Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00185 * 2 1 4 4 H 1.48500 * 109.46862 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.46777 * 29.99866 * 3 2 1 6 6 H 1.48491 * 109.47169 * 150.00020 * 3 2 1 7 7 C 1.38810 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 337.31780 * 7 2 1 9 9 N 1.36937 * 119.99916 * 157.31820 * 7 2 1 10 10 C 1.47222 * 135.96676 * 350.23806 * 9 7 2 11 11 C 1.52953 * 87.66941 * 153.64570 * 10 9 7 12 12 C 1.47222 * 135.96722 * 170.61092 * 9 7 2 13 13 C 1.53327 * 115.75755 * 270.15743 * 11 10 9 14 14 C 1.55020 * 103.78547 * 229.61355 * 13 11 10 15 15 H 1.09007 * 110.87222 * 139.02570 * 14 13 11 16 16 N 1.46505 * 110.87241 * 262.49716 * 14 13 11 17 17 C 1.34775 * 119.99866 * 205.00205 * 16 14 13 18 18 O 1.21599 * 120.00249 * 359.97438 * 17 16 14 19 19 C 1.47502 * 119.99713 * 179.97438 * 17 16 14 20 20 C 1.41196 * 126.37391 * 359.68704 * 19 17 16 21 21 C 1.37992 * 106.86879 * 179.90067 * 20 19 17 22 22 C 1.41385 * 131.99020 * 180.02562 * 21 20 19 23 23 C 1.35737 * 119.33675 * 180.32225 * 22 21 20 24 24 C 1.40827 * 119.71684 * 359.97438 * 23 22 21 25 25 C 1.34539 * 120.58479 * 0.02562 * 24 23 22 26 26 N 1.37437 * 120.74423 * 0.02562 * 25 24 23 27 27 C 1.35123 * 131.28754 * 179.97438 * 26 25 24 28 28 C 1.55056 * 102.13356 * 20.86638 * 14 13 11 29 29 O 1.42829 * 115.80378 * 141.76206 * 11 10 9 30 30 H 0.96997 * 120.00266 * 183.60078 * 1 2 3 31 31 H 1.09003 * 113.50436 * 268.31876 * 10 9 7 32 32 H 1.09001 * 113.50110 * 38.86273 * 10 9 7 33 33 H 1.08998 * 113.50155 * 321.14016 * 12 9 7 34 34 H 1.09003 * 113.50202 * 91.62541 * 12 9 7 35 35 H 1.09001 * 110.56489 * 348.19465 * 13 11 10 36 36 H 1.09003 * 110.55841 * 111.03890 * 13 11 10 37 37 H 0.96994 * 119.99732 * 24.99589 * 16 14 13 38 38 H 1.08001 * 126.56307 * 0.03327 * 20 19 17 39 39 H 1.08001 * 120.32801 * 0.28267 * 22 21 20 40 40 H 1.07997 * 120.13937 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.70393 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.62608 * 179.97438 * 25 24 23 43 43 H 1.08006 * 125.60993 * 359.95605 * 27 26 25 44 44 H 1.09002 * 110.58661 * 82.02225 * 28 14 13 45 45 H 1.08998 * 110.58429 * 204.78805 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.5329 -2.1011 0.3616 9 7 3.3001 -1.2482 -0.4567 10 6 4.2055 -0.3285 -1.1652 11 6 5.3715 -1.0766 -0.5170 12 6 4.3867 -2.2416 -0.4611 13 6 5.8364 -0.5376 0.8411 14 6 7.3727 -0.4068 0.6804 15 1 7.7342 0.5136 1.1390 16 7 8.0577 -1.5724 1.2448 17 6 9.3325 -1.4648 1.6688 18 8 9.9143 -0.4006 1.5823 19 6 10.0220 -2.6382 2.2376 20 6 9.4765 -3.9295 2.4064 21 6 10.4649 -4.7114 2.9684 22 6 10.4901 -6.0712 3.3548 23 6 11.6212 -6.5869 3.8999 24 6 12.7509 -5.7639 4.0725 25 6 12.7189 -4.4709 3.7023 26 7 11.5847 -3.9263 3.1492 27 6 11.3191 -2.6768 2.7087 28 6 7.5361 -0.3572 -0.8608 29 8 6.5219 -1.2690 -1.3414 30 1 -0.4850 -0.8383 0.0528 31 1 4.1707 -0.4336 -2.2495 32 1 4.1159 0.7074 -0.8380 33 1 4.4501 -2.8205 0.4603 34 1 4.4006 -2.8668 -1.3539 35 1 5.3880 0.4356 1.0406 36 1 5.5932 -1.2425 1.6362 37 1 7.5937 -2.4213 1.3136 38 1 8.4776 -4.2454 2.1438 39 1 9.6178 -6.6932 3.2180 40 1 11.6546 -7.6238 4.2000 41 1 13.6506 -6.1743 4.5067 42 1 13.5940 -3.8537 3.8422 43 1 12.0080 -1.8451 2.7234 44 1 7.3529 0.6507 -1.2334 45 1 8.5298 -0.6976 -1.1520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053946038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = 48.238783 kcal Electronic energy + Delta-G solvation = -28881.848984 eV Core-core repulsion = 24867.028430 eV Total energy + Delta-G solvation = -4014.820554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.17936 -41.81825 -40.29233 -38.16395 -37.28472 -35.53973 -34.50958 -34.04730 -32.02517 -30.79210 -30.00117 -28.69508 -27.34618 -27.09816 -25.43647 -23.82548 -23.36282 -22.76359 -22.20747 -21.05593 -20.67705 -19.48584 -18.78629 -18.12755 -17.75286 -17.35757 -17.12512 -16.56866 -16.50729 -16.38065 -16.21654 -15.99535 -15.68222 -15.34799 -15.26527 -15.07425 -14.78171 -14.32039 -14.23874 -13.84200 -13.44300 -13.41749 -12.92241 -12.83693 -12.74690 -12.67287 -12.54440 -12.43771 -12.22885 -12.19587 -12.14469 -11.59079 -11.44203 -11.34566 -11.08210 -10.78328 -10.52497 -10.04179 -9.55978 -9.26493 -8.68406 -8.35522 -5.46058 -0.18197 0.38382 1.06328 1.39579 1.49705 1.62199 1.67805 2.23773 2.44058 2.53247 2.59935 2.70434 2.93540 3.27756 3.43285 3.50586 3.56481 3.61066 3.73776 3.90989 3.94529 4.04955 4.21184 4.29487 4.32346 4.43073 4.49104 4.56978 4.62778 4.65445 4.66705 4.71869 4.76382 4.80627 4.87591 4.91809 4.92572 4.99913 5.19550 5.24941 5.31485 5.41225 5.43016 5.67604 5.88677 5.94517 5.97605 6.27752 6.53420 6.67116 7.19395 7.32324 8.27184 8.85295 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002376 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.248126 B =11779.452878 C =12453.614827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.076 4.076 3 Si 1.098 2.902 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.248 1.248 7 C -0.297 4.297 8 H 0.050 0.950 9 N -0.643 5.643 10 C 0.082 3.918 11 C 0.082 3.918 12 C 0.130 3.870 13 C -0.121 4.121 14 C 0.120 3.880 15 H 0.112 0.888 16 N -0.700 5.700 17 C 0.591 3.409 18 O -0.581 6.581 19 C -0.192 4.192 20 C -0.177 4.177 21 C 0.017 3.983 22 C -0.098 4.098 23 C -0.127 4.127 24 C -0.130 4.130 25 C 0.021 3.979 26 N -0.344 5.344 27 C 0.008 3.992 28 C 0.036 3.964 29 O -0.364 6.364 30 H 0.249 0.751 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.180 0.820 42 H 0.189 0.811 43 H 0.191 0.809 44 H 0.084 0.916 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.424 -11.833 8.973 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.270 4.270 3 Si 0.924 3.076 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.173 1.173 7 C -0.424 4.424 8 H 0.068 0.932 9 N -0.373 5.373 10 C -0.044 4.044 11 C 0.041 3.959 12 C 0.004 3.996 13 C -0.158 4.158 14 C 0.015 3.985 15 H 0.130 0.870 16 N -0.351 5.351 17 C 0.381 3.619 18 O -0.463 6.463 19 C -0.200 4.200 20 C -0.201 4.201 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.095 4.095 26 N -0.007 5.007 27 C -0.126 4.126 28 C -0.042 4.042 29 O -0.281 6.281 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.248 0.752 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.197 0.803 42 H 0.206 0.794 43 H 0.208 0.792 44 H 0.102 0.898 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 31.670 -9.642 8.877 34.275 hybrid contribution -1.050 -1.975 -0.157 2.242 sum 30.620 -11.617 8.720 33.891 Atomic orbital electron populations 1.71039 1.06913 1.28909 1.53164 1.26993 0.96234 1.04429 0.99317 0.83414 0.74627 0.72110 0.77456 1.20935 1.22941 1.17277 1.19769 0.86846 0.95479 1.40305 0.93175 1.45608 1.10572 1.15706 1.65401 1.23322 0.88885 0.95530 0.96623 1.23199 0.84906 0.97169 0.90631 1.22549 0.84233 0.92572 1.00212 1.22754 0.93355 1.03830 0.95910 1.22444 0.91112 0.90614 0.94373 0.86989 1.45648 1.12968 1.14038 1.62415 1.17641 0.81118 0.86929 0.76260 1.90740 1.66723 1.30268 1.58522 1.19443 0.95655 0.94460 1.10434 1.21392 1.00030 0.91638 1.07021 1.19182 0.87875 0.93480 1.08265 1.20988 1.00933 0.90988 0.98755 1.21422 0.92289 1.01897 0.99105 1.21262 1.01189 0.91784 1.00715 1.22345 0.89632 0.97184 1.00389 1.41514 1.11075 1.08983 1.39139 1.22137 0.97830 0.87116 1.05542 1.24142 0.92537 0.94984 0.92496 1.88770 1.23129 1.60543 1.55682 0.94155 0.93493 0.93209 0.91614 0.93211 0.88938 0.88517 0.75161 0.81879 0.82362 0.82136 0.80298 0.79401 0.79249 0.89783 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.58 13.70 21.65 0.30 -61.28 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 1.10 52.90 25.33 68.60 1.74 54.64 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.25 -10.33 5.50 99.48 0.55 -9.78 16 7 C -0.30 -17.17 10.96 84.03 0.92 -16.25 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.64 -31.12 3.53 -739.07 -2.61 -33.73 16 10 C 0.08 3.41 6.69 83.50 0.56 3.97 16 11 C 0.08 2.78 1.66 -10.81 -0.02 2.77 16 12 C 0.13 4.98 8.20 83.40 0.68 5.67 16 13 C -0.12 -3.50 6.11 31.40 0.19 -3.31 16 14 C 0.12 3.02 3.51 46.39 0.16 3.18 16 15 H 0.11 2.82 7.54 -2.38 -0.02 2.80 16 16 N -0.70 -16.41 5.15 -439.11 -2.26 -18.67 16 17 C 0.59 15.44 7.82 86.69 0.68 16.11 16 18 O -0.58 -18.46 16.54 -4.03 -0.07 -18.53 16 19 C -0.19 -4.37 6.12 -20.15 -0.12 -4.49 16 20 C -0.18 -3.48 10.44 22.94 0.24 -3.24 16 21 C 0.02 0.30 6.70 38.90 0.26 0.56 16 22 C -0.10 -1.24 10.11 22.46 0.23 -1.01 16 23 C -0.13 -1.06 10.07 22.32 0.22 -0.84 16 24 C -0.13 -0.89 9.97 22.06 0.22 -0.67 16 25 C 0.02 0.21 10.89 82.97 0.90 1.12 16 26 N -0.34 -5.79 2.92 -345.08 -1.01 -6.80 16 27 C 0.01 0.16 11.37 84.14 0.96 1.12 16 28 C 0.04 0.92 7.43 72.69 0.54 1.46 16 29 O -0.36 -11.34 11.32 -148.98 -1.69 -13.03 16 30 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.08 3.53 -2.39 -0.01 2.07 16 33 H 0.07 2.30 7.91 -2.39 -0.02 2.28 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.85 6.78 -2.39 -0.02 2.83 16 36 H 0.10 2.69 7.69 -2.39 -0.02 2.67 16 37 H 0.41 8.42 7.60 -92.71 -0.70 7.72 16 38 H 0.16 2.59 7.53 -2.91 -0.02 2.57 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 42 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 43 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -78.04 369.97 1.63 -76.41 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.13 Total: 18.90 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 7.09 Total: 2.09 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.58 Total: -120.47 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.75 Total: -31.56 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 1.74 Total: 54.64 kcal Total: -78.04 1.63 -76.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053946038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.653 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds