Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99887 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99541 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99967 * 3 2 1 6 6 H 1.48504 * 109.47036 * 150.00167 * 3 2 1 7 7 C 1.38809 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00125 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88440 * 333.16250 * 10 9 7 12 12 C 1.53955 * 113.65891 * 104.50679 * 10 9 7 13 13 C 1.53949 * 87.29531 * 89.83131 * 12 10 9 14 14 H 1.08998 * 113.66648 * 139.29797 * 13 12 10 15 15 N 1.46505 * 113.66272 * 270.26282 * 13 12 10 16 16 C 1.34775 * 119.99815 * 255.49896 * 15 13 12 17 17 O 1.21657 * 119.99709 * 359.97438 * 16 15 13 18 18 C 1.46981 * 119.99948 * 179.97438 * 16 15 13 19 19 C 1.35846 * 125.11824 * 179.97438 * 18 16 15 20 20 C 1.46096 * 106.06706 * 180.02562 * 19 18 16 21 21 C 1.39452 * 135.07439 * 179.97438 * 20 19 18 22 22 N 1.31671 * 120.08015 * 180.02562 * 21 20 19 23 23 C 1.32314 * 122.13742 * 0.02562 * 22 21 20 24 24 C 1.37756 * 121.58440 * 0.24979 * 23 22 21 25 25 C 1.39243 * 118.95342 * 359.50931 * 24 23 22 26 26 O 1.34284 * 134.37942 * 180.15530 * 25 24 23 27 27 C 1.52907 * 113.74631 * 201.73168 * 10 9 7 28 28 C 1.52910 * 121.13724 * 36.14649 * 27 10 9 29 29 C 1.53950 * 86.78312 * 100.80648 * 28 27 10 30 30 C 1.52909 * 121.12968 * 144.69791 * 27 10 9 31 31 H 0.97006 * 119.99929 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.58228 * 335.22385 * 12 10 9 34 34 H 1.09002 * 113.57760 * 204.43525 * 12 10 9 35 35 H 0.96996 * 119.99934 * 75.49018 * 15 13 12 36 36 H 1.08002 * 126.96870 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.96062 * 0.03200 * 21 20 19 38 38 H 1.08002 * 119.20360 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.51930 * 179.71249 * 24 23 22 40 40 H 1.08996 * 113.66001 * 215.28050 * 28 27 10 41 41 H 1.08997 * 113.66219 * 346.33963 * 28 27 10 42 42 H 1.08997 * 113.58289 * 270.13258 * 29 28 27 43 43 H 1.09004 * 113.57725 * 139.33489 * 29 28 27 44 44 H 1.09004 * 113.66610 * 13.66079 * 30 27 10 45 45 H 1.09004 * 113.66385 * 144.71248 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5482 -3.2855 0.4556 12 6 4.7264 -2.8309 -1.3639 13 6 5.9852 -2.0653 -0.9174 14 1 6.9176 -2.5550 -1.1980 15 7 5.9620 -0.6422 -1.2648 16 6 6.7074 -0.1870 -2.2913 17 8 7.3998 -0.9577 -2.9289 18 6 6.6838 1.2406 -2.6402 19 6 7.3915 1.8100 -3.6503 20 6 7.0607 3.2328 -3.6239 21 6 7.4355 4.3477 -4.3729 22 7 6.9409 5.5334 -4.0843 23 6 6.0849 5.7164 -3.0921 24 6 5.6659 4.6711 -2.2987 25 6 6.1502 3.3917 -2.5581 26 8 5.9565 2.1839 -2.0041 27 6 5.5461 -2.3535 0.5187 28 6 5.8991 -1.3993 1.6602 29 6 5.8833 -2.6331 2.5808 30 6 6.1880 -3.4788 1.3310 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 4.2128 -2.3709 -2.2081 34 1 4.8913 -3.8998 -1.4995 35 1 5.4102 -0.0277 -0.7562 36 1 8.0627 1.3119 -4.3343 37 1 8.1324 4.2386 -5.1908 38 1 5.7086 6.7098 -2.8973 39 1 4.9701 4.8409 -1.4903 40 1 6.8831 -0.9415 1.5591 41 1 5.1149 -0.6763 1.8843 42 1 4.9063 -2.8381 3.0184 43 1 6.6870 -2.6380 3.3171 44 1 5.6346 -4.4171 1.2921 45 1 7.2532 -3.6054 1.1374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078671811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = 75.461201 kcal Electronic energy + Delta-G solvation = -30022.325775 eV Core-core repulsion = 26008.685674 eV Total energy + Delta-G solvation = -4013.640101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94796 -40.87393 -39.40355 -38.78302 -35.53190 -33.99238 -33.21348 -32.57544 -31.87318 -30.64178 -30.00924 -25.92093 -25.52918 -24.40373 -24.29022 -23.67435 -22.60787 -21.80935 -20.87615 -20.35353 -19.23457 -18.23105 -18.04679 -17.23392 -16.76119 -16.24345 -15.98109 -15.82861 -15.30246 -14.98918 -14.91906 -14.74476 -14.59220 -14.07273 -13.86726 -13.65487 -13.54295 -13.36369 -12.84661 -12.73922 -12.31452 -12.10419 -12.00498 -11.85755 -11.56803 -11.17116 -11.06021 -10.89104 -10.65121 -10.49266 -10.38951 -10.11178 -10.02960 -9.96886 -9.75757 -9.69463 -9.59918 -9.00733 -8.94166 -8.62521 -7.43841 -5.90715 -3.27946 0.16708 0.95222 1.49276 2.10979 2.92967 3.00453 3.20467 3.25818 3.31965 3.44501 4.01644 4.07967 4.24977 4.43818 4.49673 4.56302 4.66391 4.75074 4.82649 4.90957 4.97587 5.06366 5.09122 5.24426 5.36848 5.39431 5.45896 5.50643 5.61598 5.68965 5.77130 5.81891 5.83654 5.84540 5.96750 6.03463 6.06193 6.15031 6.25433 6.40021 6.48431 6.55241 6.59625 6.66989 6.81933 7.40783 7.59323 7.84553 7.96726 8.28311 9.03441 9.75850 9.93175 11.27095 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.004472 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.676106 B = 6259.503893 C = 8075.942274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.870 3.130 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.095 0.905 9 N -0.724 5.724 10 C 0.196 3.804 11 H 0.076 0.924 12 C -0.182 4.182 13 C 0.132 3.868 14 H 0.099 0.901 15 N -0.685 5.685 16 C 0.600 3.400 17 O -0.517 6.517 18 C -0.020 4.020 19 C -0.100 4.100 20 C -0.199 4.199 21 C 0.174 3.826 22 N -0.494 5.494 23 C 0.117 3.883 24 C -0.159 4.159 25 C 0.106 3.894 26 O -0.176 6.176 27 C -0.130 4.130 28 C -0.132 4.132 29 C -0.133 4.133 30 C -0.103 4.103 31 H 0.261 0.739 32 H 0.355 0.645 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.406 0.594 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.662 3.618 -2.376 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.185 4.185 3 Si 0.700 3.300 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.113 0.887 9 N -0.365 5.365 10 C 0.085 3.915 11 H 0.094 0.906 12 C -0.223 4.223 13 C 0.027 3.973 14 H 0.117 0.883 15 N -0.335 5.335 16 C 0.385 3.615 17 O -0.395 6.395 18 C -0.070 4.070 19 C -0.122 4.122 20 C -0.203 4.203 21 C 0.010 3.990 22 N -0.204 5.204 23 C -0.032 4.032 24 C -0.180 4.180 25 C 0.050 3.950 26 O -0.076 6.076 27 C -0.132 4.132 28 C -0.169 4.169 29 C -0.170 4.170 30 C -0.141 4.141 31 H 0.071 0.929 32 H 0.189 0.811 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.195 0.805 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.853 3.706 -2.994 17.513 hybrid contribution -0.072 0.925 0.632 1.122 sum 16.781 4.631 -2.363 17.567 Atomic orbital electron populations 1.69677 1.04965 1.25902 1.56820 1.24636 0.95180 0.96923 1.01749 0.86769 0.79335 0.85773 0.78106 1.20660 1.21250 1.20421 1.19073 0.80017 0.94950 1.43661 0.88683 1.42492 1.03980 1.01171 1.88904 1.20838 0.88385 0.89920 0.92398 0.90593 1.24252 0.96658 0.99549 1.01890 1.21852 0.99722 0.79853 0.95848 0.88301 1.45687 1.45058 1.10495 1.32234 1.16575 0.80521 0.83374 0.81028 1.90867 1.42347 1.54262 1.52013 1.22261 0.97923 0.89665 0.97116 1.22646 1.00486 0.90740 0.98307 1.20957 1.03009 0.95669 1.00626 1.22446 0.95147 0.85338 0.96087 1.67808 1.11006 1.24165 1.17430 1.22616 0.92436 0.98614 0.89563 1.21152 1.04405 0.88043 1.04381 1.19895 0.96004 0.86187 0.92889 1.84052 1.57588 1.14522 1.51403 1.23571 0.99384 0.98585 0.91648 1.22634 1.01309 0.97081 0.95924 1.22751 1.01886 0.96435 0.95964 1.22505 1.00103 0.96510 0.95016 0.92869 0.81060 0.90570 0.89604 0.75665 0.80494 0.81551 0.81215 0.83460 0.90711 0.90667 0.89755 0.91912 0.90896 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.97 55.49 0.78 -27.45 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.87 21.18 27.74 -169.99 -4.71 16.47 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.89 16 7 C -0.25 -6.64 10.46 -15.06 -0.16 -6.80 16 8 H 0.10 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.72 -15.99 4.57 -52.99 -0.24 -16.23 16 10 C 0.20 3.52 4.35 -67.48 -0.29 3.23 16 11 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 12 C -0.18 -2.98 7.68 -25.75 -0.20 -3.18 16 13 C 0.13 2.02 4.08 -67.48 -0.28 1.74 16 14 H 0.10 1.45 7.54 -51.93 -0.39 1.06 16 15 N -0.68 -11.24 4.92 -54.58 -0.27 -11.51 16 16 C 0.60 9.82 7.79 -12.72 -0.10 9.72 16 17 O -0.52 -9.09 16.46 5.23 0.09 -9.00 16 18 C -0.02 -0.30 7.07 -36.90 -0.26 -0.56 16 19 C -0.10 -1.28 10.80 -37.29 -0.40 -1.68 16 20 C -0.20 -2.52 6.43 -105.22 -0.68 -3.20 16 21 C 0.17 1.86 11.28 -17.17 -0.19 1.67 16 22 N -0.49 -5.66 10.34 -13.00 -0.13 -5.79 16 23 C 0.12 1.22 11.13 -17.52 -0.20 1.02 16 24 C -0.16 -1.91 10.13 -39.38 -0.40 -2.31 16 25 C 0.11 1.53 7.48 -38.13 -0.29 1.24 16 26 O -0.18 -2.86 10.26 3.71 0.04 -2.82 16 27 C -0.13 -1.89 0.77 -154.71 -0.12 -2.01 16 28 C -0.13 -1.88 7.18 -26.28 -0.19 -2.07 16 29 C -0.13 -1.64 8.08 -25.75 -0.21 -1.85 16 30 C -0.10 -1.21 7.84 -26.28 -0.21 -1.42 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.36 7.72 2.99 -40.82 -0.12 7.60 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.41 7.09 5.91 -40.82 -0.24 6.85 16 36 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -31.98 374.72 -8.88 -40.85 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -5.81 Total: 16.06 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.25 Total: -6.22 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.13 Total: -60.99 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.12 Total: -11.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.98 -8.88 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078671811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.313 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds