Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48505 * 109.47071 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47157 * 29.99478 * 3 2 1 6 6 H 1.48494 * 109.47207 * 150.00101 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 13 13 O 1.42898 * 111.00398 * 204.87574 * 11 10 9 14 14 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 15 15 H 1.09003 * 110.71814 * 277.13679 * 14 11 10 16 16 N 1.46496 * 110.71649 * 154.04271 * 14 11 10 17 17 C 1.34781 * 119.99704 * 154.99666 * 16 14 11 18 18 O 1.21547 * 120.00229 * 0.02562 * 17 16 14 19 19 C 1.47858 * 120.00143 * 179.97438 * 17 16 14 20 20 C 1.39618 * 120.11307 * 0.02562 * 19 17 16 21 21 C 1.37967 * 119.98896 * 179.97438 * 20 19 17 22 22 C 1.38265 * 120.21865 * 0.02562 * 21 20 19 23 23 C 1.38911 * 120.22544 * 359.97438 * 22 21 20 24 24 N 1.40223 * 119.99771 * 180.02562 * 23 22 21 25 25 C 1.36556 * 125.67192 * 179.69095 * 24 23 22 26 26 C 1.34856 * 108.20519 * 179.82727 * 25 24 23 27 27 C 1.40943 * 107.46327 * 0.42572 * 26 25 24 28 28 C 1.34858 * 107.46738 * 359.73615 * 27 26 25 29 29 C 1.38588 * 120.00956 * 359.71880 * 23 22 21 30 30 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 31 31 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 33 33 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 34 34 H 0.96701 * 113.99799 * 298.54877 * 13 11 10 35 35 H 0.97001 * 120.00701 * 335.00045 * 16 14 11 36 36 H 1.08007 * 120.00627 * 359.97438 * 20 19 17 37 37 H 1.08001 * 119.89495 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.88847 * 179.97438 * 22 21 20 39 39 H 1.07999 * 125.90279 * 359.97438 * 25 24 23 40 40 H 1.07993 * 126.27065 * 180.15798 * 26 25 24 41 41 H 1.07996 * 126.26740 * 179.73693 * 27 26 25 42 42 H 1.07998 * 125.89582 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.10763 * 180.28080 * 29 23 22 44 44 H 1.09000 * 109.88493 * 59.55525 * 30 9 7 45 45 H 1.09005 * 110.00581 * 298.46835 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 1 -0.3519 -3.8989 1.6990 13 8 -1.6571 -4.4570 0.1740 14 6 0.7784 -4.7525 0.0253 15 1 0.5459 -5.0976 -0.9822 16 7 1.1057 -5.8840 0.8962 17 6 1.7076 -6.9761 0.3846 18 8 1.9793 -7.0219 -0.7992 19 6 2.0385 -8.1180 1.2637 20 6 1.7281 -8.0678 2.6240 21 6 2.0375 -9.1350 3.4418 22 6 2.6555 -10.2560 2.9191 23 6 2.9684 -10.3155 1.5670 24 7 3.5946 -11.4550 1.0419 25 6 3.9474 -11.6390 -0.2644 26 6 4.5264 -12.8517 -0.3776 27 6 4.5231 -13.4431 0.9017 28 6 3.9477 -12.5676 1.7509 29 6 2.6561 -9.2515 0.7357 30 6 1.9318 -3.7275 -0.0016 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5272 -2.4863 -1.0190 33 1 -0.5992 -1.7590 0.6154 34 1 -2.4190 -3.9214 0.4344 35 1 0.8893 -5.8474 1.8411 36 1 1.2458 -7.1936 3.0360 37 1 1.7971 -9.0943 4.4939 38 1 2.8956 -11.0881 3.5642 39 1 3.7921 -10.9341 -1.0677 40 1 4.9167 -13.2913 -1.2836 41 1 4.9106 -14.4186 1.1556 42 1 3.7925 -12.7202 2.8087 43 1 2.8946 -9.2980 -0.3166 44 1 2.5585 -3.8515 0.8815 45 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077325502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 14.112657 kcal Electronic energy + Delta-G solvation = -28432.700883 eV Core-core repulsion = 24416.400509 eV Total energy + Delta-G solvation = -4016.300374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.62099 -41.39313 -39.88178 -38.97437 -36.70649 -35.77591 -34.36882 -33.58025 -32.49241 -30.48481 -29.81064 -29.73371 -28.70192 -26.55625 -25.02087 -24.09630 -22.64947 -22.26026 -21.77565 -21.00414 -20.75460 -19.87903 -19.05150 -18.41271 -17.79607 -17.43522 -17.13746 -16.74024 -16.27840 -15.97360 -15.86153 -15.74256 -15.49099 -15.19536 -14.95377 -14.74765 -14.57978 -14.39537 -14.07241 -13.83226 -13.50737 -13.27408 -13.23249 -13.16458 -13.11484 -12.87858 -12.80186 -12.73847 -12.46506 -12.07189 -11.95362 -11.47050 -11.32716 -10.95016 -10.94243 -10.78604 -10.37887 -10.12478 -9.24096 -9.07129 -8.99885 -7.84006 -5.30278 -0.40466 -0.06231 1.31825 1.46821 1.48706 1.57184 1.71063 1.81190 1.98389 2.03474 2.45548 2.74027 3.03969 3.27447 3.40732 3.58957 3.64470 3.79006 3.83185 3.97838 4.03252 4.05205 4.10310 4.18415 4.26070 4.39330 4.44238 4.54285 4.57690 4.68026 4.78230 4.79754 4.85611 4.97539 5.12699 5.21105 5.29345 5.33727 5.34492 5.35812 5.42370 5.60010 5.65674 5.94490 6.18525 6.19080 6.38235 6.43139 6.84235 7.02361 7.05159 7.66537 8.28544 9.17842 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002117 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.031181 B =13224.854363 C =13568.803417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.983 3.017 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.618 5.618 10 C 0.132 3.868 11 C 0.092 3.908 12 H 0.092 0.908 13 O -0.569 6.569 14 C 0.154 3.846 15 H 0.077 0.923 16 N -0.692 5.692 17 C 0.555 3.445 18 O -0.580 6.580 19 C -0.117 4.117 20 C -0.092 4.092 21 C -0.083 4.083 22 C -0.108 4.108 23 C 0.118 3.882 24 N -0.405 5.405 25 C -0.042 4.042 26 C -0.199 4.199 27 C -0.203 4.203 28 C -0.019 4.019 29 C -0.101 4.101 30 C 0.131 3.869 31 H 0.251 0.749 32 H -0.008 1.008 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.417 0.583 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.197 0.803 43 H 0.123 0.877 44 H 0.044 0.956 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -24.258 12.383 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.811 3.189 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.006 3.994 11 C 0.032 3.968 12 H 0.109 0.891 13 O -0.376 6.376 14 C 0.048 3.952 15 H 0.095 0.905 16 N -0.343 5.343 17 C 0.344 3.656 18 O -0.461 6.461 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.101 4.101 22 C -0.128 4.128 23 C 0.026 3.974 24 N -0.077 5.077 25 C -0.169 4.169 26 C -0.223 4.223 27 C -0.227 4.227 28 C -0.145 4.145 29 C -0.122 4.122 30 C 0.004 3.996 31 H 0.061 0.939 32 H 0.009 0.991 33 H 0.112 0.888 34 H 0.248 0.752 35 H 0.256 0.744 36 H 0.175 0.825 37 H 0.199 0.801 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.214 0.786 43 H 0.141 0.859 44 H 0.062 0.938 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 3.017 -24.302 11.413 27.017 hybrid contribution 0.031 1.649 -0.518 1.728 sum 3.047 -22.653 10.895 25.321 Atomic orbital electron populations 1.69941 1.06058 1.25440 1.58036 1.25629 0.96760 1.00905 1.02094 0.85012 0.77727 0.78810 0.77344 1.21744 1.21396 1.19368 1.19428 0.91047 0.83332 1.43421 0.90157 1.44535 1.02423 1.00497 1.87137 1.22418 0.84651 0.94667 0.97634 1.23275 0.83167 0.92456 0.97923 0.89087 1.86384 1.16091 1.53539 1.81616 1.21593 0.93466 0.85252 0.94888 0.90459 1.45604 1.60336 1.15308 1.13089 1.18697 0.76783 0.82869 0.87288 1.90764 1.54916 1.82153 1.18261 1.19576 1.03794 0.93673 0.95011 1.21721 0.97875 1.00664 0.90849 1.21429 0.95829 0.90853 1.01989 1.21450 0.98636 1.00914 0.91752 1.17925 0.98667 0.86575 0.94211 1.41781 1.44950 1.12661 1.08328 1.22203 1.07323 1.01007 0.86337 1.21327 1.06111 0.95252 0.99613 1.21358 1.06843 1.01526 0.92950 1.22492 1.05722 0.86478 0.99810 1.20808 0.99084 0.92105 1.00198 1.21667 0.94595 0.84728 0.98601 0.93913 0.99051 0.88833 0.75171 0.74424 0.82485 0.80112 0.81657 0.82007 0.82996 0.82090 0.78568 0.85932 0.93813 0.96825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.02 10.09 21.65 0.22 -53.80 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 3 Si 0.98 44.63 29.55 68.60 2.03 46.65 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.53 10.27 84.03 0.86 -12.66 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.71 3.39 -691.99 -2.35 -34.06 16 10 C 0.13 6.27 5.62 86.86 0.49 6.76 16 11 C 0.09 3.28 4.06 31.99 0.13 3.41 16 12 H 0.09 2.77 8.01 -2.39 -0.02 2.75 16 13 O -0.57 -18.27 13.47 -148.98 -2.01 -20.27 16 14 C 0.15 5.76 3.05 46.18 0.14 5.90 16 15 H 0.08 3.34 7.55 -2.39 -0.02 3.32 16 16 N -0.69 -19.97 5.06 -439.78 -2.23 -22.20 16 17 C 0.55 17.51 7.77 86.79 0.67 18.18 16 18 O -0.58 -23.65 15.99 -3.86 -0.06 -23.71 16 19 C -0.12 -2.77 5.87 -20.10 -0.12 -2.89 16 20 C -0.09 -1.37 9.54 22.54 0.21 -1.16 16 21 C -0.08 -0.83 10.02 22.21 0.22 -0.60 16 22 C -0.11 -1.33 9.45 22.44 0.21 -1.12 16 23 C 0.12 2.31 6.61 38.04 0.25 2.57 16 24 N -0.40 -8.09 2.97 -346.78 -1.03 -9.13 16 25 C -0.04 -0.92 10.73 83.18 0.89 -0.02 16 26 C -0.20 -3.79 10.86 22.16 0.24 -3.55 16 27 C -0.20 -3.30 10.86 22.16 0.24 -3.06 16 28 C -0.02 -0.30 10.73 83.18 0.89 0.60 16 29 C -0.10 -2.47 9.00 22.65 0.20 -2.27 16 30 C 0.13 5.70 7.00 86.73 0.61 6.31 16 31 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.09 4.84 5.88 -2.38 -0.01 4.82 16 34 H 0.40 9.45 9.11 -74.06 -0.67 8.78 16 35 H 0.42 8.72 6.59 -92.71 -0.61 8.11 16 36 H 0.16 1.54 6.40 -2.91 -0.02 1.53 16 37 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 38 H 0.17 0.96 6.69 -2.91 -0.02 0.94 16 39 H 0.16 3.40 7.01 -2.91 -0.02 3.38 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.20 1.50 7.00 -2.91 -0.02 1.48 16 43 H 0.12 3.40 6.29 -2.91 -0.02 3.38 16 44 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 45 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -77.28 373.94 0.96 -76.33 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.24 Total: 26.70 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.62 Total: 13.49 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.39 Total: -119.18 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -2.07 Total: -43.99 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -77.28 0.96 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077325502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.439 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds