 33 H 1.08998 * 113.50155 * 321.14016 * 12 9 7 34 34 H 1.09003 * 113.50202 * 91.62541 * 12 9 7 35 35 H 1.09001 * 110.56489 * 348.19465 * 13 11 10 36 36 H 1.09003 * 110.55841 * 111.03890 * 13 11 10 37 37 H 0.96994 * 119.99732 * 24.99589 * 16 14 13 38 38 H 1.08001 * 126.56307 * 0.03327 * 20 19 17 39 39 H 1.08001 * 120.32801 * 0.28267 * 22 21 20 40 40 H 1.07997 * 120.13937 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.70393 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.62608 * 179.97438 * 25 24 23 43 43 H 1.08006 * 125.60993 * 359.95605 * 27 26 25 44 44 H 1.09002 * 110.58661 * 82.02225 * 28 14 13 45 45 H 1.08998 * 110.58429 * 204.78805 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.5329 -2.1011 0.3616 9 7 3.3001 -1.2482 -0.4567 10 6 4.2055 -0.3285 -1.1652 11 6 5.3715 -1.0766 -0.5170 12 6 4.3867 -2.2416 -0.4611 13 6 5.8364 -0.5376 0.8411 14 6 7.3727 -0.4068 0.6804 15 1 7.7342 0.5136 1.1390 16 7 8.0577 -1.5724 1.2448 17 6 9.3325 -1.4648 1.6688 18 8 9.9143 -0.4006 1.5823 19 6 10.0220 -2.6382 2.2376 20 6 9.4765 -3.9295 2.4064 21 6 10.4649 -4.7114 2.9684 22 6 10.4901 -6.0712 3.3548 23 6 11.6212 -6.5869 3.8999 24 6 12.7509 -5.7639 4.0725 25 6 12.7189 -4.4709 3.7023 26 7 11.5847 -3.9263 3.1492 27 6 11.3191 -2.6768 2.7087 28 6 7.5361 -0.3572 -0.8608 29 8 6.5219 -1.2690 -1.3414 30 1 -0.4850 -0.8383 0.0528 31 1 4.1707 -0.4336 -2.2495 32 1 4.1159 0.7074 -0.8380 33 1 4.4501 -2.8205 0.4603 34 1 4.4006 -2.8668 -1.3539 35 1 5.3880 0.4356 1.0406 36 1 5.5932 -1.2425 1.6362 37 1 7.5937 -2.4213 1.3136 38 1 8.4776 -4.2454 2.1438 39 1 9.6178 -6.6932 3.2180 40 1 11.6546 -7.6238 4.2000 41 1 13.6506 -6.1743 4.5067 42 1 13.5940 -3.8537 3.8422 43 1 12.0080 -1.8451 2.7234 44 1 7.3529 0.6507 -1.2334 45 1 8.5298 -0.6976 -1.1520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053946038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:41 Heat of formation + Delta-G solvation = 72.074399 kcal Electronic energy + Delta-G solvation = -28880.815394 eV Core-core repulsion = 24867.028430 eV Total energy + Delta-G solvation = -4013.786964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55413 -40.47173 -39.14743 -36.86777 -36.50321 -34.39715 -33.45136 -32.35456 -31.03163 -29.86277 -28.37941 -28.10573 -25.75645 -25.44070 -24.68493 -23.12721 -22.13972 -21.54561 -21.15635 -20.08001 -19.06695 -18.11917 -17.49141 -17.29539 -16.81388 -16.36300 -15.87654 -15.78455 -15.55458 -15.11816 -14.98631 -14.75011 -14.71949 -14.42774 -14.06151 -13.62108 -13.41736 -13.22169 -12.83154 -12.76313 -12.35480 -12.28181 -12.02187 -11.71324 -11.60345 -11.47102 -11.35747 -11.20207 -10.90837 -10.84667 -10.64596 -10.57856 -10.04899 -9.79413 -9.35117 -9.16922 -8.91849 -8.70005 -8.61798 -7.76909 -7.20512 -6.38576 -3.23694 0.35583 0.97795 1.83307 2.23986 3.09468 3.17513 3.38452 3.40307 3.44967 3.62629 4.07603 4.10646 4.34736 4.39643 4.51122 4.57010 4.60932 4.69052 4.83261 4.89230 4.92696 4.94816 5.08278 5.09989 5.16048 5.39486 5.40872 5.48476 5.49543 5.69878 5.73841 5.81418 5.88124 5.91399 6.00619 6.15222 6.18857 6.30271 6.32703 6.32922 6.36731 6.44742 6.47915 6.59370 6.85608 7.09669 7.34000 7.50293 8.18594 8.22609 8.93544 9.48852 10.36247 11.12784 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002376 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.248126 B =11779.452878 C =12453.614827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.018 4.018 3 Si 1.063 2.937 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.311 4.311 8 H 0.080 0.920 9 N -0.616 5.616 10 C 0.093 3.907 11 C 0.056 3.944 12 C 0.133 3.867 13 C -0.124 4.124 14 C 0.110 3.890 15 H 0.108 0.892 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.548 6.548 19 C -0.169 4.169 20 C -0.160 4.160 21 C 0.027 3.973 22 C -0.074 4.074 23 C -0.136 4.136 24 C -0.135 4.135 25 C 0.041 3.959 26 N -0.342 5.342 27 C 0.020 3.980 28 C 0.038 3.962 29 O -0.358 6.358 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.404 0.596 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.182 0.818 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.764 -10.864 8.044 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.895 3.105 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.437 4.437 8 H 0.098 0.902 9 N -0.346 5.346 10 C -0.033 4.033 11 C 0.015 3.985 12 C 0.006 3.994 13 C -0.162 4.162 14 C 0.004 3.996 15 H 0.126 0.874 16 N -0.357 5.357 17 C 0.377 3.623 18 O -0.427 6.427 19 C -0.177 4.177 20 C -0.184 4.184 21 C -0.077 4.077 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.077 4.077 26 N -0.006 5.006 27 C -0.114 4.114 28 C -0.040 4.040 29 O -0.276 6.276 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.240 0.760 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.199 0.801 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.959 -8.616 7.953 30.318 hybrid contribution -0.048 -2.022 0.117 2.026 sum 27.911 -10.639 8.070 30.941 Atomic orbital electron populations 1.70925 1.05644 1.29694 1.49803 1.25740 0.96219 1.00897 0.99013 0.83799 0.74199 0.75920 0.76560 1.22006 1.22290 1.21162 1.19911 0.85044 0.96688 1.42026 0.90243 1.45576 1.10930 1.13214 1.64871 1.23100 0.87927 0.95532 0.96715 1.23688 0.85281 0.99625 0.89887 1.22414 0.85282 0.92325 0.99355 1.22797 0.92084 1.04121 0.97168 1.22599 0.92465 0.89961 0.94539 0.87396 1.45722 1.13126 1.14022 1.62782 1.17393 0.81182 0.86844 0.76888 1.90768 1.65993 1.28966 1.56993 1.19517 0.94794 0.94543 1.08797 1.21243 0.99179 0.91937 1.06081 1.18806 0.87812 0.92460 1.08620 1.20710 0.99389 0.91666 0.97465 1.20957 0.92875 1.00557 1.01237 1.20749 1.00227 0.92362 1.02144 1.21684 0.89593 0.96070 1.00402 1.41329 1.10350 1.09405 1.39486 1.21997 0.97922 0.86264 1.05221 1.23952 0.92963 0.94754 0.92324 1.88776 1.23231 1.59875 1.55696 0.92657 0.93255 0.93366 0.93315 0.93469 0.88408 0.89273 0.76036 0.82860 0.83785 0.84798 0.83670 0.82066 0.80126 0.91150 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.73 13.70 55.49 0.76 -27.97 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 3 Si 1.06 26.42 25.33 -169.99 -4.31 22.11 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.39 5.50 56.52 0.31 -6.08 16 7 C -0.31 -8.86 10.96 -15.06 -0.17 -9.02 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 9 N -0.62 -15.10 3.53 -184.60 -0.65 -15.76 16 10 C 0.09 2.02 6.69 -7.88 -0.05 1.97 16 11 C 0.06 1.01 1.66 -90.66 -0.15 0.86 16 12 C 0.13 2.64 8.20 -8.04 -0.07 2.58 16 13 C -0.12 -1.95 6.11 -25.49 -0.16 -2.10 16 14 C 0.11 1.50 3.51 -65.77 -0.23 1.27 16 15 H 0.11 1.48 7.54 -51.92 -0.39 1.09 16 16 N -0.71 -8.81 5.15 -52.77 -0.27 -9.08 16 17 C 0.59 7.92 7.82 -12.49 -0.10 7.82 16 18 O -0.55 -8.88 16.54 5.28 0.09 -8.79 16 19 C -0.17 -1.96 6.12 -105.07 -0.64 -2.60 16 20 C -0.16 -1.62 10.44 -38.55 -0.40 -2.02 16 21 C 0.03 0.26 6.70 -84.00 -0.56 -0.31 16 22 C -0.07 -0.54 10.11 -39.28 -0.40 -0.93 16 23 C -0.14 -0.79 10.07 -39.50 -0.40 -1.19 16 24 C -0.13 -0.70 9.97 -39.91 -0.40 -1.10 16 25 C 0.04 0.26 10.89 -16.35 -0.18 0.08 16 26 N -0.34 -3.12 2.92 -60.42 -0.18 -3.30 16 27 C 0.02 0.20 11.37 -16.17 -0.18 0.02 16 28 C 0.04 0.54 7.43 38.24 0.28 0.82 16 29 O -0.36 -6.02 11.32 -35.23 -0.40 -6.42 16 30 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.06 3.53 -51.93 -0.18 0.88 16 33 H 0.05 0.90 7.91 -51.93 -0.41 0.48 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.65 6.78 -51.93 -0.35 1.30 16 36 H 0.09 1.35 7.69 -51.93 -0.40 0.95 16 37 H 0.40 4.46 7.60 -40.82 -0.31 4.15 16 38 H 0.15 1.27 7.53 -52.49 -0.40 0.87 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.15 0.34 8.06 -52.48 -0.42 -0.09 16 42 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -35.29 369.97 -9.19 -44.48 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.91 Total: 3.66 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.89 Total: -4.51 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.34 Total: -56.11 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.31 Total: -15.21 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -4.31 Total: 22.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.29 -9.19 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053946038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.553 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds