Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48505 * 109.47071 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47157 * 29.99478 * 3 2 1 6 6 H 1.48494 * 109.47207 * 150.00101 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 13 13 O 1.42898 * 111.00398 * 204.87574 * 11 10 9 14 14 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 15 15 H 1.09003 * 110.71814 * 277.13679 * 14 11 10 16 16 N 1.46496 * 110.71649 * 154.04271 * 14 11 10 17 17 C 1.34781 * 119.99704 * 154.99666 * 16 14 11 18 18 O 1.21547 * 120.00229 * 0.02562 * 17 16 14 19 19 C 1.47858 * 120.00143 * 179.97438 * 17 16 14 20 20 C 1.39618 * 120.11307 * 0.02562 * 19 17 16 21 21 C 1.37967 * 119.98896 * 179.97438 * 20 19 17 22 22 C 1.38265 * 120.21865 * 0.02562 * 21 20 19 23 23 C 1.38911 * 120.22544 * 359.97438 * 22 21 20 24 24 N 1.40223 * 119.99771 * 180.02562 * 23 22 21 25 25 C 1.36556 * 125.67192 * 179.69095 * 24 23 22 26 26 C 1.34856 * 108.20519 * 179.82727 * 25 24 23 27 27 C 1.40943 * 107.46327 * 0.42572 * 26 25 24 28 28 C 1.34858 * 107.46738 * 359.73615 * 27 26 25 29 29 C 1.38588 * 120.00956 * 359.71880 * 23 22 21 30 30 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 31 31 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 33 33 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 34 34 H 0.96701 * 113.99799 * 298.54877 * 13 11 10 35 35 H 0.97001 * 120.00701 * 335.00045 * 16 14 11 36 36 H 1.08007 * 120.00627 * 359.97438 * 20 19 17 37 37 H 1.08001 * 119.89495 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.88847 * 179.97438 * 22 21 20 39 39 H 1.07999 * 125.90279 * 359.97438 * 25 24 23 40 40 H 1.07993 * 126.27065 * 180.15798 * 26 25 24 41 41 H 1.07996 * 126.26740 * 179.73693 * 27 26 25 42 42 H 1.07998 * 125.89582 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.10763 * 180.28080 * 29 23 22 44 44 H 1.09000 * 109.88493 * 59.55525 * 30 9 7 45 45 H 1.09005 * 110.00581 * 298.46835 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 1 -0.3519 -3.8989 1.6990 13 8 -1.6571 -4.4570 0.1740 14 6 0.7784 -4.7525 0.0253 15 1 0.5459 -5.0976 -0.9822 16 7 1.1057 -5.8840 0.8962 17 6 1.7076 -6.9761 0.3846 18 8 1.9793 -7.0219 -0.7992 19 6 2.0385 -8.1180 1.2637 20 6 1.7281 -8.0678 2.6240 21 6 2.0375 -9.1350 3.4418 22 6 2.6555 -10.2560 2.9191 23 6 2.9684 -10.3155 1.5670 24 7 3.5946 -11.4550 1.0419 25 6 3.9474 -11.6390 -0.2644 26 6 4.5264 -12.8517 -0.3776 27 6 4.5231 -13.4431 0.9017 28 6 3.9477 -12.5676 1.7509 29 6 2.6561 -9.2515 0.7357 30 6 1.9318 -3.7275 -0.0016 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5272 -2.4863 -1.0190 33 1 -0.5992 -1.7590 0.6154 34 1 -2.4190 -3.9214 0.4344 35 1 0.8893 -5.8474 1.8411 36 1 1.2458 -7.1936 3.0360 37 1 1.7971 -9.0943 4.4939 38 1 2.8956 -11.0881 3.5642 39 1 3.7921 -10.9341 -1.0677 40 1 4.9167 -13.2913 -1.2836 41 1 4.9106 -14.4186 1.1556 42 1 3.7925 -12.7202 2.8087 43 1 2.8946 -9.2980 -0.3166 44 1 2.5585 -3.8515 0.8815 45 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077325502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 37.094122 kcal Electronic energy + Delta-G solvation = -28431.704332 eV Core-core repulsion = 24416.400509 eV Total energy + Delta-G solvation = -4015.303823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91721 -40.23301 -38.72294 -37.67135 -35.13413 -34.32978 -33.47045 -31.98457 -31.51584 -29.32879 -29.12006 -28.34252 -27.06004 -24.87759 -23.90605 -23.33722 -21.47098 -20.73829 -20.40374 -20.11087 -19.85496 -18.98206 -17.25347 -17.02928 -16.73952 -16.36790 -15.91746 -15.37477 -15.25314 -14.85707 -14.73662 -14.58295 -14.18483 -13.95779 -13.79905 -13.77959 -13.33937 -12.95389 -12.83064 -12.62475 -12.50203 -12.37404 -12.17233 -11.94529 -11.70816 -11.52337 -11.35039 -11.07183 -10.87411 -10.23662 -10.22376 -10.05289 -9.97250 -9.75646 -9.46358 -9.38270 -8.88340 -8.76995 -8.53973 -8.35634 -6.98027 -5.77470 -3.19998 0.37149 0.69004 2.04900 2.46926 2.72424 2.81508 3.13849 3.34816 3.40096 3.41578 3.58603 4.25995 4.31522 4.37492 4.52650 4.55512 4.69354 4.75073 4.77950 4.90656 5.11097 5.19749 5.23005 5.35003 5.36553 5.45910 5.56466 5.57889 5.64398 5.79095 5.84867 5.89443 5.95372 6.01339 6.03125 6.09831 6.24580 6.36703 6.60016 6.61956 6.83277 6.88569 7.11188 7.25090 7.45767 7.55604 7.66321 8.04145 8.18512 8.24032 9.08595 9.68974 10.30889 11.26942 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002117 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.031181 B =13224.854363 C =13568.803417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.141 3.859 15 H 0.104 0.896 16 N -0.705 5.705 17 C 0.556 3.444 18 O -0.532 6.532 19 C -0.096 4.096 20 C -0.099 4.099 21 C -0.096 4.096 22 C -0.120 4.120 23 C 0.132 3.868 24 N -0.397 5.397 25 C -0.011 4.011 26 C -0.192 4.192 27 C -0.190 4.190 28 C -0.018 4.018 29 C -0.082 4.082 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.114 0.886 34 H 0.378 0.622 35 H 0.398 0.602 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.031 0.969 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -22.699 8.705 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.003 3.997 11 C 0.006 3.994 12 H 0.080 0.920 13 O -0.371 6.371 14 C 0.036 3.964 15 H 0.122 0.878 16 N -0.356 5.356 17 C 0.343 3.657 18 O -0.409 6.409 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.140 4.140 23 C 0.039 3.961 24 N -0.068 5.068 25 C -0.138 4.138 26 C -0.216 4.216 27 C -0.214 4.214 28 C -0.145 4.145 29 C -0.103 4.103 30 C 0.002 3.998 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.131 0.869 34 H 0.226 0.774 35 H 0.234 0.766 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.185 0.815 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.162 0.838 44 H 0.049 0.951 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.933 -22.717 7.695 24.164 hybrid contribution 0.053 1.248 0.643 1.405 sum 2.985 -21.469 8.338 23.224 Atomic orbital electron populations 1.69726 1.04951 1.25036 1.57589 1.24810 0.95803 0.97873 1.02136 0.86010 0.78499 0.82922 0.77697 1.21480 1.21582 1.20609 1.19105 0.90631 0.82074 1.43280 0.90162 1.44283 1.01458 0.99755 1.87241 1.22588 0.85649 0.91892 0.99604 1.23646 0.82644 0.96085 0.96993 0.92026 1.86408 1.15978 1.53396 1.81324 1.22079 0.94290 0.84858 0.95175 0.87802 1.45873 1.60505 1.16555 1.12631 1.18105 0.77990 0.82215 0.87431 1.90790 1.53024 1.81219 1.15916 1.19851 1.01255 0.94862 0.94013 1.21420 0.98791 0.99183 0.92402 1.20956 0.97726 0.92338 1.00386 1.20986 1.00456 0.99783 0.92780 1.17753 0.98119 0.86940 0.93246 1.41637 1.44725 1.12179 1.08305 1.22040 1.05812 1.00286 0.85671 1.21017 1.06624 0.95445 0.98486 1.21004 1.06572 1.00480 0.93351 1.21883 1.06829 0.87387 0.98387 1.20890 0.97801 0.90962 1.00635 1.21621 0.93635 0.85341 0.99155 0.93549 0.95577 0.86852 0.77435 0.76643 0.84771 0.84292 0.84837 0.81522 0.84086 0.84175 0.81819 0.83766 0.95120 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.03 3.39 -170.07 -0.58 -15.60 16 10 C 0.13 2.98 5.62 -2.53 -0.01 2.96 16 11 C 0.07 1.21 4.06 -24.58 -0.10 1.11 16 12 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 13 O -0.57 -9.45 13.47 -35.23 -0.47 -9.92 16 14 C 0.14 2.60 3.05 -66.10 -0.20 2.40 16 15 H 0.10 2.15 7.55 -51.93 -0.39 1.76 16 16 N -0.71 -10.47 5.06 -52.97 -0.27 -10.74 16 17 C 0.56 8.64 7.77 -12.32 -0.10 8.54 16 18 O -0.53 -10.21 15.99 5.32 0.09 -10.12 16 19 C -0.10 -1.17 5.87 -104.99 -0.62 -1.78 16 20 C -0.10 -0.90 9.54 -39.17 -0.37 -1.27 16 21 C -0.10 -0.71 10.02 -39.67 -0.40 -1.11 16 22 C -0.12 -0.98 9.45 -39.32 -0.37 -1.35 16 23 C 0.13 1.37 6.61 -83.64 -0.55 0.82 16 24 N -0.40 -4.13 2.97 -60.96 -0.18 -4.31 16 25 C -0.01 -0.12 10.73 -16.65 -0.18 -0.30 16 26 C -0.19 -1.84 10.86 -39.76 -0.43 -2.27 16 27 C -0.19 -1.70 10.86 -39.76 -0.43 -2.13 16 28 C -0.02 -0.17 10.73 -16.64 -0.18 -0.34 16 29 C -0.08 -0.98 9.00 -39.00 -0.35 -1.33 16 30 C 0.13 2.76 7.00 -3.07 -0.02 2.74 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 34 H 0.38 4.81 9.11 45.56 0.42 5.23 16 35 H 0.40 4.69 6.59 -40.82 -0.27 4.42 16 36 H 0.13 0.96 6.40 -52.48 -0.34 0.62 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.76 6.69 -52.49 -0.35 0.41 16 39 H 0.17 1.52 7.01 -52.49 -0.37 1.15 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.16 0.98 7.00 -52.49 -0.37 0.61 16 43 H 0.14 1.78 6.29 -52.49 -0.33 1.45 16 44 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -33.75 373.94 -9.61 -43.36 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.80 Total: 10.45 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -4.57 Total: 0.06 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.47 Total: -56.03 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.39 Total: -20.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.75 -9.61 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077325502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.455 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds