Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99887 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99541 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99967 * 3 2 1 6 6 H 1.48504 * 109.47036 * 150.00167 * 3 2 1 7 7 C 1.38809 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00125 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88440 * 333.16250 * 10 9 7 12 12 C 1.53955 * 113.65891 * 104.50679 * 10 9 7 13 13 C 1.53949 * 87.29531 * 89.83131 * 12 10 9 14 14 H 1.08998 * 113.66648 * 139.29797 * 13 12 10 15 15 N 1.46505 * 113.66272 * 270.26282 * 13 12 10 16 16 C 1.34775 * 119.99815 * 255.49896 * 15 13 12 17 17 O 1.21657 * 119.99709 * 359.97438 * 16 15 13 18 18 C 1.46981 * 119.99948 * 179.97438 * 16 15 13 19 19 C 1.35846 * 125.11824 * 179.97438 * 18 16 15 20 20 C 1.46096 * 106.06706 * 180.02562 * 19 18 16 21 21 C 1.39452 * 135.07439 * 179.97438 * 20 19 18 22 22 N 1.31671 * 120.08015 * 180.02562 * 21 20 19 23 23 C 1.32314 * 122.13742 * 0.02562 * 22 21 20 24 24 C 1.37756 * 121.58440 * 0.24979 * 23 22 21 25 25 C 1.39243 * 118.95342 * 359.50931 * 24 23 22 26 26 O 1.34284 * 134.37942 * 180.15530 * 25 24 23 27 27 C 1.52907 * 113.74631 * 201.73168 * 10 9 7 28 28 C 1.52910 * 121.13724 * 36.14649 * 27 10 9 29 29 C 1.53950 * 86.78312 * 100.80648 * 28 27 10 30 30 C 1.52909 * 121.12968 * 144.69791 * 27 10 9 31 31 H 0.97006 * 119.99929 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.58228 * 335.22385 * 12 10 9 34 34 H 1.09002 * 113.57760 * 204.43525 * 12 10 9 35 35 H 0.96996 * 119.99934 * 75.49018 * 15 13 12 36 36 H 1.08002 * 126.96870 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.96062 * 0.03200 * 21 20 19 38 38 H 1.08002 * 119.20360 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.51930 * 179.71249 * 24 23 22 40 40 H 1.08996 * 113.66001 * 215.28050 * 28 27 10 41 41 H 1.08997 * 113.66219 * 346.33963 * 28 27 10 42 42 H 1.08997 * 113.58289 * 270.13258 * 29 28 27 43 43 H 1.09004 * 113.57725 * 139.33489 * 29 28 27 44 44 H 1.09004 * 113.66610 * 13.66079 * 30 27 10 45 45 H 1.09004 * 113.66385 * 144.71248 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5482 -3.2855 0.4556 12 6 4.7264 -2.8309 -1.3639 13 6 5.9852 -2.0653 -0.9174 14 1 6.9176 -2.5550 -1.1980 15 7 5.9620 -0.6422 -1.2648 16 6 6.7074 -0.1870 -2.2913 17 8 7.3998 -0.9577 -2.9289 18 6 6.6838 1.2406 -2.6402 19 6 7.3915 1.8100 -3.6503 20 6 7.0607 3.2328 -3.6239 21 6 7.4355 4.3477 -4.3729 22 7 6.9409 5.5334 -4.0843 23 6 6.0849 5.7164 -3.0921 24 6 5.6659 4.6711 -2.2987 25 6 6.1502 3.3917 -2.5581 26 8 5.9565 2.1839 -2.0041 27 6 5.5461 -2.3535 0.5187 28 6 5.8991 -1.3993 1.6602 29 6 5.8833 -2.6331 2.5808 30 6 6.1880 -3.4788 1.3310 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 4.2128 -2.3709 -2.2081 34 1 4.8913 -3.8998 -1.4995 35 1 5.4102 -0.0277 -0.7562 36 1 8.0627 1.3119 -4.3343 37 1 8.1324 4.2386 -5.1908 38 1 5.7086 6.7098 -2.8973 39 1 4.9701 4.8409 -1.4903 40 1 6.8831 -0.9415 1.5591 41 1 5.1149 -0.6763 1.8843 42 1 4.9063 -2.8381 3.0184 43 1 6.6870 -2.6380 3.3171 44 1 5.6346 -4.4171 1.2921 45 1 7.2532 -3.6054 1.1374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078671811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 54.996351 kcal Electronic energy + Delta-G solvation = -30023.213197 eV Core-core repulsion = 26008.685674 eV Total energy + Delta-G solvation = -4014.527524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.95291 -42.12340 -40.43206 -39.88057 -36.83350 -35.65203 -34.22621 -34.06844 -32.87707 -32.43411 -31.03379 -27.07368 -26.84704 -25.71414 -25.50989 -24.67877 -23.94648 -22.98862 -22.07499 -21.58180 -20.63669 -19.60950 -19.15817 -18.68335 -17.84461 -17.35408 -17.00398 -16.89787 -16.70298 -16.48514 -16.05693 -16.03301 -15.63228 -15.44441 -15.23171 -14.74896 -14.56202 -14.53854 -14.36436 -13.99287 -13.84324 -13.57631 -13.19790 -12.98638 -12.80285 -12.74174 -12.65417 -12.23687 -12.03138 -11.93145 -11.71072 -11.60653 -11.40752 -11.17041 -10.97627 -10.90032 -10.80218 -10.66575 -10.16350 -9.60213 -9.37722 -8.10116 -5.43337 -0.78628 0.00955 0.50233 1.09668 1.23278 1.28333 1.32688 1.76571 1.83867 2.36960 2.58180 2.98596 3.19889 3.21572 3.25406 3.37681 3.48105 3.64305 3.67035 3.73468 3.85833 3.89840 3.99535 4.04857 4.10798 4.18385 4.45570 4.52876 4.55484 4.58917 4.65240 4.75721 4.80483 4.87806 4.90824 4.92693 5.03909 5.08285 5.11749 5.18376 5.21232 5.38379 5.48939 5.56317 5.62013 5.73622 6.13413 6.16118 6.71276 6.74596 6.98382 7.74184 7.90657 9.11115 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.004472 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.676106 B = 6259.503893 C = 8075.942274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.054 4.054 3 Si 0.932 3.068 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.227 4.227 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.175 3.825 11 H 0.069 0.931 12 C -0.175 4.175 13 C 0.135 3.865 14 H 0.114 0.886 15 N -0.691 5.691 16 C 0.602 3.398 17 O -0.535 6.535 18 C -0.059 4.059 19 C -0.072 4.072 20 C -0.212 4.212 21 C 0.186 3.814 22 N -0.507 5.507 23 C 0.130 3.870 24 C -0.178 4.178 25 C 0.079 3.921 26 O -0.200 6.200 27 C -0.120 4.120 28 C -0.136 4.136 29 C -0.128 4.128 30 C -0.088 4.088 31 H 0.258 0.742 32 H 0.358 0.642 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.399 0.601 36 H 0.202 0.798 37 H 0.203 0.797 38 H 0.205 0.795 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.994 4.361 -2.783 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.246 4.246 3 Si 0.760 3.240 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.358 4.358 8 H 0.083 0.917 9 N -0.370 5.370 10 C 0.066 3.934 11 H 0.087 0.913 12 C -0.217 4.217 13 C 0.031 3.969 14 H 0.132 0.868 15 N -0.339 5.339 16 C 0.389 3.611 17 O -0.414 6.414 18 C -0.107 4.107 19 C -0.093 4.093 20 C -0.215 4.215 21 C 0.022 3.978 22 N -0.217 5.217 23 C -0.019 4.019 24 C -0.198 4.198 25 C 0.024 3.976 26 O -0.101 6.101 27 C -0.122 4.122 28 C -0.174 4.174 29 C -0.165 4.165 30 C -0.126 4.126 31 H 0.067 0.933 32 H 0.193 0.807 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.235 0.765 36 H 0.219 0.781 37 H 0.220 0.780 38 H 0.222 0.778 39 H 0.174 0.826 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.249 4.411 -3.396 21.000 hybrid contribution -1.105 0.696 0.691 1.477 sum 19.145 5.107 -2.705 19.998 Atomic orbital electron populations 1.69845 1.06784 1.26507 1.59566 1.25330 0.95942 1.00464 1.02890 0.85749 0.78972 0.81281 0.78001 1.20923 1.21507 1.17906 1.19048 0.82172 0.93642 1.40950 0.91695 1.42421 1.02363 1.03040 1.89135 1.21110 0.90092 0.87970 0.94242 0.91323 1.24192 0.96849 1.01310 0.99316 1.21902 0.99533 0.79395 0.96085 0.86828 1.45768 1.45037 1.10760 1.32368 1.16694 0.79988 0.83915 0.80537 1.90837 1.43101 1.54972 1.52498 1.22160 1.00224 0.89347 0.99018 1.23006 0.98718 0.90784 0.96823 1.21136 1.03358 0.96108 1.00920 1.23036 0.94502 0.84353 0.95936 1.67945 1.11531 1.24366 1.17879 1.23204 0.90951 0.99559 0.88148 1.21459 1.05246 0.87657 1.05455 1.20457 0.97053 0.86324 0.93800 1.83984 1.58449 1.15329 1.52356 1.23444 0.96279 1.00778 0.91690 1.22687 1.01094 0.97163 0.96419 1.22723 1.02136 0.95117 0.96574 1.22552 1.01416 0.95701 0.92959 0.93289 0.80711 0.93546 0.86774 0.76468 0.78072 0.78049 0.77817 0.82578 0.89178 0.93524 0.91111 0.89491 0.89843 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.97 13.97 21.65 0.30 -61.67 16 2 C -0.05 -3.17 5.50 84.86 0.47 -2.70 16 3 Si 0.93 45.14 27.74 68.60 1.90 47.05 16 4 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 7 C -0.23 -12.67 10.46 84.03 0.88 -11.79 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 9 N -0.73 -32.79 4.57 -321.56 -1.47 -34.26 16 10 C 0.18 6.30 4.35 45.28 0.20 6.50 16 11 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 12 C -0.18 -5.66 7.68 31.23 0.24 -5.42 16 13 C 0.14 3.95 4.08 45.28 0.18 4.14 16 14 H 0.11 3.04 7.54 -2.39 -0.02 3.03 16 15 N -0.69 -22.40 4.92 -444.83 -2.19 -24.59 16 16 C 0.60 19.44 7.79 86.53 0.67 20.12 16 17 O -0.53 -18.26 16.46 -4.21 -0.07 -18.33 16 18 C -0.06 -1.77 7.07 24.01 0.17 -1.60 16 19 C -0.07 -1.72 10.80 23.75 0.26 -1.46 16 20 C -0.21 -4.99 6.43 -20.25 -0.13 -5.12 16 21 C 0.19 3.43 11.28 85.01 0.96 4.39 16 22 N -0.51 -10.13 10.34 -195.03 -2.02 -12.15 16 23 C 0.13 2.37 11.13 84.51 0.94 3.31 16 24 C -0.18 -4.03 10.13 22.40 0.23 -3.80 16 25 C 0.08 2.21 7.48 23.21 0.17 2.38 16 26 O -0.20 -6.51 10.26 -9.63 -0.10 -6.61 16 27 C -0.12 -3.30 0.77 -52.31 -0.04 -3.34 16 28 C -0.14 -3.67 7.18 30.89 0.22 -3.45 16 29 C -0.13 -2.84 8.08 31.23 0.25 -2.58 16 30 C -0.09 -1.78 7.84 30.88 0.24 -1.54 16 31 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 32 H 0.36 15.74 2.99 -92.70 -0.28 15.46 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.40 13.98 5.91 -92.71 -0.55 13.43 16 36 H 0.20 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.53 7.51 -2.39 -0.02 1.51 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.69 374.72 2.43 -70.26 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: 0.16 Total: 42.25 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.91 Total: -1.96 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -5.37 Total: -132.66 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.17 Total: -24.94 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Total: -72.69 2.43 -70.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078671811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.257 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds